prot_S-dermatodea_contig10285.213.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10285.213.1
Unique Nameprot_S-dermatodea_contig10285.213.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length375
Homology
BLAST of mRNA_S-dermatodea_contig10285.213.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 1.140e-112
Identity = 213/380 (56.05%), Postives = 258/380 (67.89%), Query Frame = 0
Query:    3 GHWDKALAWVDAAIEEGLAPTTGIFCEAITACGRGGAWRRSLSVMH-DMSVHWVFPDKFCCNAAISRACADAGEVKEALRVLDEKLFGSNGANGFSYSPILDALARQGDADLALRLLREIKAGTGRTPNCWHYGSAFLAFLNAGDEPGALSILSEWRAIQLA---EVAGGMAIGTQEE-GGRGTGTEG-STHGNSAATSGEEGWRG-KPGAGTGEHDFSRNFLRTIPATAPGERFQPQDLVALAAAHADAGRWSESLDVLETAKEVSRAARAGIRAAANELLLGRGGKGPRLFLLGVCVCVCGSGLASWREVAARNSGATARSEEAARALRACFESAVEALGRAGRHEQALRVLQEGVSAASKSGLRLNPSCCVPALRAC 375
            G WD+AL+WVDAA++ GL  T  +FC  I A GRGG WRRSLSV++ DM  + V PDKFC N A+ RACADAG+VKEAL +LD+ L G  G N FSYS I+DALARQGDA+L LRLLREI   TG +PN WHYG  FL+FL AGDE GAL+I SEWR IQ     E    M  G        G  +E  S  G +   S + G R  K GA   + +  R  +  + A APG+ FQP DL+ LAA HAD G WSE LDVL TA+EVSR ARA +RA ANELLLGR  +G  +  +G      G+GLASWR+VAA+NS AT R +EA++ALR C+ESAVEALGRAGRH+QAL+  +EG S   K GL ++P+C VPALR+C
Sbjct:  442 GRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMAL-RACADAGQVKEALDILDQNLSGQRGVNAFSYSSIIDALARQGDAELGLRLLREIHVSTGYSPNAWHYGGVFLSFLKAGDETGALAIQSEWRDIQACNAREATERMRPGADRSFSANGDSSERRSRSGRTDPNSDKNGARSAKRGAAIQDPEGQRAVVE-LAAVAPGDHFQPLDLLCLAAFHADNGAWSECLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVIGNVGATTGFAGAGLASWRQVAAKNSEATERVDEASKALRGCYESAVEALGRAGRHKQALQA-KEGASVTVKHGLSMDPACFVPALRSC 818          
BLAST of mRNA_S-dermatodea_contig10285.213.1 vs. uniprot
Match: D7G394_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G394_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.060e-47
Identity = 96/155 (61.94%), Postives = 120/155 (77.42%), Query Frame = 0
Query:  221 IPATAPGERFQPQDLVALAAAHADAGRWSESLDVLETAKEVSRAARAGIRAAANELLLGRGGKGPRLFLLGVCVCVCGSGLASWREVAARNSGATARSEEAARALRACFESAVEALGRAGRHEQALRVLQEGVSAASKSGLRLNPSCCVPALRAC 375
            + A APG+RFQP DL+ LAA HAD G WS+ LDVL TA+EVSR ARA +RA ANELLLGR  +G  +  +G    V G+GLASWR+VAA NS AT R++EA++ALR C+ESAVEALGRAGRH++AL+VL+EG S   K GL ++P+C V ALR+C
Sbjct:   54 LAAAAPGDRFQPLDLLCLAAFHADNGAWSDCLDVLGTAQEVSRTARAAVRAKANELLLGRTERGEVVGNVGATTGVAGAGLASWRQVAAENSEATERADEASKALRGCYESAVEALGRAGRHKEALQVLEEGASVTVKHGLSMDPACFVSALRSC 208          
BLAST of mRNA_S-dermatodea_contig10285.213.1 vs. uniprot
Match: D7G393_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G393_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.210e-30
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 0
Query:    3 GHWDKALAWVDAAIEEGLAPTTGIFCEAITACGRGGAWRRSLSVMHD-MSVHWVFPDKFCCNAAISRACADAGEVKEALRVLDEKLFGSNGANGFSYSPILDALARQ 108
            G WD+AL+WVDAA++ GL  T  +FC  I A GRG  WRRSLSV++D M  + V PDKFC N A+ RACADAG+VKEAL +LD+ L G  G N FSYS I+DALARQ
Sbjct:  348 GRWDQALSWVDAAVDAGLELTASVFCAIIIAFGRGREWRRSLSVVYDDMPAYEVDPDKFCYNMAL-RACADAGQVKEALDILDQDLSGQRGVNAFSYSSIIDALARQ 453          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10285.213.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KYW8_9PHAE1.140e-11256.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G394_ECTSI4.060e-4761.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G393_ECTSI2.210e-3061.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 96..123
e-value: 0.0028
score: 15.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 96..122
e-value: 0.1
score: 12.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..204
e-value: 2.9E-25
score: 91.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10285contigS-dermatodea_contig10285:195..7321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10285.213.1mRNA_S-dermatodea_contig10285.213.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10285 195..7321 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10285.213.1 ID=prot_S-dermatodea_contig10285.213.1|Name=mRNA_S-dermatodea_contig10285.213.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=375bp
RAGHWDKALAWVDAAIEEGLAPTTGIFCEAITACGRGGAWRRSLSVMHDM
SVHWVFPDKFCCNAAISRACADAGEVKEALRVLDEKLFGSNGANGFSYSP
ILDALARQGDADLALRLLREIKAGTGRTPNCWHYGSAFLAFLNAGDEPGA
LSILSEWRAIQLAEVAGGMAIGTQEEGGRGTGTEGSTHGNSAATSGEEGW
RGKPGAGTGEHDFSRNFLRTIPATAPGERFQPQDLVALAAAHADAGRWSE
SLDVLETAKEVSRAARAGIRAAANELLLGRGGKGPRLFLLGVCVCVCGSG
LASWREVAARNSGATARSEEAARALRACFESAVEALGRAGRHEQALRVLQ
EGVSAASKSGLRLNPSCCVPALRAC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf