mRNA_S-dermatodea_contig9994.17910.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9994.17910.1
Unique NamemRNA_S-dermatodea_contig9994.17910.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9994.17910.1 vs. uniprot
Match: A0A6H5KPH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 4.730e-62
Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 3 
Query:    3 AFKDSLMWVDGAADESLGSPRWKLFMFSPTIGCTRIAELLNFSVKRFCSPKYMRVFAPTGESVDGWSAAQNVKKMHPAAYELAVTANLREVLYTIKARTVVMISAARGGGLTPAQAAAETA 365
            +FKDSLMW+DGAADESLG PRWKLFMFSPTIGCTRIAELLNFSVKRFCS KYMRVFAPTGE+VDGWSAAQ VKK HPAAYELAVTANLREVLY IKAR V+M+S+ARG GL+PAQ AAE A
Sbjct:  530 SFKDSLMWIDGAADESLGGPRWKLFMFSPTIGCTRIAELLNFSVKRFCSFKYMRVFAPTGEAVDGWSAAQKVKKSHPAAYELAVTANLREVLYAIKARAVLMVSSARGAGLSPAQVAAEAA 650
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BLAST of mRNA_S-dermatodea_contig9994.17910.1 vs. uniprot
Match: D8LPR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR1_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.950e-47
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 3 
Query:   78 MFSPTIGCTRIAELLNFSVKRFCSPKYMRVFAPTGESVDGWSAAQNVKKMHPAAYELAVTANLREVLYTIKARTVVMISAARGGGLTPAQAAAETAMNGGDG 383
            MFSPTIGCTRIAELLNFSVKRFCS KYMRVFAPTGE+VDGWSAAQ VKK HPAAYELAVTANLREVLY IKAR V+M+S+ARG GL+PAQ AAE A   GDG
Sbjct:    1 MFSPTIGCTRIAELLNFSVKRFCSFKYMRVFAPTGEAVDGWSAAQKVKKSHPAAYELAVTANLREVLYAIKARAVLMVSSARGAGLSPAQVAAEAAAAAGDG 102
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9994.17910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPH5_9PHAE4.730e-6286.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPR1_ECTSI1.950e-4784.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9994contigS-dermatodea_contig9994:5400..6945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3.7e-39
Seed eggNOG ortholog2880.D8LPR1
EggNOG OGs2CMCB@1,2QPYF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size385
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9994.17910.1prot_S-dermatodea_contig9994.17910.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9994 5400..6925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.3529642-CDS-S-dermatodea_contig9994:5399..55101622925442.3529642-CDS-S-dermatodea_contig9994:5399..5510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9994 5400..5510 -
1694079936.555567-CDS-S-dermatodea_contig9994:5399..55101694079936.555567-CDS-S-dermatodea_contig9994:5399..5510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9994 5400..5510 -
1622925442.3644032-CDS-S-dermatodea_contig9994:5644..57281622925442.3644032-CDS-S-dermatodea_contig9994:5644..5728Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9994 5645..5728 -
1694079936.5799732-CDS-S-dermatodea_contig9994:5644..57281694079936.5799732-CDS-S-dermatodea_contig9994:5644..5728Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9994 5645..5728 -
1622925442.3780143-CDS-S-dermatodea_contig9994:5973..60641622925442.3780143-CDS-S-dermatodea_contig9994:5973..6064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9994 5974..6064 -
1694079936.5964715-CDS-S-dermatodea_contig9994:5973..60641694079936.5964715-CDS-S-dermatodea_contig9994:5973..6064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9994 5974..6064 -
1622925442.3881571-CDS-S-dermatodea_contig9994:6848..69251622925442.3881571-CDS-S-dermatodea_contig9994:6848..6925Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9994 6849..6925 -
1694079936.6079977-CDS-S-dermatodea_contig9994:6848..69251694079936.6079977-CDS-S-dermatodea_contig9994:6848..6925Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9994 6849..6925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.3991554-UTR-S-dermatodea_contig9994:6925..69451622925442.3991554-UTR-S-dermatodea_contig9994:6925..6945Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9994 6926..6945 -
1694079936.6174884-UTR-S-dermatodea_contig9994:6925..69451694079936.6174884-UTR-S-dermatodea_contig9994:6925..6945Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9994 6926..6945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9994.17910.1

>prot_S-dermatodea_contig9994.17910.1 ID=prot_S-dermatodea_contig9994.17910.1|Name=mRNA_S-dermatodea_contig9994.17910.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MWVDGAADESLGSPRWKLFMFSPTIGCTRIAELLNFSVKRFCSPKYMRVF
APTGESVDGWSAAQNVKKMHPAAYELAVTANLREVLYTIKARTVVMISAA
RGGGLTPAQAAAETAMNGGDG
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mRNA from alignment at S-dermatodea_contig9994:5400..6945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9994.17910.1 ID=mRNA_S-dermatodea_contig9994.17910.1|Name=mRNA_S-dermatodea_contig9994.17910.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1546bp|location=Sequence derived from alignment at S-dermatodea_contig9994:5400..6945- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGTTCAAGGACTCTCTCATGTGGGTGGATGGTGCCGCGGACGAGAGC
CTCGGCAGCCCTCGGTGGAAGCTCTTCATGTTCTCCCCCACCATCGGGTA
CGTATTCGTCTATTACTGTTGCTAAAAATATTAAGTACTGGTAGTAAACA
GTATCTTTAGCCCGCGTCATGTTTTACAATATTTACCACGACCTCGTTTC
GTGTTTTGTTTATATGCTGTGATATTAGAGCTACAATATTACGTGCGCCT
GATTTTTTTGTCCCCCTTCTGTTTGTTTTTGTCTGGGTTGTATTATATTA
ATATGATAGTGTCGTATGATATACTGTACACAGTTGTTATACTTGTAGTA
CAGTAGGTAGCCACGGCTAGGCTGGCTAGGCTATTGTATTAATATTCATA
TTCATATTGTTAAAGAAGTAACAGGTTACGCCGTGAGGTGAAAAATCATA
CTCTTGGCTTGGTAGATGTTTCACCGCCTCGACTCTAAATCGCCGTTATT
TTTTTTCCAGAAAAATTGTCTCTAATACATCGCTATTAAAAACGTTCATC
GTTCCTTTAGTATTAGTATACAAGTATTGTGCTATGATACATCAACTCAG
TCTGCTAAAGGGATCAACCGTTGTCCTCCGTCTACAAGAGCGGTACTTGT
AGTATTAGTACTTCGTATTAGTATTAGTGTTAGTGTTATCATTAGTATTA
GAATACTGCTTGAAGTATTAGTGTTAAGTGTTAATAGTGCTTGCTTTCTT
CCTTTTGTGTATTTTTGTCCTTGTCTTAGTGTAACGCGTAACGTAACAAG
CGCTCGCTTTAAACGGTGCTCTCTGCATCGCTTGCGCACATAACATGCAC
GCCCGGGCGGCGGCGGCGGCGGCGATAACAGGTGCACGAGAATCGCGGAG
CTGCTGAACTTCAGCGTCAAGCGCTTCTGCTCCCCCAAGTACATGCGAGT
CTTCGCGCCCACCGGAGAATCGGTGAGACTTCGTCCGCGAGAAACCGGAA
ATCTCAGGCTTTTGTTTTTAGGCTACAAGTTCAGGGGCAGTATCTAGCTT
TCTTGTTTGTAAAAACAACGAAAACTACAAGTATGTTTCATCAATACTGA
ATTCGTGTATTGTTTTTTTCTTGTTTTCGAGGAAGGGGAAATAAATTGTT
GAAGTATTTGTCGACGCCGTCCGTCCCTAACGCCCCATCTTTGTTTTATT
TTTTTTATTTTTTACAGGTGGACGGGTGGAGCGCGGCTCAGAACGTGAAG
AAGATGCACCCGGCGGCGTACGAGCTCGCCGTCACGGCTAACTTGAGAGA
GGTGGGTTTTGTCAGAAACGGCGCCAGCTTTGCTTTCACCCACCCTGTTT
ATGGCACTATAGTAATAATATGTGTAGAGCTATGTGTGCAGATTCAAAAC
AAGCTACCCCCCCCCCCCCCTCCTACCGCATGCAGGTTCTATACACCATC
AAGGCGCGGACGGTAGTGATGATCAGCGCTGCAAGAGGAGGAGGGCTGAC
GCCGGCACAGGCAGCAGCCGAAACCGCGATGAACGGGGGCGATGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9994:5400..6945-

>mRNA_S-dermatodea_contig9994.17910.1 ID=mRNA_S-dermatodea_contig9994.17910.1|Name=mRNA_S-dermatodea_contig9994.17910.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig9994:5400..6945- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGGTGGATGGTGCCGCGGACGAGAGCCTCGGCAGCCCTCGGTGGAA
GCTCTTCATGTTCTCCCCCACCATCGGATGTGGGTGGATGGTGCCGCGGA
CGAGAGCCTCGGCAGCCCTCGGTGGAAGCTCTTCATGTTCTCCCCCACCA
TCGGGTGCACGAGAATCGCGGAGCTGCTGAACTTCAGCGTCAAGCGCTTC
TGCTCCCCCAAGTACATGCGAGTCTTCGCGCCCACCGGAGAATCGGTGCA
CGAGAATCGCGGAGCTGCTGAACTTCAGCGTCAAGCGCTTCTGCTCCCCC
AAGTACATGCGAGTCTTCGCGCCCACCGGAGAATCGGTGGACGGGTGGAG
CGCGGCTCAGAACGTGAAGAAGATGCACCCGGCGGCGTACGAGCTCGCCG
TCACGGCTAACTTGAGAGAGGTGGACGGGTGGAGCGCGGCTCAGAACGTG
AAGAAGATGCACCCGGCGGCGTACGAGCTCGCCGTCACGGCTAACTTGAG
AGAGGTTCTATACACCATCAAGGCGCGGACGGTAGTGATGATCAGCGCTG
CAAGAGGAGGAGGGCTGACGCCGGCACAGGCAGCAGCCGAAACCGCGATG
AACGGGGGCGATGGGGTTCTATACACCATCAAGGCGCGGACGGTAGTGAT
GATCAGCGCTGCAAGAGGAGGAGGGCTGACGCCGGCACAGGCAGCAGCCG
AAACCGCGATGAACGGGGGCGATGGG
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