mRNA_S-dermatodea_contig994.17867.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig994.17867.1
Unique NamemRNA_S-dermatodea_contig994.17867.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: D8LKV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKV5_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 9.290e-37
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYITAFESIF 267
            GKVLISLELLPK+ ADAQ VG+GRN+PNQNPYLPPP+GRMKFS NPFR++M LLGPK FYK++CCCLC+ +    AVAGNYIT FESIF
Sbjct: 1967 GKVLISLELLPKETADAQPVGAGRNDPNQNPYLPPPAGRMKFSFNPFRLSMSLLGPKAFYKVVCCCLCVILAAFIAVAGNYITTFESIF 2055          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A6H5JGY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY8_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 4.300e-36
Identity = 66/89 (74.16%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYITAFESIF 267
            GKVLISLELLPK+ ADAQ VG+GRN+PNQNPYLPPP+GRMKFS NPFR++M LLGPK FYK++CCC+C+ +    AVAGNYIT FES+F
Sbjct: 2056 GKVLISLELLPKETADAQPVGAGRNDPNQNPYLPPPAGRMKFSFNPFRLSMSLLGPKAFYKVVCCCVCVILAAFIAVAGNYITTFESLF 2144          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A7S2G2Q7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Q7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.890e-19
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYITAFESIF 267
            GK+ I L+LLPK  AD +  G GRN+PN NP LPPP GRMKFS+NPF +  +L GPK   ++ CC +C+ VM         +  F +IF
Sbjct:   20 GKMCIGLKLLPKSIADKEPAGFGRNDPNSNPTLPPPVGRMKFSLNPFVMGAELCGPKLCAQLTCCLVCLGVMALLIFCQPVLNLFIAIF 108          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A6G0WJX2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJX2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.670e-18
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYI 246
            G V IS+EL+P + A  Q+VG GR++PN NP+LPPPSGR+KFS+NPF +   LLGPK   + +CC  C+ VMVA    G +I
Sbjct: 1698 GAVCISMELVPIEKAKIQSVGFGRSDPNNNPFLPPPSGRLKFSMNPFYVFNQLLGPKICRRFMCCLCCVAVMVAMYFLGPFI 1779          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A7S3XX73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX73_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 9.620e-18
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYITAFESI 264
            GKV +S+ + PKD A+AQ VG GR+ PN NPY PPP GR+KFS+NPF +   LLGPK    ++CC      +V FA+   Y + F +I
Sbjct:   66 GKVCLSISIYPKDQANAQPVGFGRSAPNMNPYCPPPVGRLKFSLNPFSMLSQLLGPKITCYVICCLF----LVLFALLSIYCSPFLNI 149          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A485LLW0_9STRA (Aste57867_22404 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLW0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.880e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYI 246
            G V IS+EL+P + A  Q VG GRN+PN  PYLPPP+GR+K S+NPF +  +LLGPK  ++ +CC  C+ +M A    G +I
Sbjct: 1727 GAVCISMELVPIEKAKIQTVGFGRNDPNNGPYLPPPAGRLKLSINPFYVFNELLGPKICHRFMCCLCCLAIMAAMYFVGPFI 1808          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A7S1XSX0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSX0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.860e-17
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYITAFESIF 267
            GKV IS+E++PKD A+  A G GR+EPN NP+LPPP GR++FS NPF +   L GPK  +   CC +CI   +    A    T   S+F
Sbjct:   61 GKVCISVEIVPKDYANMIAAGDGRSEPNANPFLPPPPGRLQFSWNPFVMGSRLCGPKLCFYFTCCLICIVFALLLIFAQPVFTFLISLF 149          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A067CD61_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD61_SAPPC)

HSP 1 Score: 92.4 bits (228), Expect = 6.150e-17
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYI 246
            G + IS+EL+P D A  Q VG GR++PN +P+LPPP+GR+KFS+NPF +  +LLGPK  ++++CC  CI +MV     G  I
Sbjct: 1671 GALCISMELVPIDKAKVQTVGFGRSDPNNSPFLPPPAGRLKFSMNPFYVFNELLGPKICHRVMCCLCCILIMVLMYFLGPII 1752          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A8K1FFZ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFZ5_PYTOL)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYI 246
            G+V +S+EL+P + A  Q VG GR  PN +PYLPPPSGR+ FS+NPF++  DLLGP    +ILCC  C+  MV       +I
Sbjct: 1663 GEVCVSMELVPSEKAKQQHVGQGRQSPNHSPYLPPPSGRLSFSLNPFKVMNDLLGPSICNRILCCLCCVVFMVIIYFLAPFI 1744          
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Match: A0A5D6XHY7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHY7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.030e-16
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 GKVLISLELLPKDAADAQAVGSGRNEPNQNPYLPPPSGRMKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYI 246
            G+V +S+EL+P + A  Q VG+GR+ PN +PYLPPP+GR+ FS+NPF++  DLLGP    +ILCC  C+  MV       +I
Sbjct: 1686 GEVCVSMELVPMEKAKQQPVGNGRSAPNNSPYLPPPAGRLSFSLNPFKVFNDLLGPSICNRILCCLCCVVFMVVIYFLAPFI 1767          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig994.17867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKV5_ECTSI9.290e-3776.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGY8_9PHAE4.300e-3674.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G2Q7_9STRA3.890e-1948.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0WJX2_9STRA5.670e-1853.66Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3XX73_HETAK9.620e-1848.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A485LLW0_9STRA1.880e-1750.00Aste57867_22404 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1XSX0_9STRA4.860e-1747.19Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A067CD61_SAPPC6.150e-1750.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A8K1FFZ5_PYTOL1.120e-1650.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XHY7_9STRA2.030e-1648.78Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig994contigS-dermatodea_contig994:13791..15308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue4.3e-13
Seed eggNOG ortholog2880.D8LKV5
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal anchor
Exons2
Model size963
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig994.17867.1prot_S-dermatodea_contig994.17867.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig994 14484..15191 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.753816-UTR-S-dermatodea_contig994:13790..144831622925438.753816-UTR-S-dermatodea_contig994:13790..14483Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig994 13791..14483 -
1694079934.0156922-UTR-S-dermatodea_contig994:13790..144831694079934.0156922-UTR-S-dermatodea_contig994:13790..14483Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig994 13791..14483 -
1622925438.7865865-UTR-S-dermatodea_contig994:15191..153081622925438.7865865-UTR-S-dermatodea_contig994:15191..15308Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig994 15192..15308 -
1694079934.0639882-UTR-S-dermatodea_contig994:15191..153081694079934.0639882-UTR-S-dermatodea_contig994:15191..15308Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig994 15192..15308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.765668-CDS-S-dermatodea_contig994:14483..145701622925438.765668-CDS-S-dermatodea_contig994:14483..14570Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 14484..14570 -
1694079934.0323296-CDS-S-dermatodea_contig994:14483..145701694079934.0323296-CDS-S-dermatodea_contig994:14483..14570Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 14484..14570 -
1622925438.776971-CDS-S-dermatodea_contig994:15125..151911622925438.776971-CDS-S-dermatodea_contig994:15125..15191Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 15126..15191 -
1694079934.0478666-CDS-S-dermatodea_contig994:15125..151911694079934.0478666-CDS-S-dermatodea_contig994:15125..15191Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 15126..15191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig994.17867.1

>prot_S-dermatodea_contig994.17867.1 ID=prot_S-dermatodea_contig994.17867.1|Name=mRNA_S-dermatodea_contig994.17867.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=51bp
MKFSVNPFRIAMDLLGPKTFYKILCCCLCITVMVAFAVAGNYITAFESIF
*
back to top

mRNA from alignment at S-dermatodea_contig994:13791..15308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig994.17867.1 ID=mRNA_S-dermatodea_contig994.17867.1|Name=mRNA_S-dermatodea_contig994.17867.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1518bp|location=Sequence derived from alignment at S-dermatodea_contig994:13791..15308- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAAAGTGCTGATCTCCTTAGAGCTGCTTCCAAAAGACGCGGCTGACGC GCAGGCAGTGGGATCGGGACGCAACGAGCCAAACCAGAACCCGTACCTAC CGCCGCCCTCCGGGCGAATGAAGTTTTCTGTCAATCCCTTCCGCATCGCC ATGGATCTCCTGGGTCCGAAAACATTTTACAAGGTGCGTTATGGGGGTCC AACTGAGGTGGGGCGCGGGGGCTACAGTCGGGAAGGGAGGAGGAGGAGGA GGTTGCACGTGCTTGAGTTTCGCATGGTTGAGGAGGTTCGCTCTACAGTA GTTATTGTTACGCTCAACCTGTTCAAGTGACCCCTGAGGTGGCGCGGAGA AATGCCGTTTGATTTCCACTCCGTAACCATCGCTCCTAGGTTGTCGAGCA CCTTTTGAAGTGGAGGTTGCCCCATAGAGCATGGCGGAAGAAGTATCAAC TGCATCCAAGAAAAACACTGACTGGAATTCCCTTTCTTTTCGTGTCGGCG AGGACGCCTGAGGAGCCTGAGTCTAGCCCCCGGGTGCTCACCTAGAGGGG GAAAATACTTGTCTATATCGGTAACCAAGAAAACGGGATATTGTTGCGGT GCCATCCGTCGGTGTTGTTCGCCTAGGATGGCGAGCCACTGACTCGTTCC AAAACTATCGACGCTTTAAAAATGCTCCTACCGACGCGGTGCGGTTCCGT GCCCTCTTGATGCCCCTGTGCGATTTTGTTTTTGCCAGATACTCTGTTGC TGCCTGTGCATTACCGTCATGGTTGCCTTCGCTGTGGCAGGAAACTACAT CACTGCGTTCGAAAGTATTTTCTGACTGGCGTCGTCTCGCCGTCGTTCTT CGTTTGGGCCTTGTTTGTTGCTGCTGGCGCAGTATCAGCACGCCGCTGGT ACTTCGGGTCGAGCGGCTGTCGCAATAGTTCTGCCTCTTTGCTTACACTT TAGGGTTGCTTTTACGTTAAATTGAGGAAATCGTCGAAGGAAGCAGCACG CAGGAAGTATTGCAGTCCTAGCATGTGCAGTTTATACGCTACTTGCAGCA AGTGCCGACACATGCGTGAGTCGCAAGATTACGTGAATTCATAGATTTTT GTGGAGTAGACAAACGCGTGGGATCGGTCGTCCTTGTTCGCAGAAAAGGG GTTCGCTTTGTGATGAAGATACCAGGAATAAGTGTATATACATATCTTGC GACAAATATCAGAGTGAGGACGCACACGGTTTGGTCAAGTGTGCCAAACC AACGGGTACACAGTAGTGATAAGAAGTAAATGTAGAGGCTATGGCGCGCA TGCCGAAGCCCGAACCAAGAGGGTGGGTCTGAGAAGTATGATAGAAGTAG GTTAGCAAAGCGTCTTCTGATTGAGTTTGTCATTGCCACCCATATTCAGA GTCTGCGAATTGTCGGAGGAAAAATTAGTATGTACAAGTATGGGTATGGA CTTGGTTACACTGCCGTATATAGTGTGGAGAAAACAAAACTCACGGTGTT GGGGAACGCGATTTTACG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig994:13791..15308-

>mRNA_S-dermatodea_contig994.17867.1 ID=mRNA_S-dermatodea_contig994.17867.1|Name=mRNA_S-dermatodea_contig994.17867.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig994:13791..15308- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTTTTCTGTCAATCCCTTCCGCATCGCCATGGATCTCCTGGGTCC
GAAAACATTTTACAAGATGAAGTTTTCTGTCAATCCCTTCCGCATCGCCA
TGGATCTCCTGGGTCCGAAAACATTTTACAAGATACTCTGTTGCTGCCTG
TGCATTACCGTCATGGTTGCCTTCGCTGTGGCAGGAAACTACATCACTGC
GTTCGAAAGTATTTTCTGAATACTCTGTTGCTGCCTGTGCATTACCGTCA
TGGTTGCCTTCGCTGTGGCAGGAAACTACATCACTGCGTTCGAAAGTATT
TTCTGA
back to top