mRNA_S-dermatodea_contig9986.17906.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9986.17906.1
Unique NamemRNA_S-dermatodea_contig9986.17906.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9986.17906.1 vs. uniprot
Match: M7SET6_EUTLA (Uncharacterized protein n=1 Tax=Eutypa lata (strain UCR-EL1) TaxID=1287681 RepID=M7SET6_EUTLA)

HSP 1 Score: 149 bits (377), Expect = 7.730e-37
Identity = 112/410 (27.32%), Postives = 184/410 (44.88%), Query Frame = 1 
Query:    1 KGLVCVYRGTIFLYHSAVMSWAQATSPPGGNILTALLGVNAPVNFMIIVQQHAPFLQRWSNTVEVIPRSVCIGAMRLSVSLKEPRGDRTVLFDVISGVITNTVLSGQLSLPANGGDHLPSAFCTRTLFLHAI--------PSRIVVDTEVFIINLALSLFRYDQVDDLLWRLGGALVDPQHGGTLSMIWGHNGGEGKRVFMQFLRKVLPGCFYGMEGRHLSADAPSIPLEEKTKAAQARITLMDELEVSEGFHLNNVKELTSGFTTDIGPSTSITLSTTTFATTNRISWTQRDCVTASMGRRFVIFEVTKNMDDPTAVASEEIATSQKLAFLALCVEA-KLLREHPPTSLHTALRTIFRRSLEGISSCLEFNDKGTGQAQEDALYLIALRSMVPAERILACVEAMNPDLI 1203
            + LVC    T ++Y ++  SW Q  S  G N L    G+NAPVN++  +       +R +  V  +  S+C G  R++  +        V ++V   VI +              D   S     T  +  I        P  + VD    ++N  L+  R DQ  D LWR+G ALVD   GGT+ +++G  G EGK V ++ L  ++P             ++     E     AQ R  + DE E+ +GF  NN+K  TSG    +   T+  LS + F  TN I +  +  +  S+GRR VI+ + + M D       +I     L F+++ V      ++ PPTSL  A+ + FRR++  +++ L ++          A +++A R  V  + +    +AM+P L+
Sbjct:   42 ESLVCFDGNTYYIYCTSAASWLQIYSRTGSNELLKYTGINAPVNYIGPLDWAYRICKRMALRVGKVRPSICFGVTRMAFRVTYMPTKCVVHYEVHKPVIPSK-------------DKTESTRSRLTFVISPIIMPQKALCPVEVEVDFSDELLNRILAPLRNDQKHDFLWRIGRALVDDSEGGTVMVLYGRYGHEGKSVLLKMLTSLIPDASVWCHSDLFGKNSVWPKSEMVNFLAQKRFLICDECEIKDGFSYNNIKRWTSGIPVTLEDGTTCQLSQSAFILTNNIPFHDKAGINNSIGRRLVIYHMDRIMSDFEPPDVSKINNFVVLKFISMAVAVYNSDKKIPPTSLPIAMYSFFRRNINKVTAGLIYDPSSDESECMAATWIMATRCGVDIKTLAVAFKAMSPRLV 438
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BLAST of mRNA_S-dermatodea_contig9986.17906.1 vs. uniprot
Match: A0A4U6WZG8_9PEZI (Uncharacterized protein n=1 Tax=Colletotrichum tanaceti TaxID=1306861 RepID=A0A4U6WZG8_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 3.310e-9
Identity = 61/212 (28.77%), Postives = 95/212 (44.81%), Query Frame = 1 
Query:  277 DVISGVITNTVLSGQLSLPANGGDHLPSAFCTRTLFLHAIPSRIVVDTEVFIINLALSLFRYDQVDDLLWRLGGALVDPQHGGTLSMIWGHNGGEGKRVFMQFLRKVLPGCFYGMEGRHLSADAPSIPLEEKTKAAQARITLMDELEVSEGFHLNNVKELTSGFTTDIGPSTSITLSTTTFATTNRISWTQRDCVTASMGRRFVIFEVTKNM 912
            D +S  +T   LS   + P     HL SA    TL     P  + VD    II+  LS  R DQ  D+LWR+  +LV+PQ GG++ +++G  G EGK    + +  ++P     +        +  +  +      + R  + DE    +GF  NNVK  TSG        T +TL      + + +   +R  +  S+ RR VI+ + K M
Sbjct:    9 DRVSDPVTG--LSSGPTSPIGCRLHLRSAGPRPTL----TPIEVSVDFNDKIISRILSPLRDDQKHDILWRIRRSLVNPQEGGSVIVLYGRYGHEGKSKLAEMITALIPDPSVRVSKDPFRDKSLWLESDAVMNLLEKRFLICDECNNRDGFSYNNVKRWTSG--------TPVTLED---GSPDGLLVAERASINNSISRRLVIYYMDKQM 203
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9986.17906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
M7SET6_EUTLA7.730e-3727.32Uncharacterized protein n=1 Tax=Eutypa lata (strai... [more]
A0A4U6WZG8_9PEZI3.310e-928.77Uncharacterized protein n=1 Tax=Colletotrichum tan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9986contigS-dermatodea_contig9986:4946..6148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score151.0
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog97096.XP_007796131.1
EggNOG OGs2FBW4@1,2TD3Z@2759,3AE1D@33154,3P8QW@4751,3R0QH@4890
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size1203
Cds size1203
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.0113738-CDS-S-dermatodea_contig9986:4945..61481622925442.0113738-CDS-S-dermatodea_contig9986:4945..6148Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9986 4946..6148 +
1694079936.3092954-CDS-S-dermatodea_contig9986:4945..61481694079936.3092954-CDS-S-dermatodea_contig9986:4945..6148Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9986 4946..6148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9986.17906.1prot_S-dermatodea_contig9986.17906.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9986 4946..6148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9986.17906.1

>prot_S-dermatodea_contig9986.17906.1 ID=prot_S-dermatodea_contig9986.17906.1|Name=mRNA_S-dermatodea_contig9986.17906.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=401bp
KGLVCVYRGTIFLYHSAVMSWAQATSPPGGNILTALLGVNAPVNFMIIVQ
QHAPFLQRWSNTVEVIPRSVCIGAMRLSVSLKEPRGDRTVLFDVISGVIT
NTVLSGQLSLPANGGDHLPSAFCTRTLFLHAIPSRIVVDTEVFIINLALS
LFRYDQVDDLLWRLGGALVDPQHGGTLSMIWGHNGGEGKRVFMQFLRKVL
PGCFYGMEGRHLSADAPSIPLEEKTKAAQARITLMDELEVSEGFHLNNVK
ELTSGFTTDIGPSTSITLSTTTFATTNRISWTQRDCVTASMGRRFVIFEV
TKNMDDPTAVASEEIATSQKLAFLALCVEAKLLREHPPTSLHTALRTIFR
RSLEGISSCLEFNDKGTGQAQEDALYLIALRSMVPAERILACVEAMNPDL
I
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mRNA from alignment at S-dermatodea_contig9986:4946..6148+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9986.17906.1 ID=mRNA_S-dermatodea_contig9986.17906.1|Name=mRNA_S-dermatodea_contig9986.17906.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1203bp|location=Sequence derived from alignment at S-dermatodea_contig9986:4946..6148+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGACTAGTCTGTGTCTATCGTGGAACGATCTTCCTCTATCACTCAGC
AGTGATGTCCTGGGCACAGGCAACGTCCCCGCCGGGAGGAAACATCCTCA
CCGCTCTCCTCGGGGTAAACGCCCCCGTCAACTTCATGATCATCGTGCAA
CAGCATGCGCCGTTCCTTCAACGCTGGAGCAACACCGTGGAGGTGATCCC
CAGAAGTGTCTGCATCGGAGCCATGCGGTTGAGCGTTTCCCTGAAGGAAC
CCAGGGGAGACAGGACTGTCCTCTTTGACGTCATCTCTGGCGTTATCACT
AACACGGTTCTCTCAGGGCAACTGAGCCTCCCTGCCAATGGTGGTGATCA
TCTCCCTTCAGCGTTCTGCACCAGAACGTTGTTCCTTCACGCGATTCCCT
CCAGGATAGTCGTAGACACTGAGGTGTTCATCATCAACCTCGCTCTCTCG
CTCTTCCGCTACGACCAGGTCGATGACCTCCTCTGGCGATTGGGGGGTGC
GTTGGTCGATCCACAGCACGGAGGCACACTGTCAATGATCTGGGGCCACA
ACGGAGGCGAAGGCAAGAGGGTCTTCATGCAGTTCCTGCGAAAGGTCCTT
CCGGGGTGCTTCTACGGCATGGAAGGACGCCACCTCTCGGCTGATGCACC
AAGCATTCCCCTGGAAGAGAAGACCAAGGCGGCACAGGCACGCATCACGC
TCATGGATGAGCTAGAGGTCAGCGAAGGGTTTCACCTGAACAACGTCAAG
GAACTGACCTCCGGCTTCACCACAGACATTGGCCCTTCGACCTCGATCAC
TTTGTCGACAACGACCTTTGCAACGACAAACAGGATCTCCTGGACGCAAC
GTGACTGTGTCACAGCCAGCATGGGAAGACGATTCGTAATCTTCGAGGTG
ACCAAGAACATGGACGATCCTACGGCTGTTGCCTCTGAGGAGATAGCGAC
TTCCCAGAAACTCGCTTTCCTTGCTCTATGCGTTGAAGCCAAGCTCTTGC
GTGAGCACCCGCCAACGTCCCTGCACACAGCGTTGAGGACGATCTTTCGA
AGGTCGCTGGAAGGGATCTCCTCCTGCCTGGAGTTCAACGACAAGGGAAC
CGGACAGGCGCAGGAAGATGCGTTGTACCTCATTGCTCTGCGATCGATGG
TTCCTGCGGAACGGATCCTTGCCTGTGTTGAAGCGATGAACCCTGACCTG
ATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9986:4946..6148+

>mRNA_S-dermatodea_contig9986.17906.1 ID=mRNA_S-dermatodea_contig9986.17906.1|Name=mRNA_S-dermatodea_contig9986.17906.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2406bp|location=Sequence derived from alignment at S-dermatodea_contig9986:4946..6148+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGACTAGTCTGTGTCTATCGTGGAACGATCTTCCTCTATCACTCAGC
AGTGATGTCCTGGGCACAGGCAACGTCCCCGCCGGGAGGAAACATCCTCA
CCGCTCTCCTCGGGGTAAACGCCCCCGTCAACTTCATGATCATCGTGCAA
CAGCATGCGCCGTTCCTTCAACGCTGGAGCAACACCGTGGAGGTGATCCC
CAGAAGTGTCTGCATCGGAGCCATGCGGTTGAGCGTTTCCCTGAAGGAAC
CCAGGGGAGACAGGACTGTCCTCTTTGACGTCATCTCTGGCGTTATCACT
AACACGGTTCTCTCAGGGCAACTGAGCCTCCCTGCCAATGGTGGTGATCA
TCTCCCTTCAGCGTTCTGCACCAGAACGTTGTTCCTTCACGCGATTCCCT
CCAGGATAGTCGTAGACACTGAGGTGTTCATCATCAACCTCGCTCTCTCG
CTCTTCCGCTACGACCAGGTCGATGACCTCCTCTGGCGATTGGGGGGTGC
GTTGGTCGATCCACAGCACGGAGGCACACTGTCAATGATCTGGGGCCACA
ACGGAGGCGAAGGCAAGAGGGTCTTCATGCAGTTCCTGCGAAAGGTCCTT
CCGGGGTGCTTCTACGGCATGGAAGGACGCCACCTCTCGGCTGATGCACC
AAGCATTCCCCTGGAAGAGAAGACCAAGGCGGCACAGGCACGCATCACGC
TCATGGATGAGCTAGAGGTCAGCGAAGGGTTTCACCTGAACAACGTCAAG
GAACTGACCTCCGGCTTCACCACAGACATTGGCCCTTCGACCTCGATCAC
TTTGTCGACAACGACCTTTGCAACGACAAACAGGATCTCCTGGACGCAAC
GTGACTGTGTCACAGCCAGCATGGGAAGACGATTCGTAATCTTCGAGGTG
ACCAAGAACATGGACGATCCTACGGCTGTTGCCTCTGAGGAGATAGCGAC
TTCCCAGAAACTCGCTTTCCTTGCTCTATGCGTTGAAGCCAAGCTCTTGC
GTGAGCACCCGCCAACGTCCCTGCACACAGCGTTGAGGACGATCTTTCGA
AGGTCGCTGGAAGGGATCTCCTCCTGCCTGGAGTTCAACGACAAGGGAAC
CGGACAGGCGCAGGAAGATGCGTTGTACCTCATTGCTCTGCGATCGATGG
TTCCTGCGGAACGGATCCTTGCCTGTGTTGAAGCGATGAACCCTGACCTG
ATCAAGGGACTAGTCTGTGTCTATCGTGGAACGATCTTCCTCTATCACTC
AGCAGTGATGTCCTGGGCACAGGCAACGTCCCCGCCGGGAGGAAACATCC
TCACCGCTCTCCTCGGGGTAAACGCCCCCGTCAACTTCATGATCATCGTG
CAACAGCATGCGCCGTTCCTTCAACGCTGGAGCAACACCGTGGAGGTGAT
CCCCAGAAGTGTCTGCATCGGAGCCATGCGGTTGAGCGTTTCCCTGAAGG
AACCCAGGGGAGACAGGACTGTCCTCTTTGACGTCATCTCTGGCGTTATC
ACTAACACGGTTCTCTCAGGGCAACTGAGCCTCCCTGCCAATGGTGGTGA
TCATCTCCCTTCAGCGTTCTGCACCAGAACGTTGTTCCTTCACGCGATTC
CCTCCAGGATAGTCGTAGACACTGAGGTGTTCATCATCAACCTCGCTCTC
TCGCTCTTCCGCTACGACCAGGTCGATGACCTCCTCTGGCGATTGGGGGG
TGCGTTGGTCGATCCACAGCACGGAGGCACACTGTCAATGATCTGGGGCC
ACAACGGAGGCGAAGGCAAGAGGGTCTTCATGCAGTTCCTGCGAAAGGTC
CTTCCGGGGTGCTTCTACGGCATGGAAGGACGCCACCTCTCGGCTGATGC
ACCAAGCATTCCCCTGGAAGAGAAGACCAAGGCGGCACAGGCACGCATCA
CGCTCATGGATGAGCTAGAGGTCAGCGAAGGGTTTCACCTGAACAACGTC
AAGGAACTGACCTCCGGCTTCACCACAGACATTGGCCCTTCGACCTCGAT
CACTTTGTCGACAACGACCTTTGCAACGACAAACAGGATCTCCTGGACGC
AACGTGACTGTGTCACAGCCAGCATGGGAAGACGATTCGTAATCTTCGAG
GTGACCAAGAACATGGACGATCCTACGGCTGTTGCCTCTGAGGAGATAGC
GACTTCCCAGAAACTCGCTTTCCTTGCTCTATGCGTTGAAGCCAAGCTCT
TGCGTGAGCACCCGCCAACGTCCCTGCACACAGCGTTGAGGACGATCTTT
CGAAGGTCGCTGGAAGGGATCTCCTCCTGCCTGGAGTTCAACGACAAGGG
AACCGGACAGGCGCAGGAAGATGCGTTGTACCTCATTGCTCTGCGATCGA
TGGTTCCTGCGGAACGGATCCTTGCCTGTGTTGAAGCGATGAACCCTGAC
CTGATC
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