prot_S-dermatodea_contig10975.643.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10975.643.1
Unique Nameprot_S-dermatodea_contig10975.643.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length643
Homology
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BLAST of mRNA_S-dermatodea_contig10975.643.1 vs. uniprot
Match: A0A6H5JTB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.680e-11
Identity = 110/276 (39.86%), Postives = 130/276 (47.10%), Query Frame = 0 
Query:  111 ISPSLAYLNLSHNAFEGELPLADLLLQL------HGAESDSDSGERG----------CVPDMTSXXXXXXXXXXXXXXXXXPEDIGTLTSLTTMDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGPDGEGTGAGGLGKLALLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRLEGNSSLQGPIPPSLASRPECIITANKAVLEDTKATMLGSRLDEWCLMPRKA 370
            +S SL YLNL HNAFEG+LP++ L           G+ S S S  +G              +++                 PE+IG+LTSL     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+G DG     GGLG+L+ LE L                                                                      SLRLE N SL+GPIP  LAS   C + A++ VLEDT+A MLGS+LDEW LMPRKA
Sbjct:  390 LSSSLVYLNLGHNAFEGDLPVSPLSSHSAGGRVRRGSRSGSQSDGQGRNSRRKRSESAAAVVSASPLSYLNLCHNKFTGHVPEEIGSLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDDG-----GGLGRLSSLEILRLDGNTFHGIVPAALGNLARLEVLHLQLDRLWALAVRDNNLSGRVPESLGCLTGLR--------------SLRLEENPSLRGPIPDQLASGVNCNVRADQPVLEDTEAAMLGSKLDEWFLMPRKA 646
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BLAST of mRNA_S-dermatodea_contig10975.643.1 vs. uniprot
Match: D7FPI3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI3_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.320e-10
Identity = 160/277 (57.76%), Postives = 181/277 (65.34%), Query Frame = 0 
Query:  110 AISPSLAYLNLSHNAFEGELPLADLLLQL------HGAESDSDSGERG----------CVPDMTSXXXXXXXXXXXXXXXXXPEDIGTLTSLTTMDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGPDGEGTGAGGLGKLALLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRLEGNSSLQGPIPPSLASRPECIITANKAVLEDTKATMLGSRLDEWCLMPRKA 370
            A+S SL YLNL HNAFEG+LP++ L           G+ S S S  +G              +++                  E+IG+LTS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +G DG     GGLG+L+ LE+L              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RLE N SL+GPIP  LAS   C + A++ VL+DT+ATMLGSRLDEW LMPRKA
Sbjct:  250 ALSSSLVYLNLGHNAFEGDLPVSPLSPHSAGGRVRRGSTSGSPSEGQGRSSRRRRSESAAGVVSASPLSYLNLCHNKFTGRVSEEIGSLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGILEGDDG-----GGLGRLSSLETLRLDGNTFHGIVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEENPSLRGPIPDQLASGVNCNVRADQPVLDDTEATMLGSRLDEWFLMPRKA 521
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10975.643.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTB3_9PHAE7.680e-1139.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI3_ECTSI2.320e-1057.76Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 182..206
e-value: 16.0
score: 11.6
coord: 263..286
e-value: 110.0
score: 4.8
coord: 38..61
e-value: 38.0
score: 8.5
coord: 86..110
e-value: 0.99
score: 18.4
coord: 62..85
e-value: 53.0
score: 7.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..227
e-value: 1.1E-56
score: 194.3
coord: 228..342
e-value: 2.6E-23
score: 84.0
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 39..99
e-value: 2.0E-12
score: 46.7
NoneNo IPR availablePANTHERPTHR46662:SF2coord: 114..302
coord: 2..138
coord: 236..334
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 114..302
coord: 2..138
coord: 236..334
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 5..335

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10975contigS-dermatodea_contig10975:484..5767 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10975.643.1mRNA_S-dermatodea_contig10975.643.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10975 484..5767 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10975.643.1 ID=prot_S-dermatodea_contig10975.643.1|Name=mRNA_S-dermatodea_contig10975.643.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=643bp
SQLNGAIPKEIGSLHFIVELRMGENELAGKLPPLLSNMRSLQALDLTSNN
IQGHIPESFGGMTSLRELWLSGNQLVGGIPETLSKLKRLESLNLSSNKLA
ARLPRRFFRAISPSLAYLNLSHNAFEGELPLADLLLQLHGAESDSDSGER
GCVPDMTSPPIYYLNISHNRLTGSIPEDIGTLTSLTTMDLSCNKLEGPLP
PGIGGCSTLRNLSLSRCGLTGRLDGPDGEGTGAGGLGKLALLESLRLDCN
VFEGSIPSVLGNLTCLELLQLQGNCFSGYLPATLGDLDRLWALVVRDNEL
VGRVPESFSRLTRLRSLRLEGNSSLQGPIPPSLASRPECIITANKAVLED
TKATMLGSRLDEWCLMPRKAFLTLPELSGYTSVRPSLVRHVSTLAPYGCH
VFVGARGGRLVVRRNEIAFFSHCWDLLPDQCPPRSSLLEGPYPDSLDHAK
LRHIQACLAGCPPNIQYVWVDMLCVPLAERARRTALGRSVPFFVQNCGRF
FILAPDMAGLERYKTRAWCRLEALCAACPHQPSQVASPFSPQPRQNSPQT
RFMYDSVECFSSTWENGARVEARIGGGEELAAAGFLKNAASGKLSDQNDR
QIVAEAALAVTNAMELSGRMDPGAAKRIQLSCRRILYGAQSWE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt