prot_S-dermatodea_contig10322.238.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10322.238.1
Unique Nameprot_S-dermatodea_contig10322.238.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length106
Homology
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BLAST of mRNA_S-dermatodea_contig10322.238.1 vs. uniprot
Match: A0A6H5JKL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.110e-26
Identity = 66/114 (57.89%), Postives = 78/114 (68.42%), Query Frame = 0 
Query:    3 FATLRVVIGLPAFPPAVGKSKPGMIMGMVLASVPTLGKVLAFGTMVKSILSDTTLVVTGTVMTLALCLGANEGSGPIGFAGSLFGGFGRL---IFGAEDD--------GSLKEL 105
            F+ +RVV+GLPAFP A   SKPGM+MGMVLA+VPTLGKVLA+G +VKSI SDT LVV GTV+TLAL L   EG+GP   AGS+ G  G       G+E+         G LKEL
Sbjct:  227 FSGVRVVLGLPAFPAAQSTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEGDYSTGGGGGGLKEL 340
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BLAST of mRNA_S-dermatodea_contig10322.238.1 vs. uniprot
Match: D7G2W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W5_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 7.810e-25
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 0 
Query:    3 FATLRVVIGLPAFPPAVGKSKPGMIMGMVLASVPTLGKVLAFGTMVKSILSDTTLVVTGTVMTLALCLGANEGSGPIGFAGSLFGGFGRL---IFGAEDD------GSLKEL 105
            F+ +RV++GLPAFP A   SKPGM+MGMVLA+VPTLGKVLA+G +VKSI SDT LVV GTV+TLAL L   EG+GP   AGS+ G  G       G+E+       G LKEL
Sbjct:  462 FSGVRVMLGLPAFPAANPTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLFSPSFQGSEEGDYSGGGGDLKEL 573
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10322.238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKL1_9PHAE3.110e-2657.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2W5_ECTSI7.810e-2558.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..105
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10322contigS-dermatodea_contig10322:266..5284 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10322.238.1mRNA_S-dermatodea_contig10322.238.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10322 196..5325 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10322.238.1 ID=prot_S-dermatodea_contig10322.238.1|Name=mRNA_S-dermatodea_contig10322.238.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MVFATLRVVIGLPAFPPAVGKSKPGMIMGMVLASVPTLGKVLAFGTMVKS
ILSDTTLVVTGTVMTLALCLGANEGSGPIGFAGSLFGGFGRLIFGAEDDG
SLKEL*
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