mRNA_S-dermatodea_contig9983.17902.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9983.17902.1
Unique NamemRNA_S-dermatodea_contig9983.17902.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9983.17902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9983contigS-dermatodea_contig9983:7788..8231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925441.7822094-UTR-S-dermatodea_contig9983:7787..78921622925441.7822094-UTR-S-dermatodea_contig9983:7787..7892Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9983 7788..7892 +
1694079936.1634557-UTR-S-dermatodea_contig9983:7787..78921694079936.1634557-UTR-S-dermatodea_contig9983:7787..7892Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9983 7788..7892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925441.7983065-CDS-S-dermatodea_contig9983:7892..82311622925441.7983065-CDS-S-dermatodea_contig9983:7892..8231Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9983 7893..8231 +
1694079936.175049-CDS-S-dermatodea_contig9983:7892..82311694079936.175049-CDS-S-dermatodea_contig9983:7892..8231Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9983 7893..8231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9983.17902.1prot_S-dermatodea_contig9983.17902.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9983 7893..8231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9983.17902.1

>prot_S-dermatodea_contig9983.17902.1 ID=prot_S-dermatodea_contig9983.17902.1|Name=mRNA_S-dermatodea_contig9983.17902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
MWGFLWQLKVHFVADTNDLAGCAWRRVCSRGWGEAVTVWTSRALFLWGFQ
ERAIVPSTVFDTFMQGLLVWCGLIYPRMPCFSVYGFNSHRATPSVRSTAA
STVFAHVFPFVA*
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mRNA from alignment at S-dermatodea_contig9983:7788..8231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9983.17902.1 ID=mRNA_S-dermatodea_contig9983.17902.1|Name=mRNA_S-dermatodea_contig9983.17902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig9983:7788..8231+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTGAGGTAGGGTGGGATGCGGTGGCGGTCGACCGTCGAGACGACGTAC
GGGGCTCGCGTGGTTTCTGCATCCCCTTCCGAAGACATGGCTGAATGATC
CAACAATGTGGGGTTTCTTGTGGCAGCTTAAAGTCCACTTCGTGGCGGAT
ACGAACGACTTGGCAGGGTGTGCGTGGCGTCGTGTGTGCAGCCGAGGATG
GGGAGAGGCAGTGACCGTTTGGACCTCGCGCGCGTTATTTCTGTGGGGAT
TTCAGGAACGTGCCATAGTGCCGTCCACTGTCTTTGACACCTTCATGCAA
GGGCTGCTGGTGTGGTGTGGCCTGATCTACCCACGAATGCCGTGCTTTTC
AGTGTATGGTTTCAACAGCCATAGAGCCACTCCTTCAGTGCGTTCGACAG
CCGCAAGTACGGTGTTCGCTCACGTTTTTCCCTTTGTGGCTTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9983:7788..8231+

>mRNA_S-dermatodea_contig9983.17902.1 ID=mRNA_S-dermatodea_contig9983.17902.1|Name=mRNA_S-dermatodea_contig9983.17902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig9983:7788..8231+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGGGTTTCTTGTGGCAGCTTAAAGTCCACTTCGTGGCGGATACGAA
CGACTTGGCAGGGTGTGCGTGGCGTCGTGTGTGCAGCCGAGGATGGGGAG
AGGCAGTGACCGTTTGGACCTCGCGCGCGTTATTTCTGTGGGGATTTCAG
GAACGTGCCATAGTGCCGTCCACTGTCTTTGACACCTTCATGCAAGGGCT
GCTGGTGTGGTGTGGCCTGATCTACCCACGAATGCCGTGCTTTTCAGTGT
ATGGTTTCAACAGCCATAGAGCCACTCCTTCAGTGCGTTCGACAGCCGCA
AGTACGGTGTTCGCTCACGTTTTTCCCTTTGTGGCTTAGATGTGGGGTTT
CTTGTGGCAGCTTAAAGTCCACTTCGTGGCGGATACGAACGACTTGGCAG
GGTGTGCGTGGCGTCGTGTGTGCAGCCGAGGATGGGGAGAGGCAGTGACC
GTTTGGACCTCGCGCGCGTTATTTCTGTGGGGATTTCAGGAACGTGCCAT
AGTGCCGTCCACTGTCTTTGACACCTTCATGCAAGGGCTGCTGGTGTGGT
GTGGCCTGATCTACCCACGAATGCCGTGCTTTTCAGTGTATGGTTTCAAC
AGCCATAGAGCCACTCCTTCAGTGCGTTCGACAGCCGCAAGTACGGTGTT
CGCTCACGTTTTTCCCTTTGTGGCTTAG
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