mRNA_S-dermatodea_contig9934.17861.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9934.17861.1
Unique NamemRNA_S-dermatodea_contig9934.17861.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: D8LPI7_ECTSI (Putative thaumatin, pathogenesis-related protein (PR-5) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI7_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 6.420e-144
Identity = 196/339 (57.82%), Postives = 253/339 (74.63%), Query Frame = 1
Query:    7 QSRTIEVRNHCSFDLDLGFTGGFAGLTVNDECKKHQEND-GTNRCFWSMELQDYLESGQSTTVQLREQESSE--VIWSGAMFALKSPFMDDACPGGKCMPYQGPTGTVTLAEFTMLKEGT-TYFDVSNIHGISIPTSMGPKDAPPNEESDPYREGTAG-ECSWELEPPSDHRKYLVEVKHSHGTCSEDDDCD--QHEVCGASFGHGPPVYGTCGEFFGYLNAHSNCIAGSTGYPFFCETYHDLYACAGTYTQSGYS-NIEGGPGVCGCSDYDDLDIVSAYPCHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFTSVTDTFQVTFCPGDSEEKF 999
            ++RTI ++N CSFDLD+GFTGG+AG      C  +QE D    RCFW++EL D+L++G+  +V + +   +E  V+WSGAM+A++SP  D+ACP G C    G  GTVTL+EFTML   T T++D+S++HG +IPT  GP  +   +  DPYR G AG +CSW  EPP ++RKYL+EVK++HGTC +DD+CD  Q EVCGAS     PVYGTCGE FGYLNAH+NCIAGS GYPF+CE YHDLY C+G Y +SGYS ++ GG  VCGCS YDD+ I S++PC NTNPLW +KAY+WIHYIK+GC + YE+ YSD+TSTFTS  DTF++ FCP DSEE+F
Sbjct:   46 ETRTIVIKNVCSFDLDMGFTGGYAGPAP---CAGNQEEDVDGGRCFWTLELSDFLKAGKEMSVVIEKNNDTENNVVWSGAMYAIQSPHADEACPDG-CSASVGAAGTVTLSEFTMLASPTLTFYDISHVHGANIPTVFGPHSSKGKDAHDPYRNGVAGGDCSWAFEPPEEYRKYLIEVKNAHGTCLQDDECDVAQREVCGASLKGDTPVYGTCGELFGYLNAHTNCIAGSLGYPFYCEVYHDLYGCSGQYCESGYSESVNGGENVCGCSHYDDMGIPSSFPCVNTNPLWVDKAYQWIHYIKRGCTSAYEYAYSDSTSTFTSDQDTFELVFCPRDSEERF 380          
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: Q8QKV0_ESV1K (EsV-1-169 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV0_ESV1K)

HSP 1 Score: 417 bits (1073), Expect = 1.160e-142
Identity = 192/340 (56.47%), Postives = 255/340 (75.00%), Query Frame = 1
Query:    7 QSRTIEVRNHCSFDLDLGFTGGFAGLTVNDECKKHQEND-GTNRCFWSMELQDYLESGQSTTVQLREQESSE--VIWSGAMFALKSPFMDDACPGGKCMPYQGPTGTVTLAEFTMLKEGT-TYFDVSNIHGISIPTSMGPKDAPPNEESDPYREGTAG-ECSWELEPPSDHRKYLVEVKHSHGTCSEDDDCD--QHEVCGASFGHGPPVYGTCGEFFGYLNAHSNCIAGSTGYPFFCETYHDLYACAGTYTQSGYS-NIEGGPGVCGCSDYDDLDIVSAYPCHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFTSVTDTFQVTFCPGDSEEKFF 1002
            ++RTI ++N CSFDLD+GFTGG+AG      C  +QE D    RCFW++ L D+LE+GQ  +V + +   +E  V+WSGAM+A++SP +++ACP  +C    G  GTVTL+EFTML   T T++D+S++HG +IPT+ GP  +   +  DPYR G AG +CSWE EPP ++RKYL+EVK++HGTC +DD+CD  + EVCG S     PVYGTCGE FGY+NAH+NCIAGS GYPF+CE YHDLY C+G Y +SGYS ++ GG  VCGCS YDD+ I S++PC N NPLW +KAY+WIHYIK+GC + YE+ YSD+TSTFTS  DTF++ FCPG+SEE+F+
Sbjct:   56 ETRTIVIKNVCSFDLDMGFTGGYAGSAP---CAGNQEEDVDGGRCFWTLGLADFLEAGQEMSVVIAKNNDTENDVVWSGAMYAIQSPHVEEACPD-ECSASVGAAGTVTLSEFTMLANPTLTFYDISHVHGANIPTAFGPHASTERDAGDPYRNGVAGGDCSWEFEPPEEYRKYLIEVKNAHGTCLQDDECDVDEREVCGVSLKGDTPVYGTCGELFGYMNAHTNCIAGSLGYPFYCEVYHDLYGCSGPYCESGYSESVTGGENVCGCSHYDDMGIPSSFPCINANPLWMDKAYQWIHYIKRGCTSAYEYAYSDSTSTFTSDQDTFELVFCPGNSEERFY 391          
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: B5LW99_9PHYC (Putative thaumatin/PR5-like protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW99_9PHYC)

HSP 1 Score: 248 bits (632), Expect = 2.710e-76
Identity = 137/347 (39.48%), Postives = 202/347 (58.21%), Query Frame = 1
Query:    1 KEQSRTIEVRNHCSFDLDLGFTGGFAGLTVNDE-CKKHQE-NDGTNRCFWSME-LQDYLESGQSTTVQLREQESSEVIWSGAMFALKSPFMDDACPGGKCMPYQGPTGTVTLAEFTMLKEGTTYFDVSNIHGISIPTSMGPKDAPPNEESDPYREGTAG-ECSWELEPPSDHRKYL--VEVKHSHGTCSEDDDCDQH-EVCGASFGHGPPVYGTCGEFFGYLNAHSNCIAGSTGYPFFCETYHDLYACAGTYTQSGYSN---IEGGPGVCGCSDYDDLDIVS--AYPCHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFTSVTDT-FQVTFCPGDSEEKFF 1002
            K+ SR + + N C+FDL LG TGG  G       C  +Q  ++ T+ CFW +E     L SG S    + E ++   ++SG ++ +K    D  C GG+CMP++GP G+VT  EFT +  G  Y+D+S I G+++P +M P D+   +  + Y  G AG +CSW+ +P  D  KYL  V       TC    DC +  +VCG         +G CGE  G+ +AHSNCIAG+TGYPF CE Y D  +C+G Y  SGY+          VCGC D++++ + +    PC +++  WEE++  ++ ++K+GCP+ YEF YSD TSTF+  T + + + FCPGDSEE+FF
Sbjct:   30 KKDSRHLTILNSCTFDLALGVTGGNEGPAKESATCPLNQMFHEETDNCFWHLEGSPKVLLSGASWETDIHEVKNH--LFSGNVWGVKEDQFDSHCRGGECMPWRGPGGSVTKVEFTFIPNGIDYYDISVIEGVNLPVTMSP-DSGDKDLENKYICGVAGGDCSWDFKPDHDLEKYLTLVTANGDGSTCETTVDCPRAGDVCGTY----DKEHGVCGELNGFSSAHSNCIAGATGYPFHCELYGDAISCSGRYHLSGYNAHVYTSSDHRVCGCPDWEEMGVNAPPVSPCRSSDETWEERSLPFLIFLKRGCPSAYEFAYSDMTSTFSCPTSSGYTIEFCPGDSEERFF 369          
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: A0A166FB50_9AGAM (Uncharacterized protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166FB50_9AGAM)

HSP 1 Score: 117 bits (294), Expect = 1.770e-26
Identity = 98/368 (26.63%), Postives = 148/368 (40.22%), Query Frame = 1
Query:    4 EQSRTIEVRNHCSFDLDLGFTGGF-----AGLTVNDECKKHQENDGTNRCFWSMELQD-----YLESGQSTTVQLREQESSEVIWSGAMFALKSPFMDD----ACPGGKCMPYQGPTGTVTLAEFTMLKEGTTYFDVSNIHGISIPTSMGPKDAPPNEES--DPYREGTAGECS---------WELEPPSDHRKYLVEVKHSHGTCSEDDDCDQHEVCGASFGHGPPVYGTCGEFFGYLNA-----------HSNCIAGSTGYPFFCETYHDLYACAGT----YTQSGYSNIEGGPGVCGCSDYDDLDIVSAYP-----CHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFT--SVTDTFQV 966
            + +R +  +N C  D+    T G      AG      C     N+  + C++     +         G +  V      S+  +W+G     +     +     C    C    GP G   +AE  ++K G+ Y+D+SNI G+SIP S+ P + P    +  DPY  G+ G  +         W+   PS   +++     S  TCS D DC   E CG  +  G     TCG   G+              + NC A  T  P+   T    Y C  T    Y  +   N       CGC+++ D+   +  P     C+NT+P W E     + YIK+GCP  Y F Y D +STFT  ++ D + V
Sbjct:   19 QSARQVTFKNSCKKDIWFYPTTGAIGDCSAGCPTGTSC-----NEANSICYYDNPKPNNGNYRIPAGGNNVVVYPFYDNSAAAVWNGNWGFCEDGMTCNQNATTCDSAGCGVASGPYG---IAEVNLIKNGSDYYDLSNIAGVSIPMSITPDNVPSTSTNAADPYTCGSPGSVTPSAGLGASTWDFNVPSVEYQWVTAGNGSAKTCSADTDCSSGEACGLVYDSGKFDM-TCGTLSGFWTGGAVCAVDGGTTYMNCSAALTNGPY-TGTNAAFYGCGDTSGSCYQPAADKNC------CGCANWQDVFNTTLVPSSTIKCNNTSPAWAEIVQPTLQYIKEGCPNCYTFPYDDMSSTFTCKTIVDNYNV 370          
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: A0A6H5K2P7_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2P7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.100e-14
Identity = 53/159 (33.33%), Postives = 71/159 (44.65%), Query Frame = 1
Query:  616 GTCGEFFGYLNAHSNCIAG------STGYPFFCETY------HDLYACAGT-YTQSGYSNIEGGPGV----CGCSDYDDLDIVSAYP----CHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFTSV---------TDTFQVTFCPGDSEEKFF 1002
            G+CGE   ++ A   C  G         +PFFC +         +Y C GT    SGY+     PG     CGC +++D       P    C   NP W E +  W  + K+ CPT Y F Y D TSTFT           T ++ +TFCPGD+E+  F
Sbjct:  444 GSCGEHIAWVTAGGACAGGWEDGTFPDAHPFFCGSEVSGGMRSHMYGCYGTTLAHSGYT-----PGADTTACGCPEWEDPPYNLMAPPISDCTGINPEWVELSMPWHAHQKRACPTAYTFPYDDQTSTFTCFDGDGPGNPNTQSYTITFCPGDTEKNMF 597          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LPI7_ECTSI6.420e-14457.82Putative thaumatin, pathogenesis-related protein (... [more]
Q8QKV0_ESV1K1.160e-14256.47EsV-1-169 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
B5LW99_9PHYC2.710e-7639.48Putative thaumatin/PR5-like protein n=1 Tax=Feldma... [more]
A0A166FB50_9AGAM1.770e-2626.63Uncharacterized protein n=1 Tax=Fibularhizoctonia ... [more]
A0A6H5K2P7_9PHAE5.100e-1433.33WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9934contigS-dermatodea_contig9934:3546..4553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.0
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog1094715.CM001373_gene771
EggNOG free text desc.Thaumatin family
EggNOG OGs1JGQ6@118969,1P3U7@1224,1SJGY@1236,2DX7U@1,343S2@2
COG Functional cat.S
Best tax levelLegionellales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-169 putative thaumatin, pathogenesis-related protein (PR-5)
Ec32 orthologEc-06_005240.1
Exons1
Model size1008
Cds size1008
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.333035-CDS-S-dermatodea_contig9934:3545..45531622925438.333035-CDS-S-dermatodea_contig9934:3545..4553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9934 3546..4553 +
1694079933.7349837-CDS-S-dermatodea_contig9934:3545..45531694079933.7349837-CDS-S-dermatodea_contig9934:3545..4553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9934 3546..4553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9934.17861.1prot_S-dermatodea_contig9934.17861.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9934 3546..4553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9934.17861.1

>prot_S-dermatodea_contig9934.17861.1 ID=prot_S-dermatodea_contig9934.17861.1|Name=mRNA_S-dermatodea_contig9934.17861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=336bp
KEQSRTIEVRNHCSFDLDLGFTGGFAGLTVNDECKKHQENDGTNRCFWSM
ELQDYLESGQSTTVQLREQESSEVIWSGAMFALKSPFMDDACPGGKCMPY
QGPTGTVTLAEFTMLKEGTTYFDVSNIHGISIPTSMGPKDAPPNEESDPY
REGTAGECSWELEPPSDHRKYLVEVKHSHGTCSEDDDCDQHEVCGASFGH
GPPVYGTCGEFFGYLNAHSNCIAGSTGYPFFCETYHDLYACAGTYTQSGY
SNIEGGPGVCGCSDYDDLDIVSAYPCHNTNPLWEEKAYKWIHYIKKGCPT
GYEFQYSDATSTFTSVTDTFQVTFCPGDSEEKFFI*
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mRNA from alignment at S-dermatodea_contig9934:3546..4553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9934.17861.1 ID=mRNA_S-dermatodea_contig9934.17861.1|Name=mRNA_S-dermatodea_contig9934.17861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1008bp|location=Sequence derived from alignment at S-dermatodea_contig9934:3546..4553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAGAACAATCCAGAACTATCGAAGTCAGGAACCACTGTTCTTTCGACCT AGACCTAGGGTTTACGGGAGGGTTCGCCGGCCTCACCGTAAACGACGAGT GCAAGAAACACCAGGAAAATGATGGAACGAATCGGTGTTTCTGGAGCATG GAGCTACAAGACTATCTGGAGAGCGGACAATCCACAACCGTCCAGTTAAG GGAACAGGAAAGTTCAGAAGTTATCTGGAGCGGAGCGATGTTTGCGCTGA AGTCTCCCTTCATGGACGATGCGTGTCCTGGTGGCAAGTGCATGCCCTAC CAAGGACCGACCGGGACCGTAACCCTTGCCGAATTCACCATGCTGAAGGA GGGGACGACGTATTTCGACGTGTCTAACATACACGGGATTTCGATTCCGA CATCCATGGGCCCAAAAGATGCTCCCCCGAACGAGGAGTCGGATCCTTAC CGCGAGGGTACAGCCGGAGAATGTTCATGGGAGTTGGAACCCCCTTCGGA CCACCGCAAGTACCTCGTCGAGGTGAAGCACTCTCACGGGACATGCTCGG AAGACGATGACTGTGACCAGCACGAAGTGTGTGGAGCATCGTTTGGACAC GGACCTCCTGTATACGGTACGTGCGGAGAGTTCTTTGGGTACCTGAACGC TCACTCCAACTGCATTGCCGGATCTACCGGGTACCCGTTCTTCTGTGAGA CGTATCACGACCTGTACGCATGCGCCGGTACTTACACACAGTCGGGATAC AGCAACATCGAGGGAGGACCCGGTGTCTGCGGGTGCAGCGACTACGACGA TCTTGACATCGTCTCGGCGTACCCCTGTCACAACACGAACCCCTTGTGGG AAGAAAAGGCCTATAAGTGGATCCACTACATCAAGAAGGGATGCCCTACT GGGTACGAATTCCAGTACAGTGACGCAACGTCAACCTTCACCTCGGTAAC TGACACTTTCCAAGTGACATTTTGCCCAGGAGACAGCGAGGAGAAGTTCT TCATCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9934:3546..4553+

>mRNA_S-dermatodea_contig9934.17861.1 ID=mRNA_S-dermatodea_contig9934.17861.1|Name=mRNA_S-dermatodea_contig9934.17861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at S-dermatodea_contig9934:3546..4553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAGAACAATCCAGAACTATCGAAGTCAGGAACCACTGTTCTTTCGACCT
AGACCTAGGGTTTACGGGAGGGTTCGCCGGCCTCACCGTAAACGACGAGT
GCAAGAAACACCAGGAAAATGATGGAACGAATCGGTGTTTCTGGAGCATG
GAGCTACAAGACTATCTGGAGAGCGGACAATCCACAACCGTCCAGTTAAG
GGAACAGGAAAGTTCAGAAGTTATCTGGAGCGGAGCGATGTTTGCGCTGA
AGTCTCCCTTCATGGACGATGCGTGTCCTGGTGGCAAGTGCATGCCCTAC
CAAGGACCGACCGGGACCGTAACCCTTGCCGAATTCACCATGCTGAAGGA
GGGGACGACGTATTTCGACGTGTCTAACATACACGGGATTTCGATTCCGA
CATCCATGGGCCCAAAAGATGCTCCCCCGAACGAGGAGTCGGATCCTTAC
CGCGAGGGTACAGCCGGAGAATGTTCATGGGAGTTGGAACCCCCTTCGGA
CCACCGCAAGTACCTCGTCGAGGTGAAGCACTCTCACGGGACATGCTCGG
AAGACGATGACTGTGACCAGCACGAAGTGTGTGGAGCATCGTTTGGACAC
GGACCTCCTGTATACGGTACGTGCGGAGAGTTCTTTGGGTACCTGAACGC
TCACTCCAACTGCATTGCCGGATCTACCGGGTACCCGTTCTTCTGTGAGA
CGTATCACGACCTGTACGCATGCGCCGGTACTTACACACAGTCGGGATAC
AGCAACATCGAGGGAGGACCCGGTGTCTGCGGGTGCAGCGACTACGACGA
TCTTGACATCGTCTCGGCGTACCCCTGTCACAACACGAACCCCTTGTGGG
AAGAAAAGGCCTATAAGTGGATCCACTACATCAAGAAGGGATGCCCTACT
GGGTACGAATTCCAGTACAGTGACGCAACGTCAACCTTCACCTCGGTAAC
TGACACTTTCCAAGTGACATTTTGCCCAGGAGACAGCGAGGAGAAGTTCT
TCATCTAAAAAGAACAATCCAGAACTATCGAAGTCAGGAACCACTGTTCT
TTCGACCTAGACCTAGGGTTTACGGGAGGGTTCGCCGGCCTCACCGTAAA
CGACGAGTGCAAGAAACACCAGGAAAATGATGGAACGAATCGGTGTTTCT
GGAGCATGGAGCTACAAGACTATCTGGAGAGCGGACAATCCACAACCGTC
CAGTTAAGGGAACAGGAAAGTTCAGAAGTTATCTGGAGCGGAGCGATGTT
TGCGCTGAAGTCTCCCTTCATGGACGATGCGTGTCCTGGTGGCAAGTGCA
TGCCCTACCAAGGACCGACCGGGACCGTAACCCTTGCCGAATTCACCATG
CTGAAGGAGGGGACGACGTATTTCGACGTGTCTAACATACACGGGATTTC
GATTCCGACATCCATGGGCCCAAAAGATGCTCCCCCGAACGAGGAGTCGG
ATCCTTACCGCGAGGGTACAGCCGGAGAATGTTCATGGGAGTTGGAACCC
CCTTCGGACCACCGCAAGTACCTCGTCGAGGTGAAGCACTCTCACGGGAC
ATGCTCGGAAGACGATGACTGTGACCAGCACGAAGTGTGTGGAGCATCGT
TTGGACACGGACCTCCTGTATACGGTACGTGCGGAGAGTTCTTTGGGTAC
CTGAACGCTCACTCCAACTGCATTGCCGGATCTACCGGGTACCCGTTCTT
CTGTGAGACGTATCACGACCTGTACGCATGCGCCGGTACTTACACACAGT
CGGGATACAGCAACATCGAGGGAGGACCCGGTGTCTGCGGGTGCAGCGAC
TACGACGATCTTGACATCGTCTCGGCGTACCCCTGTCACAACACGAACCC
CTTGTGGGAAGAAAAGGCCTATAAGTGGATCCACTACATCAAGAAGGGAT
GCCCTACTGGGTACGAATTCCAGTACAGTGACGCAACGTCAACCTTCACC
TCGGTAACTGACACTTTCCAAGTGACATTTTGCCCAGGAGACAGCGAGGA
GAAGTTCTTCATCTAA
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