mRNA_S-dermatodea_contig9940.17871.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9940.17871.1
Unique NamemRNA_S-dermatodea_contig9940.17871.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9940.17871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9940contigS-dermatodea_contig9940:5415..6931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size749
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9940.17871.1prot_S-dermatodea_contig9940.17871.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9940 5415..6384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.8467243-CDS-S-dermatodea_contig9940:5414..56301622925438.8467243-CDS-S-dermatodea_contig9940:5414..5630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 5415..5630 -
1694079934.0910902-CDS-S-dermatodea_contig9940:5414..56301694079934.0910902-CDS-S-dermatodea_contig9940:5414..5630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 5415..5630 -
1622925438.8607576-CDS-S-dermatodea_contig9940:5913..63841622925438.8607576-CDS-S-dermatodea_contig9940:5913..6384Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 5914..6384 -
1694079934.102621-CDS-S-dermatodea_contig9940:5913..63841694079934.102621-CDS-S-dermatodea_contig9940:5913..6384Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 5914..6384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.873436-UTR-S-dermatodea_contig9940:6384..64111622925438.873436-UTR-S-dermatodea_contig9940:6384..6411Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9940 6385..6411 -
1694079934.113282-UTR-S-dermatodea_contig9940:6384..64111694079934.113282-UTR-S-dermatodea_contig9940:6384..6411Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9940 6385..6411 -
1622925438.8869598-UTR-S-dermatodea_contig9940:6896..69311622925438.8869598-UTR-S-dermatodea_contig9940:6896..6931Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9940 6897..6931 -
1694079934.1307285-UTR-S-dermatodea_contig9940:6896..69311694079934.1307285-UTR-S-dermatodea_contig9940:6896..6931Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9940 6897..6931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9940.17871.1

>prot_S-dermatodea_contig9940.17871.1 ID=prot_S-dermatodea_contig9940.17871.1|Name=mRNA_S-dermatodea_contig9940.17871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=229bp
MYLLLHRHGRHAHQSRTRRRGYAHGRRRLAGCLALYAILGAFRGALASGI
PAAAAAAAESSTLAAAAESKPQGRHRSSRPGDEVHDELSALEMVRWLDEV
EVHVMVNVVLVGFVEKGVDGSVGEGFVELDAAPLRRHLDELVRGLSADSN
GGVPIAVVDQGRENALSRLRLHQETLFEVSHALPSLSKQITSAVESAMLT
ATSRGDSVGEQRQGQTGAEGATAAAGVAG
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mRNA from alignment at S-dermatodea_contig9940:5415..6931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9940.17871.1 ID=mRNA_S-dermatodea_contig9940.17871.1|Name=mRNA_S-dermatodea_contig9940.17871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1517bp|location=Sequence derived from alignment at S-dermatodea_contig9940:5415..6931- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCGGTAAGCTAGCCGGCTGCTGGATCGGCAAAGGTGAAGTGCCAGCAC
TCTTCCGGGTTGCTACTAGTCCCAGCTCACTATTATAGCCGTGTTGCTAG
GGTCAGAGGTCCGTATGATGTATCTGCATGGAAACGAAACATGACCGGTT
TTGTAGGTTGCGTACAGATTGGAACTTCACGATTGCGTACAGAACATACA
GGTAGACTACTATAGGTGTCTGTGCTGTAGAACAGAGTACGGTACAGAAA
AGAGAAAGGGATTTCTCTCTTGTACTCACTTGCCTTTGCGTAAGAGCGCC
GTGCATATGCCACGAGAGAGATGTGGTGCCTCATCCCAGCCCGAGACATC
ATGTCCAACAAATGAAATATCGTCTCGGAGCTCCTACTGTATAAAAGCAT
CCACCAGGCATGCAATCACATTTCGCCAACCCCGCCCTCCTCCCCGCGCC
GGTTACTCTGATTTCACACACAACACCGCAACCCACGTTCGCTCCCTTCC
CTATTACTCCCCTCTCACAGCTGCTGCCTGCCGCCAAACGACCCCATATG
TACCTCCTGTTGCATCGCCATGGTCGACACGCCCATCAATCAAGAACACG
TCGCCGCGGCTACGCCCACGGACGCCGCCGACTAGCCGGTTGCCTCGCGC
TCTACGCGATTCTTGGGGCGTTTCGCGGCGCACTGGCATCAGGCATTCCT
GCTGCTGCTGCTGCTGCTGCTGAATCTTCAACCCTCGCCGCCGCCGCGGA
ATCTAAACCGCAGGGGCGGCACCGGTCATCCCGACCTGGCGACGAGGTCC
ATGACGAATTATCTGCCCTTGAGATGGTGCGGTGGCTGGACGAGGTCGAG
GTCCACGTGATGGTGAACGTGGTTCTCGTCGGGTTTGTCGAGAAAGGCGT
TGATGGGAGCGTAGGCGAGGGGTTTGTTGAGCTCGACGCGGCGCCATTGC
GGCGGCACCTGGATGAGCTCGTTCGCGGGCTGTCGGCAGACAGCAACGGT
GGGGTGCCCATCGCGGTGGTGCGTTCTGTGAGCGTTTAGTCCCCCGCTCG
CGCGCTTTGTACGCATACTATAATATATAGTATATATAGTGGGTGTTTCT
CCGGGCATGACAAGCGCGCGTAACAAAGCTGCACCTACCTGCTGTGTCTG
CGATCCTTGTTGCCTCCTCTTCTGACTCCGCTGCGGTCTGCGTACTCGCG
CGTGCTGATATTTTTTCATCGCGAATCTTTGTGTCACCTCCCCTAAGCCT
GCCCGTTTTTGACAACTCGCGCCGCCGATCCGTGTGTTCCTTGGTCGACA
GGTGGACCAAGGCCGCGAGAACGCGCTCTCACGGTTACGACTACACCAGG
AGACTCTCTTCGAGGTTTCTCACGCCCTACCGAGCCTCTCCAAGCAGATC
ACAAGCGCGGTGGAATCGGCGATGCTAACGGCAACCTCGAGGGGCGACAG
CGTCGGAGAACAACGGCAAGGGCAGACCGGTGCGGAAGGTGCGACGGCTG
CGGCGGGAGTTGCGGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9940:5415..6931-

>mRNA_S-dermatodea_contig9940.17871.1 ID=mRNA_S-dermatodea_contig9940.17871.1|Name=mRNA_S-dermatodea_contig9940.17871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at S-dermatodea_contig9940:5415..6931- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTACCTCCTGTTGCATCGCCATGGTCGACACGCCCATCAATCAAGAAC
ACGTCGCCGCGGCTACGCCCACGGACGCCGCCGACTAGCCGGTTGCCTCG
CGCTCTACGCGATTCTTGGGGCGTTTCGCGGCGCACTGGCATCAGGCATT
CCTGCTGCTGCTGCTGCTGCTGCTGAATCTTCAACCCTCGCCGCCGCCGC
GGAATCTAAACCGCAGGGGCGGCACCGGTCATCCCGACCTGGCGACGAGG
TCCATGACGAATTATCTGCCCTTGAGATGGTGCGGTGGCTGGACGAGGTC
GAGGTCCACGTGATGGTGAACGTGGTTCTCGTCGGGTTTGTCGAGAAAGG
CGTTGATGGGAGCGTAGGCGAGGGGTTTGTTGAGCTCGACGCGGCGCCAT
TGCGGCGGCACCTGGATGAGCTCGTTCGCGGGCTGTCGGCAGACAGCAAC
GGTGGGGTGCCCATCGCGGTGATGTACCTCCTGTTGCATCGCCATGGTCG
ACACGCCCATCAATCAAGAACACGTCGCCGCGGCTACGCCCACGGACGCC
GCCGACTAGCCGGTTGCCTCGCGCTCTACGCGATTCTTGGGGCGTTTCGC
GGCGCACTGGCATCAGGCATTCCTGCTGCTGCTGCTGCTGCTGCTGAATC
TTCAACCCTCGCCGCCGCCGCGGAATCTAAACCGCAGGGGCGGCACCGGT
CATCCCGACCTGGCGACGAGGTCCATGACGAATTATCTGCCCTTGAGATG
GTGCGGTGGCTGGACGAGGTCGAGGTCCACGTGATGGTGAACGTGGTTCT
CGTCGGGTTTGTCGAGAAAGGCGTTGATGGGAGCGTAGGCGAGGGGTTTG
TTGAGCTCGACGCGGCGCCATTGCGGCGGCACCTGGATGAGCTCGTTCGC
GGGCTGTCGGCAGACAGCAACGGTGGGGTGCCCATCGCGGTGGTGGACCA
AGGCCGCGAGAACGCGCTCTCACGGTTACGACTACACCAGGAGACTCTCT
TCGAGGTTTCTCACGCCCTACCGAGCCTCTCCAAGCAGATCACAAGCGCG
GTGGAATCGGCGATGCTAACGGCAACCTCGAGGGGCGACAGCGTCGGAGA
ACAACGGCAAGGGCAGACCGGTGCGGAAGGTGCGACGGCTGCGGCGGGAG
TTGCGGGAGTGGACCAAGGCCGCGAGAACGCGCTCTCACGGTTACGACTA
CACCAGGAGACTCTCTTCGAGGTTTCTCACGCCCTACCGAGCCTCTCCAA
GCAGATCACAAGCGCGGTGGAATCGGCGATGCTAACGGCAACCTCGAGGG
GCGACAGCGTCGGAGAACAACGGCAAGGGCAGACCGGTGCGGAAGGTGCG
ACGGCTGCGGCGGGAGTTGCGGGA
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