prot_S-dermatodea_contig10832.564.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10832.564.1
Unique Nameprot_S-dermatodea_contig10832.564.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length248
Homology
BLAST of mRNA_S-dermatodea_contig10832.564.1 vs. uniprot
Match: D8LES9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES9_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 2.480e-101
Identity = 163/254 (64.17%), Postives = 195/254 (76.77%), Query Frame = 0
Query:    1 MTSFGEARLAGDPRGNFVDDLSSVSALILTFGILAGIPGTVDLIGSAAEDVDWNGDPSNGVFPPILGLIGNIVRVLFGMSSVFLGFQYVAARWGSKLGSLVGLGITLAAWFPFSVTIALIAFQADHENIADP--PLLIPY---AVSKGEIASVATMGCLGFYGYAGTV-SALTFLHWKMYRYFAGYADTYSASYYRSRLAYYGGLTVMVGIVQVALGAFVLQKFEGGQLDVPVVAGPFFILWPEMSITVGLFQV 248
            MTS+GEARL   PR N VDDL++ S LIL +GI+  I GTVDL  ++A+ VDW+G  S+GVFPPI  L+  +   LFG+ S+FLGFQYVA+RWGSK+ SL GLGITLAAWFPF  T+ALIAFQADH N+     PL I +   +VS+GEI S+A MG LGF+GYAGTV  ALTFL WKMYR+F G A TYSA+YYRSRL YYG L++MVG +QVALG+FV   F  GQL  PVV+GPFFILWPE+SITVG+ QV
Sbjct:    1 MTSYGEARLMDSPRANLVDDLTTTSGLILAYGIIVIIGGTVDLTAASAKGVDWSG--SDGVFPPIAILLAQLTVTLFGLVSMFLGFQYVASRWGSKVTSLFGLGITLAAWFPFLTTVALIAFQADHGNVGGGAGPLQILHPTISVSQGEINSIALMGILGFWGYAGTVIGALTFLQWKMYRFFQGGASTYSATYYRSRLGYYGFLSLMVGALQVALGSFVEGMFGWGQLPSPVVSGPFFILWPELSITVGVCQV 252          
BLAST of mRNA_S-dermatodea_contig10832.564.1 vs. uniprot
Match: A0A836CMW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.060e-32
Identity = 78/233 (33.48%), Postives = 128/233 (54.94%), Query Frame = 0
Query:   17 FVDDLSSVSALILTFGILAGIPGTVDLIGSAAEDVDWNGDPSNGVFPPILGLIGNIVRVLFGMSSVFLGFQYVAARWGSKLGSLVGLGITLAAWFPFSVTIALIAFQADHENIADPPLLIPYAV--SKGEIASVATMGCLGFYGY-AGTVSALTFLHWKMYR-YFAGYADTYSASYYRSRLAYYGGLTVMVGIVQVALGAFVLQKFEGGQLDVPVVAGPFFILWPEMSITVGL 245
            ++ ++   + L + FG +A +   + +  S   D+      ++  FPPI  L+ N+ + LFG+S++ +G  ++ +  GS   S   + IT AAWFPF   I+LI+F  D+   A  P  IP  +  +  ++ +V  +  LGF  Y A  V ALTF   K++R +       Y+ +YY SR  YYG LT++ G+VQ+ALGA+V   F   +L  P+ AGPF + + + SI +G+
Sbjct:    8 YLCEVRQTAGLAILFGSMAVLSACIGI--SEVTDIGQKWAGNSLTFPPIALLLANLTQALFGLSNIGVGLAWLVSGKGSVGWSFFSMVITYAAWFPFLTVISLISFTGDNYPQAPQPF-IPMTLMPTTTDVNAVTALAALGFIAYGANLVGALTFCATKLFRAHSVAGVTAYTGAYYASRQTYYGFLTLLAGVVQLALGAYVQDNFGSDRLLEPIAAGPFTVTYSQASIAMGV 237          
BLAST of mRNA_S-dermatodea_contig10832.564.1 vs. uniprot
Match: K0TGC2_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGC2_THAOC)

HSP 1 Score: 98.6 bits (244), Expect = 1.970e-20
Identity = 66/229 (28.82%), Postives = 107/229 (46.72%), Query Frame = 0
Query:   20 DLSSVSALILTFGILAGIPGTVDLIGSAAEDVDWNGDPSNGVFPPILGLIGNIVRVLFGMSSVFLGFQYVAARWGSKLGSLVGLGITLAAWFPFSVTIALIAFQADHENIADPPLLIPYAVSKGEIASVATMGCLGFYGYA-GTVSALTFLHWKMYRYFAGYADTYSASYYRSRLAYYGGLTVMVGIVQVALGAFVLQKFEGGQLDVPVVAGPFFILWPEMSITVGLFQ 247
            D    S L+LT G+ A      D++ S A+         +G+  P+  LI  + +  FG++ + +GF       GS L + +       AW PF V ++ I      +   +P +   Y  S   +  V +M  LG   YA G +     + + M+   AG     S  Y+R R   Y GL  + G+VQ+ALG+F++  +  G L+ P+ A  F +  PE+S+T+GL Q
Sbjct:   22 DYRMYSGLLLTLGLCAAYGAFADIV-SLADTA------KSGL--PLATLIAAVFQGFFGLTCMGVGFTGAVMDKGSTLLTTIAASSIQLAWMPFLVGLSTIGMGIVSDPSENPFIPALYDPSAAAVKFVGSMAFLGLMSYAIGFIXXXXXMSFSMHSIQAGKPQDRSGVYFRGRAKLYNGLLFLAGLVQLALGSFIINTYGNGPLEAPIFAVVFLVFSPEISVTIGLLQ 241          
BLAST of mRNA_S-dermatodea_contig10832.564.1 vs. uniprot
Match: A0A7S2ZES9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZES9_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 6.930e-6
Identity = 43/194 (22.16%), Postives = 86/194 (44.33%), Query Frame = 0
Query:   56 DPSNGVFPPILGLIGNIVRVLFGMSSVFLGFQYVAARWGSKLGSLVGLGITLA-AWFPFSVTIALIAFQADHENIADPPLLIPYAVSKGEIASVATMGCLGFYGYAGTVSALTFLHWKMYRYFAGYADTYSASYYRSRLAYYGGLTVMVGIVQVALGAFVLQKFEG-GQLDVPVVAGPFFILWPEMSITVGLFQ 247
            DP  G F   L L+     +LFG++ V +G   +  + G+K+ +   + +     WF F V +        ++ + D  +   Y+++  +   V     L    +   +    F+   + R       +  ++Y + RL  +  + + +G +   +G  V++ + G G  D PVV  P  I++PE++IT G+F 
Sbjct:   60 DPQPGPFSQSLLLVSACGEILFGLAGVLVGGALILVKAGNKMITTAWMALAFVLGWFVFVVWVLAAPI---NDLVNDRQVPAAYSLTLPQYDCVRVFALLAGLSWCFALQGGQFMIGNVVRTHQADGKSQGSAYSKKRLLLWS-INLTLGGLYFIIGGSVVRAYMGPGPYDPPVVEEPMLIVYPELTITAGVFH 249          
BLAST of mRNA_S-dermatodea_contig10832.564.1 vs. uniprot
Match: R7QHI4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHI4_CHOCR)

HSP 1 Score: 54.7 bits (130), Expect = 5.320e-5
Identity = 55/229 (24.02%), Postives = 98/229 (42.79%), Query Frame = 0
Query:   25 SALILTFGILAGIPGTVDLIGSAAEDVDWNGDPSNGVFPPILGLIGNIVRVLFGMSSVFLGFQ-YVAARWGSKLGSLVGLGITLAAWFPFSVTIALIA-FQADHENIADPPLLIPYAVSKGEIASVATMGCLGFYGYAGTVSALTFLHWKMYRYFAGYADT---YSASYYRSRLAYYGGLTVMVGIVQVALGAFVLQKFEGGQLDVPVVAGPFFILWPEMSITVGLFQV 248
            +AL+  + IL    G++  I          G P     P +LG +G++  V+FG+  +F+G   ++     +    LV L  TL  +F F V + ++  ++A  + +    L +      GE   V  +G L  + +   +    F+   M R  A   DT      +    R  ++     M G+  +  GAF+  K  GG L++P ++ P     P M+IT G+  +
Sbjct:  184 AALLALWSILVINEGSIRFISENPSQGITGGRP-----PKLLGFLGSLSEVVFGLLGLFVGLSAFLLRAHNAGATKLVMLIQTLLGYFVFIVFVFILPIYRAVDKGMFRDDLTV------GENRFVIALGILTSFHFCLALQGGQFVF--MARLVAAATDTDFLKQRTGATMRAVFWNANLAMSGVWTLITGAFIAAKISGGTLEMPYISPPNVGRLPGMTITAGVLMI 399          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10832.564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LES9_ECTSI2.480e-10164.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMW6_9STRA5.060e-3233.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0TGC2_THAOC1.970e-2028.82Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A7S2ZES9_9RHOD6.930e-622.16Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
R7QHI4_CHOCR5.320e-524.02Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 144..169
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 87..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..124
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 216..226
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 170..192
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 125..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 227..246
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 247..248
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..86
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 193..215
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..41
NoneNo IPR availableTMHMMTMhelixcoord: 65..87
NoneNo IPR availableTMHMMTMhelixcoord: 193..215
NoneNo IPR availableTMHMMTMhelixcoord: 225..247
NoneNo IPR availableTMHMMTMhelixcoord: 23..45
NoneNo IPR availableTMHMMTMhelixcoord: 100..122
NoneNo IPR availableTMHMMTMhelixcoord: 148..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10832contigS-dermatodea_contig10832:164..4369 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10832.564.1mRNA_S-dermatodea_contig10832.564.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10832 164..4369 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10832.564.1 ID=prot_S-dermatodea_contig10832.564.1|Name=mRNA_S-dermatodea_contig10832.564.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=248bp
MTSFGEARLAGDPRGNFVDDLSSVSALILTFGILAGIPGTVDLIGSAAED
VDWNGDPSNGVFPPILGLIGNIVRVLFGMSSVFLGFQYVAARWGSKLGSL
VGLGITLAAWFPFSVTIALIAFQADHENIADPPLLIPYAVSKGEIASVAT
MGCLGFYGYAGTVSALTFLHWKMYRYFAGYADTYSASYYRSRLAYYGGLT
VMVGIVQVALGAFVLQKFEGGQLDVPVVAGPFFILWPEMSITVGLFQV
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