mRNA_S-dermatodea_contig995.17877.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig995.17877.1
Unique NamemRNA_S-dermatodea_contig995.17877.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig995.17877.1 vs. uniprot
Match: D7FNH5_ECTSI (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH5_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 9.940e-6
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 2 
Query:    2 RPKSQSPPSSQASFATALPPAPSTVGAPVSRKKSLPDAPG-------EEDDFFGSFGVK 157
            RP+S SPP SQ S+ ++LP AP++VGAP SRK +             E+DDFFGSFGVK
Sbjct:  424 RPQSTSPPPSQPSYGSSLPKAPASVGAPASRKTATXXXXXXXXXXXXEDDDFFGSFGVK 482
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig995.17877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNH5_ECTSI9.940e-652.54Arf-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig995contigS-dermatodea_contig995:19914..21723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925439.1339536-CDS-S-dermatodea_contig995:19914..202041622925439.1339536-CDS-S-dermatodea_contig995:19914..20204Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 19915..20204 -
1694079934.2939427-CDS-S-dermatodea_contig995:19914..202041694079934.2939427-CDS-S-dermatodea_contig995:19914..20204Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 19915..20204 -
1622925439.1522665-CDS-S-dermatodea_contig995:21662..217231622925439.1522665-CDS-S-dermatodea_contig995:21662..21723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 21663..21723 -
1694079934.303461-CDS-S-dermatodea_contig995:21662..217231694079934.303461-CDS-S-dermatodea_contig995:21662..21723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 21663..21723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig995.17877.1prot_S-dermatodea_contig995.17877.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig995 19915..21723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig995.17877.1

>prot_S-dermatodea_contig995.17877.1 ID=prot_S-dermatodea_contig995.17877.1|Name=mRNA_S-dermatodea_contig995.17877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
PAEEPVAAELAGFVRDCATPGAVYRGRSRVSQEEPSRCPGGRGRLLWELW
SEIKNQPHNKKIVLVRVSVRRGGYLSAAWMNWRARIGGGRAKGGIFRLSC
MSGAAFADIRQCVGTLP
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mRNA from alignment at S-dermatodea_contig995:19914..21723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig995.17877.1 ID=mRNA_S-dermatodea_contig995.17877.1|Name=mRNA_S-dermatodea_contig995.17877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1810bp|location=Sequence derived from alignment at S-dermatodea_contig995:19914..21723- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGCCGAAGAGCCAGTCGCCGCCGAGCTCGCAGGCTTCGTTCGCGACTG
CGCTACCCCCGGTACGAACGGGGGGAAAAGCAAGCCGCATTTGATAAAAA
GGGGTGGTTGGGATCATTTTTCGTGGAAAAAGTTGCCGTCGGAGTGAAAC
GCGCAGACCAGCGGGGCTTCTTCGGGCCACGGTCTCTTCGACAGATGGGG
GGGCGCGCGAGTGGGGGGGGGGGGGGGGGGGGCGACCAAGTTACCGATTT
TTTTTTTCCCTTCCACCCCGGCGATCCCACCACGGGTTCGGTTCCCGCTC
CTCCGGGGGTTACAGTTANNNNNNNNNNGGGCGCGTGTTGGGGGGGGGGG
GGAGTGGTTGGGGGGAGGGGGGGGGGGTGGTACACAAATTGATCGATTAT
TTATCACACTTACAACCGACCGGTCCACCAATGGTTGCCGATCCCGCTCT
CTCGTGGTCAGATGATAAATCGAGGGATGGGAAAAAACAGGAGGGAAAAA
ACGGAGTTGCTTATATCGTACATACAAAGAAGGAATCGACCCAAAGTTAC
TCTCGGAAACAGAGGGGAGCACACCTCGAGACTTGTGCCTGCTTTAGTGT
CTTTATCATGTATGATGTTATATACCCCCCCGCGCTCGCGCCATGTCGTG
GCGGAATGCCCATTGTACGACAAGGAAAGAGACGCGTGTATGACTGTATA
TGACTGAACTGAACAAGGGAGAAGTGAAAGTTGTGACAGATCTATCTGCT
TTTGAAGCATGGGACAGTCAGACGAAGACAGTACTGTAGCAATACTGGGG
GGATATGAAATGAGCGGCCCGAAAAGGCGAGAATTGAAGTAGACAGACTA
AAGAAAAAAACGTTTTGAGGCACCTTTGGCAAAAGTAGGAAGGAAGCGAT
TGGCCATCGGCAATCGATCGATCGTGTGGGAACAATAACAATGCTCCGTC
CTCCCTCCCGAGGACGGACGCGTGGTCAGTGGCCTAACAGCTAAGGCATG
CAAAACCTTACTGAGCACGCCCCCCCCCCCCCCCCCCCCCCCACCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCACCCCCCCCCCCAACACC
CCCAAACAACCACCACACCCCACAAAAAACAAAAAACGACACAAACAACA
CANNNNNNNNNNAAAATCCCCCCCCCCCCCCCCCGGGGGCGGCCGGGGGG
GCGGTGGCCAAAAAGCCAAGGAATGAAAAACCTTATCGACCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGCCCCCTGCCCGCATTCGGTTCCGTCCAT
AAACCTCGGGACATCGCGTTCCGGCGCGCGCTTCCAAATACATTTCACAA
CTTAAGACGAGCCAGGCGACCTTCTTGAAAACTCGCGTCTCAACTCTCAC
TTTTTTTTTCTCGCCTTTCTATTTTCCCGCCACCCTTACCCTTTCCGTGC
ATGTTGTGTATCTCGGGGCGCCGCACACGCTGCGTCGTCGTTCGTTCGCC
CTCCCCTATCGTATTCCAGGCGCCGTCTACCGTGGGCGCTCCCGTGTCTC
GCAAGAAGAGCCTTCCCGATGCCCCGGGGGAAGAGGACGACTTCTTTGGG
AGCTTTGGAGTGAAATAAAAAACCAACCACACAACAAAAAAATCGTTTTG
GTTCGTGTGTCGGTCAGGCGCGGTGGGTATTTGTCTGCCGCGTGGATGAA
TTGGCGCGCGCGCATCGGGGGTGGGCGAGCTAAGGGGGGGATTTTTCGTT
TATCATGCATGAGCGGGGCGGCATTCGCCGACATACGTCAATGCGTGGGC
ACGCTCCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig995:19914..21723-

>mRNA_S-dermatodea_contig995.17877.1 ID=mRNA_S-dermatodea_contig995.17877.1|Name=mRNA_S-dermatodea_contig995.17877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig995:19914..21723- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGCCGAAGAGCCAGTCGCCGCCGAGCTCGCAGGCTTCGTTCGCGACTG
CGCTACCCCCGCCGGCCGAAGAGCCAGTCGCCGCCGAGCTCGCAGGCTTC
GTTCGCGACTGCGCTACCCCCGGCGCCGTCTACCGTGGGCGCTCCCGTGT
CTCGCAAGAAGAGCCTTCCCGATGCCCCGGGGGAAGAGGACGACTTCTTT
GGGAGCTTTGGAGTGAAATAAAAAACCAACCACACAACAAAAAAATCGTT
TTGGTTCGTGTGTCGGTCAGGCGCGGTGGGTATTTGTCTGCCGCGTGGAT
GAATTGGCGCGCGCGCATCGGGGGTGGGCGAGCTAAGGGGGGGATTTTTC
GTTTATCATGCATGAGCGGGGCGGCATTCGCCGACATACGTCAATGCGTG
GGCACGCTCCCCGCGCCGTCTACCGTGGGCGCTCCCGTGTCTCGCAAGAA
GAGCCTTCCCGATGCCCCGGGGGAAGAGGACGACTTCTTTGGGAGCTTTG
GAGTGAAATAAAAAACCAACCACACAACAAAAAAATCGTTTTGGTTCGTG
TGTCGGTCAGGCGCGGTGGGTATTTGTCTGCCGCGTGGATGAATTGGCGC
GCGCGCATCGGGGGTGGGCGAGCTAAGGGGGGGATTTTTCGTTTATCATG
CATGAGCGGGGCGGCATTCGCCGACATACGTCAATGCGTGGGCACGCTCC
CC
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