mRNA_S-dermatodea_contig9982.17900.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9982.17900.1 vs. uniprot
Match: A0A6H5JVR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR9_9PHAE) HSP 1 Score: 474 bits (1219), Expect = 2.060e-152 Identity = 303/581 (52.15%), Postives = 358/581 (61.62%), Query Frame = 3
Query: 216 DSTRPIGEDIINLVATFASCRDLCTLSFVCRRFRPVASQDDQWELRALDILPSRDQLLSAMAELQLTSFRQLVEALTRIGIPGGALGFWRAEVPAKSWAAQLELSSRLFSSPEGQARAAEEIDMRGELLRISLAARGFLCESIASDGTSRTVFTARISVTAHQKVKVGFFCSEDDSAATMGGD--SWCPGRTIGEAFLDHATVVPSAADRTPIRPAGNNAFFFTR-DGTQTRFTKLQAPPPPFDRMAVAAHSRGDPNYPAAAAAVAVNLCGLWCAPYGSHEMEIVQISVGSDAAAAQEVPGVPARAAK-----------ASGRF-TGSTCSSSKTSR----SESVCTSAPATDSS--------EGGFXXXXXXXXXXXXXXVERKTSS----IEPKAATKATTTASAAPRNDAQSAAVFGVEAAELGDDEDQIMSGGADTDQAGYAGLLPLSLFGVKVTGDANVPAGKTSFAIDLDKDFDIGEELEADRRPVILFLPTGAVMANLANRRGNIAFWRKGRGQINRVPGRWAPEWVDVDFVAYQPGSRCAFSVVFRQPAQAVRVIMDFERVLGAKEEWPQWPA 1865
D TR + +D IN+VA+FASC DLC L+ VCRRF P+ DD WELRALDILPS Q+ SAM++L+LTSFRQLVEA T IGIPGG LGFW+AE P +W Q + L + Q A RGELLRI+L A GFLCESIA GT R +FT R+S T ++K+GFFC E +SA T+GGD SW PG ++ EA + +P + RTPIR +G AFF R DG R+ KL APP A S G AAA NLCGLWCAPYGSH +EI+Q+S + +E +AA A GR + S S TSR SESVCTS PATD+ E G XXXXXXXXXXXXXX +S IE + +D A++ + L + GA A +P LFG KVTGD NVPAGKTSF IDL DFD+ EEL +D RPV+ FLPTGAVMANLANRR I+ WRKGRGQINRVPGRW+PEWVDV+FV Y+ GSRCAFSV+FRQP QAVRV+MDFER LG +EEWPQW A
Sbjct: 55 DKTRLLDDDTINVVASFASCHDLCVLAEVCRRFSPLPFCDDLWELRALDILPSVPQVHSAMSQLKLTSFRQLVEAFTLIGIPGGVLGFWQAEAPTLAWDVQQQQQGGLDGTTVQQPEA------RGELLRITLEAGGFLCESIAPSGTRRRIFTIRVSKTPTGRIKIGFFCLEKESALTIGGDNDSWVPGDSMAEALARYTFAIPGSTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPP---------ASSPGG-----AAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPNEETAAAAVKAATVVKLSSLSQSWAGGRGGRRGSVSGSSTSRVTDGSESVCTSTPATDADGSEADSCDEAGGXXXXXXXXXXXXXXXXXXSSDGHGDIE-------------SVLDDGCLASIARRKGNSLHHADTATAGSGAGAGDAS----VPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSA 598
BLAST of mRNA_S-dermatodea_contig9982.17900.1 vs. uniprot
Match: D7FWS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS5_ECTSI) HSP 1 Score: 400 bits (1029), Expect = 1.200e-125 Identity = 252/518 (48.65%), Postives = 301/518 (58.11%), Query Frame = 3
Query: 396 MAELQLTSFRQLVEALTRIGIPGGALGFWRAEVPAKSWAAQLELSSRLFSSPEGQARAAEEIDMRGELLRISLAARGFLCESIASDGTSRTVFTARISVTAHQKVKVGFFCSEDDSAATMGGD--SWCPGRTIGEAFLDHATVVPSAADRTPIRPAGNNAFFFTR-DGTQTRFTKLQAPPPPFDRMAVAAHSRGDPNYPAAAAAVAVNLCGLWCAPYGSHEMEIVQISVGSDAAAAQEVPGVP-------ARAAKASG------------RFTGSTCSSSK-TSRSESVCTSAPATDS--SEGGFXXXXXXXXXXXXXXVERKTSSIEPKAATKATTTASAAPRNDAQSA---AVFGVEAAELGDDEDQIMSGGADTDQAGYAGLLPLSLFGVKVTGDANVPAGKTSFAIDLDKDFDIGEELEADRRPVILFLPTGAVMANLANRRGNIAFWRKGRGQINRVPGRWAPEWVDVDFVAYQPGSRCAFSVVFRQPAQAVRVIMDFERVLGAKEEWPQWPA 1865
MA+L+LTSFRQLVEA T IGIPGG LGFW+AE P SW Q + L + +E + RGELLRI+L A GFLCESIA +GT R +FT R+S T ++ +GFFC E +S+ T+GGD SW PG ++ EA + VP + RTP+R +G AFF R DG R+ KL APP P AAA AV NLCGLWCAPYGSH +EI+Q+S + +E A AK S R + S CS+S+ T SESVCTS PATD+ SE G XXXXX + D +S A G+ +G A + +P LFG KVTGD NVPAGKTSF IDL DFD+ EEL +D RPV+ FLPTGAVMANLANRR I+ WR GRGQINRVPGRW+PEWVDV+FV Y+ GSRCAFSV+FRQP QAVRV+MDFER LG +EEWPQW A
Sbjct: 1 MAQLKLTSFRQLVEAFTLIGIPGGVLGFWQAEAPTLSWDVQQQQQGGLDGA------TVQEREARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTPTDRINIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAVPGSTKRTPMRASGTKAFFLERNDGRTCRYVKLTAPP------------ASSPGVVAAAGAVK-NLCGLWCAPYGSHGLEIIQLSTDPSCSPDEETAAAXXXXXXKAATVAKLSSLSQSWAGGRGGPRGSVSGCSTSRMTDGSESVCTSTPATDADGSEAGSCDEAGGSSEXXXXXXXXXXXXXS----------SDGDGDGDVESVLDDVCLASIARRKGNSLHHADTGTAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSA 489
BLAST of mRNA_S-dermatodea_contig9982.17900.1 vs. uniprot
Match: A0A7S2B2Q2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2Q2_9STRA) HSP 1 Score: 118 bits (296), Expect = 4.090e-24 Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 3
Query: 1479 LFGVKVTGDANVPAGKTSFAIDLDKDFDIGEELEADRRPVILFLPTGAVMANLANRRGNIAFWRKGRGQINRVPGRWAPEWVDVDFVAYQPGSRCAFSVVFRQPAQAVRVIMDFERV 1829
L G+KV GDANVPA K SF +D + FD E L D R V+ F P GAV+A+L R+ NI W +G GQINR+ G WAPEWV +DF+ Y S FSV++ + + +R ++DF ++
Sbjct: 405 LEGLKVVGDANVPASKLSFVVDSSQQFDPSERLAMDHRLVVAFPPEGAVIADLMLRKHNITAWYRGMGQINRIQGEWAPEWVGIDFLVYNGSSPTGFSVLWDEQGEVIRHVIDFSKL 521
BLAST of mRNA_S-dermatodea_contig9982.17900.1 vs. uniprot
Match: A0A7S2F4S0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4S0_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.200e-22 Identity = 54/117 (46.15%), Postives = 74/117 (63.25%), Query Frame = 3
Query: 1479 LFGVKVTGDANVPAGKTSFAIDLDKDFDIGEELEADRRPVILFLPTGAVMANLANRRGNIAFWRKGRGQINRVPGRWAPEWVDVDFVAYQPGSRCAFSVVFRQPAQAVRVIMDFERV 1829
L G+KV GDANVP K SF +DL DI L +D R V+ F P G V+ +L R +I W +G GQINR G+WAPEWV +DF+ Y S+ A+S+V+ + + +R ++DF RV
Sbjct: 200 LEGMKVIGDANVPTSKLSFVVDLSDPSDISTRLASDTRQVVSFPPDGFVIMDLNRRERDIVAWYRGAGQINRQKGKWAPEWVGLDFIVYNKNSKAAYSLVWDEDDEELRHMIDFTRV 316
BLAST of mRNA_S-dermatodea_contig9982.17900.1 vs. uniprot
Match: A0A7S2WNK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNK3_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.130e-19 Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 3
Query: 1479 LFGVKVTGDANVPAGKTSFAIDLDKDFDIGEELEADRRPVILFLPTGAVMANLANRRGNIAFWRKGRGQINRVPGRWAPEWVDVDFVAYQPGSRCAFSVVFRQPAQAVRVIMDFERV 1829
L G+KV GDANVPA + SFA+++ + ++ + L D R V+ F P GAV+A+L RR NI W +G GQINR+ G W P+WV +DF+ Y G FSV++ + + +R I+DF R+
Sbjct: 570 LEGLKVVGDANVPASQLSFAVNMTQTYNPTDRLAMDHRLVVAFPPEGAVIADLNIRRDNIVAWYRGLGQINRIQGVWEPDWVGIDFLVYGSGP-VGFSVLWDEQGEVIRHIIDFVRL 685
BLAST of mRNA_S-dermatodea_contig9982.17900.1 vs. uniprot
Match: A0A061QLQ6_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QLQ6_9CHLO) HSP 1 Score: 88.6 bits (218), Expect = 5.400e-16 Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 3
Query: 1458 AGLLPLSLFGVKVTGDANVPAGKTSFAIDLDKDFDIGEELEADRRPVILFLPTGAVMANLANRRGNIAFWRKGRGQINRVPGRWAPEWVDVDFVAYQPGSRCAFSVVFRQPAQAVRVIMDFERVLGAKEEWP--QWPADVSPAASAA 1892
AG+ L L G+K+TGD NVPA K SF L + D E + AD RP+I F TG + NL +R +A G+GQINR P WAPEWVDV + Y G R FS+++ + R I+DF L + + W W + AA +A
Sbjct: 79 AGIGGLRLVGLKLTGDPNVPATKLSFVAALTEPDD-PEGVLADLRPIIAFPSTGPAVVNLQDR--EVAGLFLGKGQINRDPDVWAPEWVDVRLITYS-GQRKGFSILWHDMGEFWRHIIDFAP-LESPDAWAGAAWAVAEAKAARSA 220
BLAST of mRNA_S-dermatodea_contig9982.17900.1 vs. uniprot
Match: W7TAG1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAG1_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 5.580e-5 Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = 3
Query: 1452 GYAGLLP-----LSLFGVKVTGDANVPAGKTSFAIDLDKD-FDIGEELEADRRPVILFLPTGAVMAN--LANRRGNIAFWRKGRGQINRVPGRWAPEWVDVDFVAY---QPGSRCAFSVVFRQPAQAVRVIMDFERVLGAKE 1844
G AG P + L G+K+ GDANVPA + +F D+ D E L AD RP I L T V + LA G I +G+GQ+N VPG W P+ V VD + + G R +++ + R ++ R++ +E
Sbjct: 282 GSAGTSPSIGGRVILEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRP-IYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRLIEGEE 422 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9982.17900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9982.17900.1 >prot_S-dermatodea_contig9982.17900.1 ID=prot_S-dermatodea_contig9982.17900.1|Name=mRNA_S-dermatodea_contig9982.17900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=621bp MLQTPFLTSPTKARTLTASPVLPAAGLPLLSKGIHPISMFSSKHARLSVPback to top mRNA from alignment at S-dermatodea_contig9982:2183..7602+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9982.17900.1 ID=mRNA_S-dermatodea_contig9982.17900.1|Name=mRNA_S-dermatodea_contig9982.17900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5420bp|location=Sequence derived from alignment at S-dermatodea_contig9982:2183..7602+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9982:2183..7602+ >mRNA_S-dermatodea_contig9982.17900.1 ID=mRNA_S-dermatodea_contig9982.17900.1|Name=mRNA_S-dermatodea_contig9982.17900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3726bp|location=Sequence derived from alignment at S-dermatodea_contig9982:2183..7602+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |