mRNA_S-dermatodea_contig996.17884.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig996.17884.1
Unique NamemRNA_S-dermatodea_contig996.17884.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A6H5L2H1_9PHAE (Acylphosphatase-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2H1_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.050e-46
Identity = 70/80 (87.50%), Postives = 78/80 (97.50%), Query Frame = 1
Query:    1 QATGGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEV 240
            Q+TGGYFRAHAR EAHFNRKLCGALKEL +G+TEIIVEGKTSAIRSFLRWCK+GPGLSQ+I++VTVDW+EYTGIFDGFEV
Sbjct:  103 QSTGGYFRAHARNEAHFNRKLCGALKELGQGQTEIIVEGKTSAIRSFLRWCKRGPGLSQQIQEVTVDWAEYTGIFDGFEV 182          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A835YRR3_9STRA (Acylphosphatase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.200e-30
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 QATGGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEV 240
            QA GGYFRAHAR EAH+ R+L GAL+E     TEIIVEGK SAI SF+RWC+KGPGLSQ+I  V V +SE+TGIFDGF V
Sbjct:   70 QAYGGYFRAHARNEAHYMRRLSGALQEYPD-RTEIIVEGKRSAIDSFVRWCRKGPGLSQQISTVEVTFSEHTGIFDGFRV 148          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A7S2XVC5_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.870e-25
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 QATGGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEV 240
            Q  GGYFRA  + EA   R L GAL+EL  G T+++VEG    I SFL+WCK+GPGL+Q ++DV V+W + TGIFD FEV
Sbjct:   74 QVQGGYFRAQCKNEAFRFRGLLGALRELPDGSTKVVVEGPEQKILSFLKWCKRGPGLTQIVDDVQVEWLDSTGIFDTFEV 153          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A6V2T9H1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T9H1_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 6.840e-23
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 QATGGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFE 237
            Q  GG++RA A+ EA F+R+L G +++L  G  EI+VEG    + SF+ WCK+GPGL+Q I  V V+WS  TGIFD FE
Sbjct:  117 QVQGGFYRAMAKKEASFHRRLVGGIRDLRCGSVEIVVEGPRKKLESFIGWCKRGPGLTQAISQVEVEWSPSTGIFDSFE 195          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A3M1D161_9DELT (Acylphosphatase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D161_9DELT)

HSP 1 Score: 73.2 bits (178), Expect = 3.450e-15
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 QATGGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEV 240
            +  G ++RA AR EA     L G +K L  G  E++ EG    +   L WC++GP  + R++DVTV+W EY+G +DGFEV
Sbjct:   14 RVQGVFYRASARDEAR-RLGLSGWVKNLPDGRVELLAEGPRDRLEQLLAWCRQGPPAA-RVDDVTVEWGEYSGSYDGFEV 91          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A661SIQ6_9DELT (Acylphosphatase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661SIQ6_9DELT)

HSP 1 Score: 68.9 bits (167), Expect = 1.610e-13
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 QATGGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEV 240
            +  G  FR   R  A   R + G ++ L  G  E + EGK S ++S L+WC+ GP L+  +  VTVDW +YTG FD FE+
Sbjct:   13 RVQGVCFRMDTR-RAALERNVMGWVRNLPDGRVEALFEGKESDVKSMLKWCESGPVLAS-VRKVTVDWRDYTGKFDSFEI 90          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A842KUY4_9ARCH (Acylphosphatase n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A842KUY4_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 3.020e-11
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   10 GGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEV 240
            G +FRA+ R  A     L G ++ LD G  EI  EG+  A++  + WCK GP  +  +EDV V+W EY+G +  F++
Sbjct:   17 GVFFRAYTRSRARA-LGLKGWVRNLDDGRVEIFAEGEEGALKKLIEWCKVGPPHAI-VEDVKVEWCEYSGKYSSFDI 91          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A497FU72_9CREN (Acylphosphatase n=2 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A497FU72_9CREN)

HSP 1 Score: 63.2 bits (152), Expect = 3.100e-11
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   10 GGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEVR 243
            G +FRA+ R  A     + G +K L  G  E ++EG   A++  ++W  +GP L+ R++ V V+W EY G FD FEVR
Sbjct:   17 GVFFRANMRRVARMYG-VKGWVKNLPDGRVEAVLEGPEDAVKKVIKWAHRGPPLA-RVDKVDVEWEEYRGEFDDFEVR 92          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A419GSI5_9BACT (Acylphosphatase n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A419GSI5_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 2.630e-10
Identity = 28/77 (36.36%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   10 GGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEV 240
            G +FRA  R +A  + +L G ++ L  G+ E + EG  + ++  ++WC  GP    R+++VT +W EY G F+GF+V
Sbjct:   17 GVFFRASTRDKA-LSLELKGWVRNLPNGDVEAVFEGPLNKVKQAVQWCNYGP-RGARVKNVTEEWGEYKGEFNGFDV 91          
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Match: A0A2N6E5I0_9DELT (Acylphosphatase n=1 Tax=Desulfuromonas sp. TaxID=892 RepID=A0A2N6E5I0_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 3.390e-10
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   16 YFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRWCKKGPGLSQRIEDVTVDWSEYTGIFDGFEV 240
            YF     IE      L G ++ L  G+ E + EG+ +A+R  L WC+ GP  + R++++ +DW ++ G F+ FEV
Sbjct:   21 YFTRRTAIE----HDLTGWVRNLPDGDVEAVFEGRETAVRQALDWCRSGPSAA-RVDELFIDWEDFRGEFESFEV 90          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig996.17884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2H1_9PHAE1.050e-4687.50Acylphosphatase-like domain-containing protein n=2... [more]
A0A835YRR3_9STRA2.200e-3070.00Acylphosphatase-like domain-containing protein n=1... [more]
A0A7S2XVC5_9STRA6.870e-2556.25Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A6V2T9H1_HETAK6.840e-2351.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3M1D161_9DELT3.450e-1542.50Acylphosphatase n=1 Tax=Deltaproteobacteria bacter... [more]
A0A661SIQ6_9DELT1.610e-1341.25Acylphosphatase n=2 Tax=Deltaproteobacteria bacter... [more]
A0A842KUY4_9ARCH3.020e-1138.96Acylphosphatase n=1 Tax=Nitrososphaeria archaeon T... [more]
A0A497FU72_9CREN3.100e-1139.74Acylphosphatase n=2 Tax=Thermoprotei archaeon TaxI... [more]
A0A419GSI5_9BACT2.630e-1036.36Acylphosphatase n=1 Tax=Nitrospiraceae bacterium T... [more]
A0A2N6E5I0_9DELT3.390e-1034.67Acylphosphatase n=1 Tax=Desulfuromonas sp. TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig996contigS-dermatodea_contig996:1237..2172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.2e-35
Seed eggNOG ortholog2880.D8LR73
EggNOG free text desc.Acylphosphatase
EggNOG OGs2C3YV@1,2SES2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcylphosphatase-like domain
Ec32 orthologEc-06_004110.1
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925439.9411952-CDS-S-dermatodea_contig996:1236..14021622925439.9411952-CDS-S-dermatodea_contig996:1236..1402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig996 1237..1402 +
1694079934.8413496-CDS-S-dermatodea_contig996:1236..14021694079934.8413496-CDS-S-dermatodea_contig996:1236..1402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig996 1237..1402 +
1622925439.9535685-CDS-S-dermatodea_contig996:2095..21721622925439.9535685-CDS-S-dermatodea_contig996:2095..2172Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig996 2096..2172 +
1694079934.8545992-CDS-S-dermatodea_contig996:2095..21721694079934.8545992-CDS-S-dermatodea_contig996:2095..2172Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig996 2096..2172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig996.17884.1prot_S-dermatodea_contig996.17884.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig996 1237..2172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig996.17884.1

>prot_S-dermatodea_contig996.17884.1 ID=prot_S-dermatodea_contig996.17884.1|Name=mRNA_S-dermatodea_contig996.17884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=81bp
QATGGYFRAHARIEAHFNRKLCGALKELDKGETEIIVEGKTSAIRSFLRW
CKKGPGLSQRIEDVTVDWSEYTGIFDGFEVR
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mRNA from alignment at S-dermatodea_contig996:1237..2172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig996.17884.1 ID=mRNA_S-dermatodea_contig996.17884.1|Name=mRNA_S-dermatodea_contig996.17884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig996:1237..2172+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGACCGGCGGTTACTTCCGAGCGCACGCTAGAATCGAGGCCCACTT TAACCGCAAGCTCTGTGGTGCGCTGAAGGAGCTTGACAAGGGGGAGACGG AGATCATCGTTGAAGGGAAGACCAGCGCTATCCGCAGCTTCTTGCGGTGG TGTAAGAAGGGTCCCGGTAAGCGGCTCTTTGAGGGTCTGTGCGTGGGTTT ACTGCGCCGTGCGGGGGTGTGTTCGCGCGTGGTGCTGCTGCTGTGCTGGG TGTATGCTGCTGCTGCCTCCAGCTTGTACGAGCCTTTGTTCGCTTCTCGA CTCTGCGACTTGATCGTACGTGGGCTAGTTGTTGCCTGTTTTTGGGGGTG TTTCGACTCGGATTGTGGCCGGCTTCGTTCGGGTACTTGTAGTGTTCTGG TGATTTGATGCTTTTGTTTTGGGTGCATTCGAGGAAACAAGAAGCGACGG GCAGCACTGCACGACATGACATTATATGGCGTGGTCTGTGCCTCTGTCCA CTTCACGGGAAACACGCGTTTGGACCGCATATATGTTCCTTTTGCTGTGC CTGTCGTGGCCTGGAACGTTTTTCGCCAGGTTTGGCGAAAGGTTGTCGGG CTGCCTTTCGTTTTGGTCGGATTTTACTTAGCCTTTGCGACATGTACGAT GAGAGAAGCACTGCCACCAAGCCTTGCCCACCAGAAGGCGTGCCAACGCT GGGCTGTGGCGCGTGAGTCCCCCTGAAACACGTGCAAATAAGATCGTTGG GTTCACTTTCGGGCGATCGGTGGAGACGAAGCTCGAGGCTCTTGGGCCCA CAACCGTTACTTTACGTCATTCCTCCCATAAAACGGCTCCTTCTCCGTGG TGTGTGCAGGCCTATCTCAACGGATCGAGGACGTCACGGTGGACTGGTCC GAGTATACGGGAATCTTCGACGGCTTCGAGGTGCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig996:1237..2172+

>mRNA_S-dermatodea_contig996.17884.1 ID=mRNA_S-dermatodea_contig996.17884.1|Name=mRNA_S-dermatodea_contig996.17884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig996:1237..2172+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGACCGGCGGTTACTTCCGAGCGCACGCTAGAATCGAGGCCCACTT
TAACCGCAAGCTCTGTGGTGCGCTGAAGGAGCTTGACAAGGGGGAGACGG
AGATCATCGTTGAAGGGAAGACCAGCGCTATCCGCAGCTTCTTGCGGTGG
TGTAAGAAGGGTCCCGCAGGCGACCGGCGGTTACTTCCGAGCGCACGCTA
GAATCGAGGCCCACTTTAACCGCAAGCTCTGTGGTGCGCTGAAGGAGCTT
GACAAGGGGGAGACGGAGATCATCGTTGAAGGGAAGACCAGCGCTATCCG
CAGCTTCTTGCGGTGGTGTAAGAAGGGTCCCGGCCTATCTCAACGGATCG
AGGACGTCACGGTGGACTGGTCCGAGTATACGGGAATCTTCGACGGCTTC
GAGGTGCGTGCCTATCTCAACGGATCGAGGACGTCACGGTGGACTGGTCC
GAGTATACGGGAATCTTCGACGGCTTCGAGGTGCGT
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