mRNA_S-dermatodea_contig9986.17904.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9986.17904.1
Unique NamemRNA_S-dermatodea_contig9986.17904.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9986.17904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9986contigS-dermatodea_contig9986:2075..3043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size969
Cds size963
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925441.9237285-UTR-S-dermatodea_contig9986:2074..20801622925441.9237285-UTR-S-dermatodea_contig9986:2074..2080Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9986 2075..2080 +
1694079936.2782493-UTR-S-dermatodea_contig9986:2074..20801694079936.2782493-UTR-S-dermatodea_contig9986:2074..2080Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9986 2075..2080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925441.9393036-CDS-S-dermatodea_contig9986:2080..30431622925441.9393036-CDS-S-dermatodea_contig9986:2080..3043Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9986 2081..3043 +
1694079936.2870321-CDS-S-dermatodea_contig9986:2080..30431694079936.2870321-CDS-S-dermatodea_contig9986:2080..3043Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9986 2081..3043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9986.17904.1prot_S-dermatodea_contig9986.17904.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9986 2081..3043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9986.17904.1

>prot_S-dermatodea_contig9986.17904.1 ID=prot_S-dermatodea_contig9986.17904.1|Name=mRNA_S-dermatodea_contig9986.17904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=321bp
MVEVLDDGRMVFLAKLLVDGNQVQAKDRDNVALSGVVPPMIIRPKHVGVS
SKELMDPTFRPEDYPFEGVMLNVDNLHCRDKAVRTIDLICTSGPDGTLQL
SAIDKRNYVAVAPGWPGMGPSKVYEMTISPEGDEKDKQLVLKNPVPRSDK
VKPYSVEVVRSIANCLLRPSSATVGALLLKLISERVRHHVYAWHASSKEV
IIVGAGRSQEAEELDFNARSYVAIDNVPMRVPFSVRRRCTVCPTKGIAHL
VQSIERAKCHSKRGDLILWQGEFRVLLKEESFMRLLGSSHVTIAFSFSAQ
HFLRVISQSLFDRAHTSGCWF
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mRNA from alignment at S-dermatodea_contig9986:2075..3043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9986.17904.1 ID=mRNA_S-dermatodea_contig9986.17904.1|Name=mRNA_S-dermatodea_contig9986.17904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=969bp|location=Sequence derived from alignment at S-dermatodea_contig9986:2075..3043+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCACATGGTGGAGGTCCTAGACGATGGGAGAATGGTCTTTCTCGCAAA
GCTGCTTGTTGACGGGAACCAAGTTCAAGCAAAGGACAGAGACAACGTGG
CACTCTCAGGAGTGGTTCCCCCGATGATCATACGCCCGAAGCACGTAGGT
GTCTCCTCGAAGGAGCTCATGGACCCCACGTTTAGGCCAGAGGACTATCC
CTTTGAAGGTGTCATGCTCAACGTGGACAACCTTCATTGCCGTGACAAAG
CGGTTCGAACGATCGATCTGATCTGCACGTCTGGTCCGGATGGTACGCTT
CAGCTTTCGGCGATTGACAAACGGAACTACGTAGCGGTTGCACCAGGCTG
GCCGGGGATGGGACCCTCGAAGGTCTACGAGATGACAATCTCCCCTGAAG
GGGACGAGAAGGACAAGCAGCTGGTTCTTAAGAACCCGGTTCCGAGAAGC
GACAAGGTCAAGCCATACAGCGTCGAAGTGGTGCGTTCCATCGCAAACTG
CCTTCTCAGGCCCAGTTCCGCAACCGTTGGTGCTCTTCTGCTGAAGCTGA
TCTCAGAGAGAGTCAGACATCACGTCTATGCTTGGCATGCAAGCAGCAAG
GAGGTCATCATCGTTGGGGCAGGACGTTCCCAGGAAGCCGAAGAGCTCGA
CTTCAACGCAAGAAGCTACGTCGCAATCGACAACGTCCCGATGAGGGTTC
CCTTCTCAGTCCGCCGTAGGTGTACCGTCTGTCCTACGAAGGGGATAGCA
CACCTCGTGCAAAGCATCGAACGGGCCAAATGCCACTCGAAGAGAGGTGA
TCTCATCCTTTGGCAAGGAGAATTTCGCGTACTCCTCAAGGAAGAGTCTT
TCATGAGACTTCTCGGCTCATCGCATGTCACAATCGCTTTCAGCTTCTCT
GCGCAGCACTTCCTCAGGGTGATTTCCCAGTCCCTGTTCGACAGGGCCCA
CACCAGTGGTTGCTGGTTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9986:2075..3043+

>mRNA_S-dermatodea_contig9986.17904.1 ID=mRNA_S-dermatodea_contig9986.17904.1|Name=mRNA_S-dermatodea_contig9986.17904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1926bp|location=Sequence derived from alignment at S-dermatodea_contig9986:2075..3043+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGAGGTCCTAGACGATGGGAGAATGGTCTTTCTCGCAAAGCTGCT
TGTTGACGGGAACCAAGTTCAAGCAAAGGACAGAGACAACGTGGCACTCT
CAGGAGTGGTTCCCCCGATGATCATACGCCCGAAGCACGTAGGTGTCTCC
TCGAAGGAGCTCATGGACCCCACGTTTAGGCCAGAGGACTATCCCTTTGA
AGGTGTCATGCTCAACGTGGACAACCTTCATTGCCGTGACAAAGCGGTTC
GAACGATCGATCTGATCTGCACGTCTGGTCCGGATGGTACGCTTCAGCTT
TCGGCGATTGACAAACGGAACTACGTAGCGGTTGCACCAGGCTGGCCGGG
GATGGGACCCTCGAAGGTCTACGAGATGACAATCTCCCCTGAAGGGGACG
AGAAGGACAAGCAGCTGGTTCTTAAGAACCCGGTTCCGAGAAGCGACAAG
GTCAAGCCATACAGCGTCGAAGTGGTGCGTTCCATCGCAAACTGCCTTCT
CAGGCCCAGTTCCGCAACCGTTGGTGCTCTTCTGCTGAAGCTGATCTCAG
AGAGAGTCAGACATCACGTCTATGCTTGGCATGCAAGCAGCAAGGAGGTC
ATCATCGTTGGGGCAGGACGTTCCCAGGAAGCCGAAGAGCTCGACTTCAA
CGCAAGAAGCTACGTCGCAATCGACAACGTCCCGATGAGGGTTCCCTTCT
CAGTCCGCCGTAGGTGTACCGTCTGTCCTACGAAGGGGATAGCACACCTC
GTGCAAAGCATCGAACGGGCCAAATGCCACTCGAAGAGAGGTGATCTCAT
CCTTTGGCAAGGAGAATTTCGCGTACTCCTCAAGGAAGAGTCTTTCATGA
GACTTCTCGGCTCATCGCATGTCACAATCGCTTTCAGCTTCTCTGCGCAG
CACTTCCTCAGGGTGATTTCCCAGTCCCTGTTCGACAGGGCCCACACCAG
TGGTTGCTGGTTTATGGTGGAGGTCCTAGACGATGGGAGAATGGTCTTTC
TCGCAAAGCTGCTTGTTGACGGGAACCAAGTTCAAGCAAAGGACAGAGAC
AACGTGGCACTCTCAGGAGTGGTTCCCCCGATGATCATACGCCCGAAGCA
CGTAGGTGTCTCCTCGAAGGAGCTCATGGACCCCACGTTTAGGCCAGAGG
ACTATCCCTTTGAAGGTGTCATGCTCAACGTGGACAACCTTCATTGCCGT
GACAAAGCGGTTCGAACGATCGATCTGATCTGCACGTCTGGTCCGGATGG
TACGCTTCAGCTTTCGGCGATTGACAAACGGAACTACGTAGCGGTTGCAC
CAGGCTGGCCGGGGATGGGACCCTCGAAGGTCTACGAGATGACAATCTCC
CCTGAAGGGGACGAGAAGGACAAGCAGCTGGTTCTTAAGAACCCGGTTCC
GAGAAGCGACAAGGTCAAGCCATACAGCGTCGAAGTGGTGCGTTCCATCG
CAAACTGCCTTCTCAGGCCCAGTTCCGCAACCGTTGGTGCTCTTCTGCTG
AAGCTGATCTCAGAGAGAGTCAGACATCACGTCTATGCTTGGCATGCAAG
CAGCAAGGAGGTCATCATCGTTGGGGCAGGACGTTCCCAGGAAGCCGAAG
AGCTCGACTTCAACGCAAGAAGCTACGTCGCAATCGACAACGTCCCGATG
AGGGTTCCCTTCTCAGTCCGCCGTAGGTGTACCGTCTGTCCTACGAAGGG
GATAGCACACCTCGTGCAAAGCATCGAACGGGCCAAATGCCACTCGAAGA
GAGGTGATCTCATCCTTTGGCAAGGAGAATTTCGCGTACTCCTCAAGGAA
GAGTCTTTCATGAGACTTCTCGGCTCATCGCATGTCACAATCGCTTTCAG
CTTCTCTGCGCAGCACTTCCTCAGGGTGATTTCCCAGTCCCTGTTCGACA
GGGCCCACACCAGTGGTTGCTGGTTT
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