mRNA_S-dermatodea_contig9990.17908.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9990.17908.1
Unique NamemRNA_S-dermatodea_contig9990.17908.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: D7FHG3_ECTSI (40S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG3_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 2.280e-124
Identity = 190/207 (91.79%), Postives = 194/207 (93.72%), Query Frame = 3 
Query:  171 FGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 791
             GISRDSRHKRRETGG+RSKYRKKRKFEMGRPAANTKLGH RVHPVRCRGGNMKYRALRLD+GNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFK WYE HYGVVIG+KKGKKA P EEE V  KSDHV+RKLAKRQ DR L T LDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK
Sbjct:    1 MGISRDSRHKRRETGGRRSKYRKKRKFEMGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPVEEEAVA-KSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 206
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: A0A7S2USH6_9STRA (40S ribosomal protein S8 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH6_9STRA)

HSP 1 Score: 318 bits (814), Expect = 2.710e-103
Identity = 161/207 (77.78%), Postives = 177/207 (85.51%), Query Frame = 3 
Query:  171 FGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEE--EEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 785
             GISRDSRHKRR TGGKR+K+RKKRKFEMGRPAANTKLG  RVHPVRC GGNMKYRA+RL+ G +SWGTE  +RK RILDVVYNASNNELVRTKTLVKNA+V++DAHPFK WYE HYGVVIG KKGK+ P K+E  +E   KS HVQRK+AKRQ DR L  +LD+Q   GR LACISSRPGQSGR DGYILEGKELEFYQKMLA+KK
Sbjct:   21 MGISRDSRHKRRHTGGKRAKFRKKRKFEMGRPAANTKLGTKRVHPVRCMGGNMKYRAMRLEAGTYSWGTEAISRKARILDVVYNASNNELVRTKTLVKNAVVLIDAHPFKAWYEAHYGVVIGKKKGKRMPKKDEADDEDAKKSSHVQRKIAKRQKDRTLMQNLDDQFVGGRLLACISSRPGQSGRADGYILEGKELEFYQKMLARKK 227
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: A0A836CLT8_9STRA (40S ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT8_9STRA)

HSP 1 Score: 314 bits (805), Expect = 3.190e-102
Identity = 159/211 (75.36%), Postives = 181/211 (85.78%), Query Frame = 3 
Query:  171 FGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEE----EEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 791
             GISRDSRHKRRETGGKR + RKKRKFE+GRPAANTK+G +R+  VRCRGGN+K+RALRL+TGN+SWGTEVCTRKTRILDVVYNASNNELVRTKTLVK A+V +DA PF++WYE HYG+ IG+KKGK+A   +     +E   KSDHVQRKLA RQ  R L+T LDEQ ASGR LACISSRPGQSGRCDGYILEGKELEFYQK+L++KK K
Sbjct:    1 MGISRDSRHKRRETGGKRCQVRKKRKFELGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 211
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: A0A7S1Z304_TRICV (40S ribosomal protein S8 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z304_TRICV)

HSP 1 Score: 298 bits (763), Expect = 4.790e-96
Identity = 151/204 (74.02%), Postives = 170/204 (83.33%), Query Frame = 3 
Query:  171 FGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKK 782
             GISR+ RHKRRETGG+R KYRKKRKFE+GRPAA TK+G  RVH VRCRGGN+K+RALRLD+GNFSWGTEVCTRK RILDV YNASNNELVRTKTLVK AIV++DAHPFK+WYE HYGV IG+KKG+KA    +EE   KS+ VQRKLA RQ +R LE  LD Q ASGR LA I+SRPGQ GRCDG +LEG EL FYQ+ +AKK
Sbjct:    1 MGISREGRHKRRETGGRREKYRKKRKFELGRPAAMTKIGEKRVHEVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLIDAHPFKEWYEAHYGVKIGVKKGQKAHA--DEEAPKKSERVQRKLAARQKNRTLEQPLDHQFASGRLLAKITSRPGQCGRCDGVVLEGAELHFYQRQMAKK 202
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: D0MUS0_PHYIT (40S ribosomal protein S8 n=15 Tax=Phytophthora TaxID=4783 RepID=D0MUS0_PHYIT)

HSP 1 Score: 298 bits (763), Expect = 7.000e-96
Identity = 155/209 (74.16%), Postives = 174/209 (83.25%), Query Frame = 3 
Query:  165 EHFGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 791
            EH  ISRDSRHKRRETGGKR ++RKKRKFE+GR  ANTKLG  RVH VR RGG++K+RAL L+TGNFSWGTEVC RKTRILDVVYNASNNELVRTKTLVK A+V+VDA PF++WY+ HYGV IGIKK     P+++EE V KSDHV RKLA RQ  R L+  +DEQV SGR LA ISSRPGQSGR DGY+LEGKELEFYQ+ LA KKSK
Sbjct:    7 EHSSISRDSRHKRRETGGKRKQFRKKRKFELGRQPANTKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYDAHYGVKIGIKKN---TPQQQEEEVKKSDHVLRKLANRQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKKSK 212
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: A0A6U3PIT0_9STRA (40S ribosomal protein S8 n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3PIT0_9STRA)

HSP 1 Score: 296 bits (757), Expect = 3.580e-95
Identity = 150/204 (73.53%), Postives = 171/204 (83.82%), Query Frame = 3 
Query:  171 FGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKK 782
             GI+R+ RHKRRETGG+R KYRKKRKFEMGRPAA TK+G  RVH VR RGGNMK+RALRLD+GNFSWGTEVCTRK R+LDV YNASNNELVRTKTLVK AIV++DAHPFK WYE+HYG+ IG+KKG  A     ++ V KSDHVQRKLA RQ  R+LE ++D Q+ASGR LA I+SRPGQSGRCDG +LEG EL FYQKM+ KK
Sbjct:    1 MGITREGRHKRRETGGRREKYRKKRKFEMGRPAAMTKIGEKRVHGVRGRGGNMKWRALRLDSGNFSWGTEVCTRKVRVLDVTYNASNNELVRTKTLVKGAIVLIDAHPFKSWYESHYGLKIGVKKGSTAL----DDDVKKSDHVQRKLASRQKGRELEQAIDNQMASGRLLAKITSRPGQSGRCDGIVLEGAELHFYQKMMHKK 200
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: M4BLW0_HYAAE (40S ribosomal protein S8 n=5 Tax=Peronosporaceae TaxID=4777 RepID=M4BLW0_HYAAE)

HSP 1 Score: 296 bits (757), Expect = 1.510e-94
Identity = 156/206 (75.73%), Postives = 173/206 (83.98%), Query Frame = 3 
Query:  174 GISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 791
            GISRDSRHKRRETGGKR ++RKKRKFE+GR  A TKLG  RVH VR RGG++K+RAL L+TGNFSWGTEVC RKTRILDVVYNASNNELVRTKTLVK A+V+VDA PF++WYE HYGV IGIKK   A   EEEE V KS HV RKLAKRQ  R+L++ +D+QV SGR LA ISSRPGQSGR DGYILEGKELEFYQ+ LA KKSK
Sbjct:   38 GISRDSRHKRRETGGKRKQFRKKRKFEIGRQPAATKLGGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGIKKN--AEKIEEEEEVKKSSHVMRKLAKRQRTRELDSKIDDQVTSGRLLAVISSRPGQSGRADGYILEGKELEFYQRKLATKKSK 241
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: A0A812SFI7_SYMMI (40S ribosomal protein S8 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SFI7_SYMMI)

HSP 1 Score: 294 bits (753), Expect = 1.890e-94
Identity = 147/205 (71.71%), Postives = 173/205 (84.39%), Query Frame = 3 
Query:  171 FGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 785
             GISRDSRHKRR TGG+++  +KKR++E+GRP ANTKLG SR+H VRCRGGN+K+RA+RLDTGNFSWG+EVCTRKTR+LDVVYNASNNELVRTKTLVKN+I+ VDA PF+ WYE HYGV +G+KK KK    E E+   KS  +QRKLA+RQ  R L+ +LD+  +SGR LACISSRPGQSGRCDGYILEGKEL+FY KML KKK
Sbjct:    1 MGISRDSRHKRRATGGRKANLKKKRQYELGRPPANTKLGASRIHTVRCRGGNLKFRAMRLDTGNFSWGSEVCTRKTRVLDVVYNASNNELVRTKTLVKNSIIQVDATPFRAWYEQHYGVKVGVKKAKKTAA-EGEDTEKKSHSLQRKLAERQKTRTLDPALDDGFSSGRLLACISSRPGQSGRCDGYILEGKELDFYSKMLKKKK 204
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: A0A7S2JRG2_9STRA (40S ribosomal protein S8 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRG2_9STRA)

HSP 1 Score: 293 bits (751), Expect = 2.960e-94
Identity = 153/204 (75.00%), Postives = 170/204 (83.33%), Query Frame = 3 
Query:  171 FGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKK 782
             GI+R  R+KRRETGG+R+K+RKKRKFEMGRPAA TK+G  RV  VRCRGGNMKYRALRLDTGNFSWGTEVCTRK RILDV YNASNNELVRTKTLVK AIV+VD HPFK WYE+HYGV  G++  K  PP +E+E   KS+HVQRKLA RQ  R LE +LD Q+ASGRFLA I+SRPGQSGRCDG ILEG EL FYQKM+ KK
Sbjct:    1 MGITRTGRNKRRETGGRRAKFRKKRKFEMGRPAAMTKIGEKRVREVRCRGGNMKYRALRLDTGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLVDCHPFKTWYESHYGVKTGLRGAK--PPVDEDEAK-KSNHVQRKLAARQKTRSLEPTLDSQLASGRFLAKITSRPGQSGRCDGVILEGPELAFYQKMMHKK 201
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BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Match: B8CB96_THAPS (40S ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=2696291 RepID=B8CB96_THAPS)

HSP 1 Score: 293 bits (750), Expect = 4.050e-94
Identity = 148/203 (72.91%), Postives = 170/203 (83.74%), Query Frame = 3 
Query:  171 FGISRDSRHKRRETGGKRSKYRKKRKFEMGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKKAPPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAK 779
             GI+R+ +HKRRETGG+R+++RKKRKFE+GRPAA TK+G  R+H VRCRGGN+K+RALRLD+GNFSWGTEVCTRK R+LDVVYNASNNELVRTKTLVK AIV+VDAHPFK WYE+HYGV IGIKKG+ A    EEE V +S HVQRKLA RQ  R LE ++D Q+ASGR  A I+SRPGQSGRCDG ILEG EL FY K L K
Sbjct:    1 MGITREGKHKRRETGGRRAQFRKKRKFELGRPAAMTKIGEKRIHTVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRVLDVVYNASNNELVRTKTLVKGAIVLVDAHPFKSWYESHYGVKIGIKKGQAAA---EEEEVKQSSHVQRKLAARQKGRSLEDAIDHQIASGRLYAKITSRPGQSGRCDGQILEGAELSFYLKQLKK 200
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9990.17908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG3_ECTSI2.280e-12491.7940S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2USH6_9STRA2.710e-10377.7840S ribosomal protein S8 n=1 Tax=Fibrocapsa japoni... [more]
A0A836CLT8_9STRA3.190e-10275.3640S ribosomal protein S8 n=1 Tax=Tribonema minus T... [more]
A0A7S1Z304_TRICV4.790e-9674.0240S ribosomal protein S8 n=1 Tax=Trieres chinensis... [more]
D0MUS0_PHYIT7.000e-9674.1640S ribosomal protein S8 n=15 Tax=Phytophthora Tax... [more]
A0A6U3PIT0_9STRA3.580e-9573.5340S ribosomal protein S8 n=3 Tax=Lithodesmiaceae T... [more]
M4BLW0_HYAAE1.510e-9475.7340S ribosomal protein S8 n=5 Tax=Peronosporaceae T... [more]
A0A812SFI7_SYMMI1.890e-9471.7140S ribosomal protein S8 n=1 Tax=Symbiodinium micr... [more]
A0A7S2JRG2_9STRA2.960e-9475.0040S ribosomal protein S8 n=1 Tax=Leptocylindrus da... [more]
B8CB96_THAPS4.050e-9472.9140S ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9990contigS-dermatodea_contig9990:991..7116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.2
Seed ortholog evalue2.5e-87
Seed eggNOG ortholog2880.D7FHG3
Preferred nameRPS8
KEGG koko:K02995
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2007@1,KOG3283@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S8e/ribosomal biogenesis NSA2
Ec32 orthologEc-25_002510.1
Exons6
Model size1525
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9990.17908.1prot_S-dermatodea_contig9990.17908.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9990 1722..5449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.135248-UTR-S-dermatodea_contig9990:990..17211622925442.135248-UTR-S-dermatodea_contig9990:990..1721Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9990 991..1721 -
1694079936.3906388-UTR-S-dermatodea_contig9990:990..17211694079936.3906388-UTR-S-dermatodea_contig9990:990..1721Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9990 991..1721 -
1622925442.2159538-UTR-S-dermatodea_contig9990:5449..55291622925442.2159538-UTR-S-dermatodea_contig9990:5449..5529Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9990 5450..5529 -
1694079936.4605608-UTR-S-dermatodea_contig9990:5449..55291694079936.4605608-UTR-S-dermatodea_contig9990:5449..5529Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9990 5450..5529 -
1622925442.2270792-UTR-S-dermatodea_contig9990:6942..71161622925442.2270792-UTR-S-dermatodea_contig9990:6942..7116Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9990 6943..7116 -
1694079936.4711058-UTR-S-dermatodea_contig9990:6942..71161694079936.4711058-UTR-S-dermatodea_contig9990:6942..7116Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9990 6943..7116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.1486282-CDS-S-dermatodea_contig9990:1721..18051622925442.1486282-CDS-S-dermatodea_contig9990:1721..1805Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 1722..1805 -
1694079936.4028487-CDS-S-dermatodea_contig9990:1721..18051694079936.4028487-CDS-S-dermatodea_contig9990:1721..1805Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 1722..1805 -
1622925442.1578841-CDS-S-dermatodea_contig9990:2324..24561622925442.1578841-CDS-S-dermatodea_contig9990:2324..2456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 2325..2456 -
1694079936.4119093-CDS-S-dermatodea_contig9990:2324..24561694079936.4119093-CDS-S-dermatodea_contig9990:2324..2456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 2325..2456 -
1622925442.168792-CDS-S-dermatodea_contig9990:2717..28161622925442.168792-CDS-S-dermatodea_contig9990:2717..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 2718..2816 -
1694079936.4208698-CDS-S-dermatodea_contig9990:2717..28161694079936.4208698-CDS-S-dermatodea_contig9990:2717..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 2718..2816 -
1622925442.1915517-CDS-S-dermatodea_contig9990:3186..32841622925442.1915517-CDS-S-dermatodea_contig9990:3186..3284Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 3187..3284 -
1694079936.4301429-CDS-S-dermatodea_contig9990:3186..32841694079936.4301429-CDS-S-dermatodea_contig9990:3186..3284Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 3187..3284 -
1622925442.203522-CDS-S-dermatodea_contig9990:5322..54491622925442.203522-CDS-S-dermatodea_contig9990:5322..5449Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 5323..5449 -
1694079936.4483192-CDS-S-dermatodea_contig9990:5322..54491694079936.4483192-CDS-S-dermatodea_contig9990:5322..5449Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9990 5323..5449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9990.17908.1

>prot_S-dermatodea_contig9990.17908.1 ID=prot_S-dermatodea_contig9990.17908.1|Name=mRNA_S-dermatodea_contig9990.17908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=180bp
MGRPAANTKLGHSRVHPVRCRGGNMKYRALRLDTGNFSWGTEVCTRKTRI
LDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYETHYGVVIGIKKGKK
APPKEEEEVVPKSDHVQRKLAKRQADRKLETSLDEQVASGRFLACISSRP
GQSGRCDGYILEGKELEFYQKMLAKKKSK*
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mRNA from alignment at S-dermatodea_contig9990:991..7116-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9990.17908.1 ID=mRNA_S-dermatodea_contig9990.17908.1|Name=mRNA_S-dermatodea_contig9990.17908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6126bp|location=Sequence derived from alignment at S-dermatodea_contig9990:991..7116- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTCCATAGGTACCACAGACCCGGACCCATGCCCTTCCCCTTCGCTCTG
CATCCTGACTCGCTTCGAGGGCGGCGTGTCCGGCGCCTGTTCACCTGCTG
ATCCCGCTCCCGCGGACAACGACCCCGGCATGTGAATACGGCCAGATCCT
TGAAGAGGGAACGTGAGCACTTTGGTGCGTTCGAAGTAACAGATAAGCTG
TTGTCAAGGCTTCTTTGTTGGCCCAAACCCGAAGCCTTGCTTGATATTCG
TCGGCAACTGTTTGTCCATTTCGAGGATGACAGAAGAAGGAAATATTTAC
GGGCTTCCATGTATTGCTAATTGCCGTATATTATGTATCCAGTGATTCTG
ATTGGCTAGATTTACTTGTCTCTTTGAATATGACATTGAAGTGTATAACA
GGTTTGCACTGAAAAGTGATAATGCGTTATTATGCGTGAGCGATTTTGAT
TGGCCAGGCTTGTGTGGCGCCAGGATTGAGCCCCTTGCCCTTGTGTGCCT
CAGTTGCTCTGTCCTCGTCGACGGACTCCTCCACCTGGTACTGCCATGGG
TGAGCCAAGTTGTTTGCCTCGTAGCGAGAAGTATGGTCGTTGTTACCGTC
GCGGGTTCGAGCAGGTAGAGCCTGGCGCCGGAAACTTCGTGGTTAATGCC
GGAGCCCCAAAGACGCGTGTCGCATATTTTGGGATGCTCCCTGGAGGATA
GACTTCAGCGGGAGAGCGTTTAGTGAGGGTCGCGTGTGCACCCTTCTCCT
TGAGCGGCCTGGGGCATAATGAAACTGGCAGCGTGACCCATGTGCTGCGT
GTGCCTACTGAAATCAGAGGAAGTTCGCCGAAGGTGGCGGGCTCGTGGTC
GCTGTTTTTGGGCGTAAAATCAGAGTGTGGCTTACAGAGGGCGATCATTG
CGAGAGATACTGGGATGGTGTGGTGGCTGCGGGTGTCCCAACCTGAGCCA
CACGAAACGGCGACACCACCTTCTGCCTCCTGCTTGCCTTGCGTACCCTG
CATGTTGTCCGGTCTCATCGTACGCGAGCCGGGTGCCGGGTTCTATTCGG
TATCTCGTTGATGCGGTGTTGAGTTTTTTATACACTTACACTTGTCAACG
AAAACGGCGTCCTCGCCACACACGCTGATGTGAGCGAACAAATCGTTTAC
TCTCAGGTTGGTACATAAAAAAGAGCGATGATTTATTATAGGAGGTAGAA
AACCATCACAACGCTGGGGCTCGGATTGGTTCTGGAGAGACGAGCTGGCC
GGCATGTCCAGGGCTGTGCCATCTTCACCTCGACGAGTAGATAGATAAGG
TGCAGCGCGTCAGAAACAATCGGGTCGCCTTGGACTAACTGACGGGAGCA
TACAGACCTAGAGTGTGCAGGTATCGAAAAGCCCTTCCCATGGCGCACGT
ACCATGATCCATGATACTGCCATCACAACTCCACTCAACTCTGCGAGGTT
CTCCCTCCGTCCACCTACCGTATACTACTTGTATCAATATTCAATAATGT
ACGAGTACCCCTGAAGAGTTGCCCCCGGAAACACACACTCACCGCTCTCT
CGACGCACACCCACAAAACACGGCCGTTTTTACCCAGGTATCTCTAGGGA
CTCGCGGCACAAGCGCCGCGAAACCGGCGGAAAGCGCTCCAAGTACAGGA
AAAAGAGGAAGTTCGAGATGGGCCGCCCCGCCGCAAACACCAAGCTTGGC
CACAGCCGCGTCCACCCCGTGCGCTGCCGCGGCGGTAACATGAAGTACCG
CGCGCTCAGGCTCGACACCGGCAACTTCAGCTGGGGAACCGAGGGTGAGA
GGAGCCATGATAGTGCATCGTTTCTTGCGATGGGCCGTGTTTTGGGAAGG
TGTGAGGGCGAGGCAGCGGCGAGCCATTTTGTGTGCTGGTTGTGTTCTGC
TGGGTAGGGGCGAGAGGGGCATGTGTGTGTAGCGTTCAAGCCACACAGCA
GCATCGGTGAGATGAGATAAGCCTCCAGTGGTGGAAGACCTGTGTAGCTC
CACGTATCTGACTGCTCACCCATGGAATGGAATCCCGCTGGGATACCTCA
AGACTGAAAATATGTTTTGAACACTAGCAGTGTCAGAGTAGCGGGTGATT
CCTCCGGCGCTACATTTACATTGTTTTACAAGTATTTTGGCAAGAAAGGC
AGCATCGAATGTCCTCACCGCGACACGCTGTTGGAGCCTTGGCGGTGGGT
GGGCCGTGAGAGACACGATTGGCGCCCAGTCTCACGATCCCGATCGCTCC
TGGGTCATTCAAAAGAGGAGATCCGAACTTTTTAGCGACACAAAGCATAT
TGTACCGGAAATACGGCGGCGGTCGCGTAAATAGCGAACGAGCGTCTGCG
ACGGATCCAAGGCCTCGCGAGAACAAAACTCCTGTTGAAACTCTGTTTTT
TTCAAATTACTTGTTGGTCTTGTGGTAGCGCCTGTGGCTGCTACCAGGTA
CCTGCTAGCTCCTGGGGTGTGCACAGAGTCTTGTAGTTTGTCTGTTTTTG
GTGTTTTTGAAGAGAAAAGGCAGCCGGAAGGCACACGACAGGGGTAATGA
CCCGGAGACATGAACCTTGGGCTTATGATTCCCTTCCTTGCCGTTCTCGC
CACCTTCGATACCGGTTCAGACAAAAAATATATAGGGCCAGGTGCTCTAC
TTTTCCCCAAATCCTCGTTATGTTTATTTGTTGCGAGGGGGTCCATCACG
AAACCGCCTGACCTCCAGCGTGGTCTGTCCAACAAACACCCTCTCTAAAA
GTGCAGAAGGTTGTCCGATCTCTCGTCTGAAACGCGCCTTCGTCCTGCCG
CGAACAAGACGGGGGCGGCAAGGAAAGCAGGAAACGGCAACAGGAAATTT
TGGCGTGGGATGATGGTGGTCGTCGCTTCTCGAGCACTATATATTAATAA
GATATCCTATCTCCGCTTTCGCCCGATCGCTCACGGTGAAGGATTGATAA
CATACAGGCGAGCCTCCCGATTAACCAGTTATTTGTGAGGGCAACCGCTT
GTTCCGATGTTAAAGCGCAAGCTGTACTTGCAGATGAAAACGAAACAACC
TTGGCCGAGCACTTGTAAAGTGCTCGGCGGCGGACGCATCACTGAAGCCT
CAAAGTCGTCTGCTGCAGAATTGGCCGTTGTAGACGCACGACGCGAGACC
GCCGCTCGGATCGTCGAGTCTTGCCTCCCATCTTGAGTCGGCAAACATTT
GACACCCGAGAGGCTTGCGAGGTCGCTGAGCCCTACACGCCTTAAACCAG
ACCCCTCCATCGTAGGCTCTAACGCCGTGTGCCGTTCCCTCAGCGCGAGA
GAAGACGTGCCATCCATCTGAACATATAAAGCCGCCCCTGTCGAAAACCT
ATGGTGTCTGCCGCAACACAGTGCGTGTGTTAAGCGCTAATGGCACCTTC
TAGGCAGGGGTATGACCGCAATTTTCGATTTTCAGTGTCCGCGGCCTTTC
CTGGGCCACTGCAAATAAAATCTTTTTTTAATACCTTGGACCTGGACGAG
ATATTATATATAGTAGCAAGCACGCCCTTGCGTTGAATAGCACCTGCACG
TCGTTTTTAGTCGTGCGCTTGTGCCATACCTTCGTGACCGAGCGATCTTT
AATTTCCTTGTTTTCCTAGAACTTACACTCTTTGACATTTTCGATGGTAA
CGTAAGCAGGAAAACCCTCAATCCGAGAGGCGGCCAAACGTCGAGGTCTC
CGCCCGACACGCGATCGTTGAGATACATATTTCACCCCTAGAGTGGACAT
CACCAGGAAACATATGTGGGTGGTTGTTTGTGCTCACCTGCTTACACGCT
CCCCCGCGTCGACGTCTTTCGAAACCATCCAGTCTGCACCCGCAAGACCC
GTATCCTGGACGTGGTCTACAACGCCAGCAACAACGAGCTGGTCCGCACC
AAGACCCTCGTGAAGAACGCCATCGTGGTGGTGAGTTTTTTCAAAAAACA
AGACGGAGTGAAGATTAGCGCATTTCTGTAGCGAAGGTAAGTGTGTGTCC
CAGTTTGGTGCGCCCTCGTTAGATTGTAGGTGGCGCAATAATATGCCTAC
GAGTAGAGCAGAGCCACACGGTTTCGCCGTATTATATTATATAGCCTTTG
GAGGGTGCGCTGTTCCAAACGTCGCCGATATCCGCTTTTTGTTGGTAAAG
TTATCAGTGGTGTCATGTGAGTATCGGCAGTGCAACAACAATTGTGGACT
TTAAGGCATGAAGCTCAATCGTAGAGAACAAGTATTTCCGGGCGGGTGGA
TGGTAGACAGACAACTAATAGTTTATTGTCCTACAAATGTCGGATCACAG
GTGGACGCGCACCCCTTCAAGAAGTGGTACGAGACCCACTACGGCGTGGT
GATCGGCATCAAGAAGGGCAAGAAGGCCCCCCCAAAGGAAGAGGAGGAGG
TGAGAGCAGAGCCACACGGTTTCGCCGTATTATATTTTATGTATGATGGC
GAGGATCTTCGTAGCCACATGGCCGCTAGCATATACCACGAGGCTTACGT
GTGCGGTTAGTTGGACATTTTCTATTGGCCAGTGCGTAGTTGCGAAAACT
GCGCAGCAAGCCACATTTGCGACCGCGCCGCTCACAGTGCGCTGTTTTTT
CTCCCTTTTTTCCCCTGTGCCCTGCGTTCGCCTGTTTTTTCTTGGGAATC
CCCCCCGCAGGTGGTGCCTAAGTCTGACCACGTCCAGCGCAAGCTGGCCA
AGCGCCAGGCTGACCGCAAGCTTGAAACCAGCCTCGACGAGCAGGTGGCT
TCCGGCCGTTTCCTCGCCTGCATCTCTTCCCGCCCGGGACAGGTGCGTGC
CGTATGATGATGTGGTGCCGCTTCTGATGCGTTTTTTATTTCGAGGTCGT
GAGCCTACGTAGGAGGACGATGGCAAAGCCATGACGTCATCTGAATGCTC
ACCAGTTCATGTGTCGGCTGGTTTTTTTACCTTGGCGTGACAGGTGTATG
GGTTAGTTAATCCACGGAGGGCTATTTTATTTATTCTCCAAAGATAGTGG
ACGTACGAAGGAAGATCGGGTCTTGTCTGTAGCGCCGGAGTTAAAAAATT
GTTTGTTCACTTTGCTGCGCTCGCGGCTGATTGGGCAGCCCATCTGACAC
CCCGTTCCGAGTTTTGCAGTCCTTACGAATATGTTCCGGATCGCGAAAGA
TGGTCGTGATTGGCCGAGCGACACCCTGCTCACTGCTGCAGAGGTTTTCG
CACGCATACGGGGATTTTCGAAAATTGGCCGCCTCCGGGTCGCCCGCCTG
TTGTGTTACATGCCCTTGACGATGTACTCTTTATGTAACTGTTTCCGTGC
GCCCCCCACAGTCCGGCCGCTGCGACGGTTACATCCTTGAGGGCAAGGAG
CTGGAGTTCTACCAGAAGATGCTGGCGAAGAAGAAGTCCAAGTAGATCAC
ACAGCGGCGGGACGTTCGTCCAGCATGACCTTTCGCGGGGTTTCGACCGC
CCAAGGAGCATTATTAGTCTGGGTGTTTGATTTTATTTTCAGACCTTTGC
TGATGTTGCACGATTGTGCGGCCGGGGCTGTTGCGTGGGTGGTGGTCGGC
GGGCTGTTTGTTGGCGACTAGGGCTGCTTTTTGCTTGCCGTAGATGCTGA
CTTCGTTACTGCGAGAGATACGGGCAGAGATGGGGCAACTAATAAAAAAC
CAGGAAAAAAAGTTCGGAAACTCGATGACCACCTCCGTACCTAAACGACT
TGTTTAGTGGCGTGGTTGGTCTATGTTCGCTGGAGTATGGATCACACGAA
GCTCAACACGTCGGTGCGTTTGACACTCGCGTCTTCGTACATGTCAACTC
TCTCTCTTTTGCGCGCACACCCTACCCTACAAAACGGCGTACGCCTTACG
TGTAGCCTTGAGGACCCCACATCGTGCGCATCTCGTTCATCTCGTTTTTC
GTGAAAAGTGTCACCGTTCACGATTCCATCCATTGTGGATTACCTCTCAC
TTGAACCTTCAACAAAAGTAGGCTTGAGCTGCACTGTACAAGGAGAGCCT
GCGATGCCCACGGCGTCGCCCGGAAACATACCGCGGGTCTTCTATAGTAG
GCTCGAAAAAAAAGAAGTTGGGTCGCTTTTGATGGCCCATTTTTGGAACA
TCGTGGCAAAACAATGTGAACAGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9990:991..7116-

>mRNA_S-dermatodea_contig9990.17908.1 ID=mRNA_S-dermatodea_contig9990.17908.1|Name=mRNA_S-dermatodea_contig9990.17908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at S-dermatodea_contig9990:991..7116- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCCGCCCCGCCGCAAACACCAAGCTTGGCCACAGCCGCGTCCACCC
CGTGCGCTGCCGCGGCGGTAACATGAAGTACCGCGCGCTCAGGCTCGACA
CCGGCAACTTCAGCTGGGGAACCGAGGATGGGCCGCCCCGCCGCAAACAC
CAAGCTTGGCCACAGCCGCGTCCACCCCGTGCGCTGCCGCGGCGGTAACA
TGAAGTACCGCGCGCTCAGGCTCGACACCGGCAACTTCAGCTGGGGAACC
GAGGTCTGCACCCGCAAGACCCGTATCCTGGACGTGGTCTACAACGCCAG
CAACAACGAGCTGGTCCGCACCAAGACCCTCGTGAAGAACGCCATCGTGG
TGTCTGCACCCGCAAGACCCGTATCCTGGACGTGGTCTACAACGCCAGCA
ACAACGAGCTGGTCCGCACCAAGACCCTCGTGAAGAACGCCATCGTGGTG
GTGGACGCGCACCCCTTCAAGAAGTGGTACGAGACCCACTACGGCGTGGT
GATCGGCATCAAGAAGGGCAAGAAGGCCCCCCCAAAGGAAGAGGAGGAGG
TGGACGCGCACCCCTTCAAGAAGTGGTACGAGACCCACTACGGCGTGGTG
ATCGGCATCAAGAAGGGCAAGAAGGCCCCCCCAAAGGAAGAGGAGGAGGT
GGTGCCTAAGTCTGACCACGTCCAGCGCAAGCTGGCCAAGCGCCAGGCTG
ACCGCAAGCTTGAAACCAGCCTCGACGAGCAGGTGGCTTCCGGCCGTTTC
CTCGCCTGCATCTCTTCCCGCCCGGGACAGGTGGTGCCTAAGTCTGACCA
CGTCCAGCGCAAGCTGGCCAAGCGCCAGGCTGACCGCAAGCTTGAAACCA
GCCTCGACGAGCAGGTGGCTTCCGGCCGTTTCCTCGCCTGCATCTCTTCC
CGCCCGGGACAGTCCGGCCGCTGCGACGGTTACATCCTTGAGGGCAAGGA
GCTGGAGTTCTACCAGAAGATGCTGGCGAAGAAGAAGTCCAAGTAGTCCG
GCCGCTGCGACGGTTACATCCTTGAGGGCAAGGAGCTGGAGTTCTACCAG
AAGATGCTGGCGAAGAAGAAGTCCAAGTAG
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