mRNA_S-dermatodea_contig994.17869.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig994.17869.1
Unique NamemRNA_S-dermatodea_contig994.17869.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: D8LEB1_ECTSI (Utp13 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB1_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.970e-19
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHP 126
            TGTLVATGSSDST KVWDVERGYCTHNFRGH G+VSVVAFHP
Sbjct:  125 TGTLVATGSSDSTAKVWDVERGYCTHNFRGHTGVVSVVAFHP 166
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: A0A1S8VFC2_9FUNG (Uncharacterized protein (Fragment) n=2 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VFC2_9FUNG)

HSP 1 Score: 82.0 bits (201), Expect = 4.400e-17
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHP 126
            T TLVATGS+DSTVKVWDV+RGYCTHNF+GH GIVSVV FHP
Sbjct:  110 TSTLVATGSADSTVKVWDVDRGYCTHNFKGHGGIVSVVKFHP 151
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: F4PD37_BATDJ (Utp13 domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4PD37_BATDJ)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-16
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHP 126
            T TLV+TGS+DSTVKVWDV+RGYCTHNF+GH GIVSVV FHP
Sbjct:  115 TSTLVSTGSADSTVKVWDVDRGYCTHNFKGHGGIVSVVKFHP 156
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: A0A4P9WDJ1_9FUNG (Beta-like 3, isoform CRA_b n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WDJ1_9FUNG)

HSP 1 Score: 77.8 bits (190), Expect = 8.810e-16
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHPVCSGLRCV 150
            T TLVATGS+DST+KVWDV+RG+ THNF+GH GI+SVV FHP    LR V
Sbjct:    6 TSTLVATGSADSTIKVWDVDRGHATHNFKGHSGIISVVRFHPDRRRLRLV 55
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: A0A6J8D3T2_MYTCO (UTP13 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8D3T2_MYTCO)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-15
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHPVCSGLR 144
            T TL+ATGSSDS++K+WD+ER YCTHN RGH+G+VSVV FHP+   L+
Sbjct:  103 TSTLLATGSSDSSIKLWDIERQYCTHNLRGHQGVVSVVEFHPIQEKLQ 150
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: UPI001E1DA8AD (LOW QUALITY PROTEIN: transducin beta-like protein 3 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA8AD)

HSP 1 Score: 77.4 bits (189), Expect = 2.450e-15
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHPVCSGL 141
            T +L+ATGS+DST+K+WDVE+ YCTHN RGH+GI+S+VAFHP  S L
Sbjct:  113 TSSLLATGSADSTIKIWDVEKQYCTHNLRGHQGIISIVAFHPDISRL 159
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: A0A4P9XS41_9FUNG (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XS41_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 3.350e-15
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHP 126
            T TLVATGS+DSTVKVWD++ G+CTHNFRGH G+VS V FHP
Sbjct:  120 TSTLVATGSADSTVKVWDIDGGFCTHNFRGHSGVVSAVRFHP 161
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: A0A1Y3NMT2_PIRSE (Utp13 domain-containing protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NMT2_PIRSE)

HSP 1 Score: 76.3 bits (186), Expect = 4.090e-15
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFH 123
            T TLVATGS+DST+K+WDVE+GYCTHNFRGH G++S + FH
Sbjct:    6 TSTLVATGSADSTIKIWDVEKGYCTHNFRGHSGVISALKFH 46
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: A0A433PNB1_9FUNG (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PNB1_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 4.580e-15
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHP 126
            T TLVATGS+DS VKVWDV++GYCTHNF+GH G+VS V FHP
Sbjct:  114 TSTLVATGSADSMVKVWDVDKGYCTHNFKGHGGVVSAVKFHP 155
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BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Match: A0A4P9ZVM5_9FUNG (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZVM5_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 1.590e-14
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHP 126
            T +LVATGS+DSTVKVWD+E G+CTHNF+GH+G+VS V FHP
Sbjct:  118 TSSLVATGSADSTVKVWDIEGGFCTHNFKGHQGLVSSVKFHP 159
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig994.17869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEB1_ECTSI3.970e-1992.86Utp13 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A1S8VFC2_9FUNG4.400e-1785.71Uncharacterized protein (Fragment) n=2 Tax=Batrach... [more]
F4PD37_BATDJ1.480e-1683.33Utp13 domain-containing protein n=2 Tax=Batrachoch... [more]
A0A4P9WDJ1_9FUNG8.810e-1670.00Beta-like 3, isoform CRA_b n=1 Tax=Blyttiomyces he... [more]
A0A6J8D3T2_MYTCO1.800e-1566.67UTP13 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8D3T2_... [more]
UPI001E1DA8AD2.450e-1568.09LOW QUALITY PROTEIN: transducin beta-like protein ... [more]
A0A4P9XS41_9FUNG3.350e-1576.19Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A1Y3NMT2_PIRSE4.090e-1573.17Utp13 domain-containing protein n=1 Tax=Piromyces ... [more]
A0A433PNB1_9FUNG4.580e-1576.19WD40-repeat-containing domain protein (Fragment) n... [more]
A0A4P9ZVM5_9FUNG1.590e-1473.81Quinon protein alcohol dehydrogenase-like superfam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig994contigS-dermatodea_contig994:23552..23704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue9.3e-16
Seed eggNOG ortholog2880.D8LEB1
Preferred nameTBL3
KEGG koko:K14555
KEGG Pathwayko03008,map03008
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Transducin beta-like protein 3
EggNOG OGsKOG0319@1,KOG0319@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.8161304-CDS-S-dermatodea_contig994:23551..237041622925438.8161304-CDS-S-dermatodea_contig994:23551..23704Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 23552..23704 +
1694079934.0772915-CDS-S-dermatodea_contig994:23551..237041694079934.0772915-CDS-S-dermatodea_contig994:23551..23704Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 23552..23704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig994.17869.1prot_S-dermatodea_contig994.17869.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig994 23552..23704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig994.17869.1

>prot_S-dermatodea_contig994.17869.1 ID=prot_S-dermatodea_contig994.17869.1|Name=mRNA_S-dermatodea_contig994.17869.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=51bp
TGTLVATGSSDSTVKVWDVERGYCTHNFRGHRGIVSVVAFHPVCSGLRCV
*
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mRNA from alignment at S-dermatodea_contig994:23552..23704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig994.17869.1 ID=mRNA_S-dermatodea_contig994.17869.1|Name=mRNA_S-dermatodea_contig994.17869.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at S-dermatodea_contig994:23552..23704+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACTGGCACCTTGGTGGCTACGGGAAGCAGCGACAGCACGGTGAAGGTGTG
GGACGTTGAGCGAGGCTACTGCACCCACAACTTCCGCGGGCACAGGGGGA
TCGTTTCCGTCGTGGCATTTCACCCGGTATGTTCTGGTTTGCGTTGTGTT
TAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig994:23552..23704+

>mRNA_S-dermatodea_contig994.17869.1 ID=mRNA_S-dermatodea_contig994.17869.1|Name=mRNA_S-dermatodea_contig994.17869.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig994:23552..23704+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACTGGCACCTTGGTGGCTACGGGAAGCAGCGACAGCACGGTGAAGGTGTG
GGACGTTGAGCGAGGCTACTGCACCCACAACTTCCGCGGGCACAGGGGGA
TCGTTTCCGTCGTGGCATTTCACCCGGTATGTTCTGGTTTGCGTTGTGTT
TAGACTGGCACCTTGGTGGCTACGGGAAGCAGCGACAGCACGGTGAAGGT
GTGGGACGTTGAGCGAGGCTACTGCACCCACAACTTCCGCGGGCACAGGG
GGATCGTTTCCGTCGTGGCATTTCACCCGGTATGTTCTGGTTTGCGTTGT
GTTTAG
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