prot_S-dermatodea_contig10652.455.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10652.455.1
Unique Nameprot_S-dermatodea_contig10652.455.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length551
Homology
BLAST of mRNA_S-dermatodea_contig10652.455.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.680e-117
Identity = 237/390 (60.77%), Postives = 284/390 (72.82%), Query Frame = 0
Query:  174 MDRVRELAIELNAIPGEMAVVDDEIARAELLAAERLVERLGSDMKGLEEDKSDIDERLHVLRAEATQL---REGRGGVDGN---DESEALQKDLLVTLTDLAQASTEVKLERAALREKGELNAKWGQILREARAERIELETRSAGLRGRCALLKERRGRLEQEIARSRAQLST---DEGSA---GGRGRSVDTARRALDDLNASVGRAEARRVTLSAAVTRVKAEVEENRSQALAATVAVDEVWERMRQIGSPLLTTDDTERYLRRLEDQRSIQRSRQLDLSRSLESSKLAVAAAARRVGAPQWCSQLVTNSNDGSTIGDNTGDDGTGTGHRGCLFELFELRQGSGDKS-FKALASLLSSSLTVWVCESSRHADQALDLARANGAGLRVW 550
            MDRVREL  EL AIPG+M  +D EIARAE  A ERLV RLG D++ LE +KS  D+R+  L+AE T+     E RGG DG+   D SEALQK+L + LT LA+AS EV+LE+AALREK ELN KW QIL  AR ER++L+ +S+ LRGRCA+LKERRGRL+QE+ RSRAQL T   D GS     G   ++  ARR LDD   SV RAE+RR TLSA V+R +AEVEE  SQ  AA   VDEVW +MRQIGSPL T +D E YLR ++DQRSIQR RQLDLSR+LESS+ ++AAA RRVGAPQWCSQLV +              G G GHRG LFE+FE+R+G GD+   +ALASLL+ SL+VWVCES +HADQALDLA++N AGLRVW
Sbjct:    1 MDRVRELTTELEAIPGKMEALDREIARAEHAATERLVVRLGFDVEALEREKSADDDRIRGLQAEMTEAAGSNEDRGG-DGSGSSDGSEALQKELSLALTGLAEASAEVRLEKAALREKEELNGKWLQILDAARRERVDLDAKSSALRGRCAVLKERRGRLQQEVDRSRAQLFTIAADGGSVPNGSGADGALRAARRVLDDHQESVKRAESRRATLSAMVSRAEAEVEERTSQVTAANALVDEVWGKMRQIGSPLRTAEDAEMYLRGVKDQRSIQRERQLDLSRALESSRQSLAAARRRVGAPQWCSQLVYSG-------------GGGGGHRGFLFEVFEIRRGLGDEGHLQALASLLAGSLSVWVCESPQHADQALDLAKSNAAGLRVW 376          
BLAST of mRNA_S-dermatodea_contig10652.455.1 vs. uniprot
Match: D7FQD0_ECTSI (Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD0_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.090e-56
Identity = 97/111 (87.39%), Postives = 107/111 (96.40%), Query Frame = 0
Query:    1 ITGPNGAGKSTLLNAILFGLGESAAQVGARQNSELASAAHAEVELLFRSVSRGVSDVKVSSAVSRTNGQRTFAFSGQKLPKHRFDHFLRTRLGIATGNPFWKVSQDGIHQL 111
            ITGPNG+GKSTLLNAILFGLGE+A Q+GA+QN+ELASAAHAEVELLFR VSRGVSD KVSSAVSR NGQRT+AF+GQ+LPKHRFDHFLRTRLGIATGNPFW+VSQDGIH+L
Sbjct:   63 ITGPNGSGKSTLLNAILFGLGENANQLGAKQNAELASAAHAEVELLFRGVSRGVSDAKVSSAVSRANGQRTYAFNGQRLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL 173          
BLAST of mRNA_S-dermatodea_contig10652.455.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.330e-32
Identity = 86/222 (38.74%), Postives = 116/222 (52.25%), Query Frame = 0
Query:    1 ITGPNGAGKSTLLNAILFGLGESAAQVGARQNSELASAAHAEVELLFRSVSRGVS----------------DVKVSSAVSRTNGQRTFAFSGQKLPKHRFDHFLRTRLGIATGNPFWKVSQDGIHQLLQASPHALHDTLCEVSGTKAINAHRSNALKQLGRWKKSIADIQLNIAALEEAVGREGAHLVAMDRVRELAIELNAIPGEMAVVDDEIARAELLAA 206
            + GPNGAGKSTLL AILF LG  AA       S+LASA    VE  F +                      +V V + V +  G+R +   GQK+P+ RFD  L   LG++   PFW + Q+G+  +L A    LHD LCEV+GTK INA R+  LKQL  W+ S+  I   +   E AV  E   L  ++R+ EL  +L A P ++  +D ++  AE  AA
Sbjct:   49 VVGPNGAGKSTLLQAILFALGGKAASTRGASASDLASAPTLHVECTFVTTXXXXXXXXXXXXXXXXXXXXXEVSVGTRVCKATGERAYLVQGQKVPRKRFDGALLA-LGLSVDAPFWHIRQNGMQSILAAPAETLHDHLCEVAGTKGINAQRAAVLKQLESWRASLLAITATLGKAEAAVDAEAGQLHILERLDELQEQLAAFPWQLKKLDAQLRAAEAAAA 269          
BLAST of mRNA_S-dermatodea_contig10652.455.1 vs. uniprot
Match: A0A6H5JHU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.750e-28
Identity = 67/104 (64.42%), Postives = 82/104 (78.85%), Query Frame = 0
Query:  237 EATQLREGRGGVDG--NDESEALQKDLLVTLTDLAQASTEVKLERAALREKGELNAKWGQILREARAERIELETRSAGLRGRCALLKERRGRLEQEIARSRAQL 338
            EA   +EGRGG     +D SEALQK+L + LT LA+AS EV+LE+AALREK ELN KW QIL  AR ER++L+ +S+ LRGRCA+LKERRGRL+QE+ RSRAQL
Sbjct:    3 EAAGRKEGRGGDSSGSSDGSEALQKELSLALTGLAEASAEVRLEKAALREKEELNGKWLQILEAARRERVDLDAKSSALRGRCAVLKERRGRLQQEVDRSRAQL 106          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10652.455.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQC9_ECTSI1.680e-11760.77SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQD0_ECTSI1.090e-5687.39Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A836CK59_9STRA4.330e-3238.74P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5JHU8_9PHAE5.750e-2864.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 352..372
NoneNo IPR availableCOILSCoilCoilcoord: 143..163
NoneNo IPR availableCOILSCoilCoilcoord: 296..337
NoneNo IPR availableCOILSCoilCoilcoord: 203..237
NoneNo IPR availableGENE3D3.40.50.300coord: 1..404
e-value: 1.4E-15
score: 59.8
NoneNo IPR availablePANTHERPTHR43941FAMILY NOT NAMEDcoord: 1..539
NoneNo IPR availablePANTHERPTHR43941:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2coord: 1..539
IPR038729Rad50/SbcC-type AAA domainPFAMPF13476AAA_23coord: 1..70
e-value: 3.6E-8
score: 34.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..224

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10652contigS-dermatodea_contig10652:428..7290 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10652.455.1mRNA_S-dermatodea_contig10652.455.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10652 428..7290 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10652.455.1 ID=prot_S-dermatodea_contig10652.455.1|Name=mRNA_S-dermatodea_contig10652.455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=551bp
ITGPNGAGKSTLLNAILFGLGESAAQVGARQNSELASAAHAEVELLFRSV
SRGVSDVKVSSAVSRTNGQRTFAFSGQKLPKHRFDHFLRTRLGIATGNPF
WKVSQDGIHQLLQASPHALHDTLCEVSGTKAINAHRSNALKQLGRWKKSI
ADIQLNIAALEEAVGREGAHLVAMDRVRELAIELNAIPGEMAVVDDEIAR
AELLAAERLVERLGSDMKGLEEDKSDIDERLHVLRAEATQLREGRGGVDG
NDESEALQKDLLVTLTDLAQASTEVKLERAALREKGELNAKWGQILREAR
AERIELETRSAGLRGRCALLKERRGRLEQEIARSRAQLSTDEGSAGGRGR
SVDTARRALDDLNASVGRAEARRVTLSAAVTRVKAEVEENRSQALAATVA
VDEVWERMRQIGSPLLTTDDTERYLRRLEDQRSIQRSRQLDLSRSLESSK
LAVAAAARRVGAPQWCSQLVTNSNDGSTIGDNTGDDGTGTGHRGCLFELF
ELRQGSGDKSFKALASLLSSSLTVWVCESSRHADQALDLARANGAGLRVW
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038729Rad50/SbcC_AAA
IPR027417P-loop_NTPase