mRNA_S-dermatodea_contig9934.17861.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: D8LPI7_ECTSI (Putative thaumatin, pathogenesis-related protein (PR-5) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI7_ECTSI) HSP 1 Score: 420 bits (1080), Expect = 6.420e-144 Identity = 196/339 (57.82%), Postives = 253/339 (74.63%), Query Frame = 1
Query: 7 QSRTIEVRNHCSFDLDLGFTGGFAGLTVNDECKKHQEND-GTNRCFWSMELQDYLESGQSTTVQLREQESSE--VIWSGAMFALKSPFMDDACPGGKCMPYQGPTGTVTLAEFTMLKEGT-TYFDVSNIHGISIPTSMGPKDAPPNEESDPYREGTAG-ECSWELEPPSDHRKYLVEVKHSHGTCSEDDDCD--QHEVCGASFGHGPPVYGTCGEFFGYLNAHSNCIAGSTGYPFFCETYHDLYACAGTYTQSGYS-NIEGGPGVCGCSDYDDLDIVSAYPCHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFTSVTDTFQVTFCPGDSEEKF 999
++RTI ++N CSFDLD+GFTGG+AG C +QE D RCFW++EL D+L++G+ +V + + +E V+WSGAM+A++SP D+ACP G C G GTVTL+EFTML T T++D+S++HG +IPT GP + + DPYR G AG +CSW EPP ++RKYL+EVK++HGTC +DD+CD Q EVCGAS PVYGTCGE FGYLNAH+NCIAGS GYPF+CE YHDLY C+G Y +SGYS ++ GG VCGCS YDD+ I S++PC NTNPLW +KAY+WIHYIK+GC + YE+ YSD+TSTFTS DTF++ FCP DSEE+F
Sbjct: 46 ETRTIVIKNVCSFDLDMGFTGGYAGPAP---CAGNQEEDVDGGRCFWTLELSDFLKAGKEMSVVIEKNNDTENNVVWSGAMYAIQSPHADEACPDG-CSASVGAAGTVTLSEFTMLASPTLTFYDISHVHGANIPTVFGPHSSKGKDAHDPYRNGVAGGDCSWAFEPPEEYRKYLIEVKNAHGTCLQDDECDVAQREVCGASLKGDTPVYGTCGELFGYLNAHTNCIAGSLGYPFYCEVYHDLYGCSGQYCESGYSESVNGGENVCGCSHYDDMGIPSSFPCVNTNPLWVDKAYQWIHYIKRGCTSAYEYAYSDSTSTFTSDQDTFELVFCPRDSEERF 380
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: Q8QKV0_ESV1K (EsV-1-169 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV0_ESV1K) HSP 1 Score: 417 bits (1073), Expect = 1.160e-142 Identity = 192/340 (56.47%), Postives = 255/340 (75.00%), Query Frame = 1
Query: 7 QSRTIEVRNHCSFDLDLGFTGGFAGLTVNDECKKHQEND-GTNRCFWSMELQDYLESGQSTTVQLREQESSE--VIWSGAMFALKSPFMDDACPGGKCMPYQGPTGTVTLAEFTMLKEGT-TYFDVSNIHGISIPTSMGPKDAPPNEESDPYREGTAG-ECSWELEPPSDHRKYLVEVKHSHGTCSEDDDCD--QHEVCGASFGHGPPVYGTCGEFFGYLNAHSNCIAGSTGYPFFCETYHDLYACAGTYTQSGYS-NIEGGPGVCGCSDYDDLDIVSAYPCHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFTSVTDTFQVTFCPGDSEEKFF 1002
++RTI ++N CSFDLD+GFTGG+AG C +QE D RCFW++ L D+LE+GQ +V + + +E V+WSGAM+A++SP +++ACP +C G GTVTL+EFTML T T++D+S++HG +IPT+ GP + + DPYR G AG +CSWE EPP ++RKYL+EVK++HGTC +DD+CD + EVCG S PVYGTCGE FGY+NAH+NCIAGS GYPF+CE YHDLY C+G Y +SGYS ++ GG VCGCS YDD+ I S++PC N NPLW +KAY+WIHYIK+GC + YE+ YSD+TSTFTS DTF++ FCPG+SEE+F+
Sbjct: 56 ETRTIVIKNVCSFDLDMGFTGGYAGSAP---CAGNQEEDVDGGRCFWTLGLADFLEAGQEMSVVIAKNNDTENDVVWSGAMYAIQSPHVEEACPD-ECSASVGAAGTVTLSEFTMLANPTLTFYDISHVHGANIPTAFGPHASTERDAGDPYRNGVAGGDCSWEFEPPEEYRKYLIEVKNAHGTCLQDDECDVDEREVCGVSLKGDTPVYGTCGELFGYMNAHTNCIAGSLGYPFYCEVYHDLYGCSGPYCESGYSESVTGGENVCGCSHYDDMGIPSSFPCINANPLWMDKAYQWIHYIKRGCTSAYEYAYSDSTSTFTSDQDTFELVFCPGNSEERFY 391
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: B5LW99_9PHYC (Putative thaumatin/PR5-like protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW99_9PHYC) HSP 1 Score: 248 bits (632), Expect = 2.710e-76 Identity = 137/347 (39.48%), Postives = 202/347 (58.21%), Query Frame = 1
Query: 1 KEQSRTIEVRNHCSFDLDLGFTGGFAGLTVNDE-CKKHQE-NDGTNRCFWSME-LQDYLESGQSTTVQLREQESSEVIWSGAMFALKSPFMDDACPGGKCMPYQGPTGTVTLAEFTMLKEGTTYFDVSNIHGISIPTSMGPKDAPPNEESDPYREGTAG-ECSWELEPPSDHRKYL--VEVKHSHGTCSEDDDCDQH-EVCGASFGHGPPVYGTCGEFFGYLNAHSNCIAGSTGYPFFCETYHDLYACAGTYTQSGYSN---IEGGPGVCGCSDYDDLDIVS--AYPCHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFTSVTDT-FQVTFCPGDSEEKFF 1002
K+ SR + + N C+FDL LG TGG G C +Q ++ T+ CFW +E L SG S + E ++ ++SG ++ +K D C GG+CMP++GP G+VT EFT + G Y+D+S I G+++P +M P D+ + + Y G AG +CSW+ +P D KYL V TC DC + +VCG +G CGE G+ +AHSNCIAG+TGYPF CE Y D +C+G Y SGY+ VCGC D++++ + + PC +++ WEE++ ++ ++K+GCP+ YEF YSD TSTF+ T + + + FCPGDSEE+FF
Sbjct: 30 KKDSRHLTILNSCTFDLALGVTGGNEGPAKESATCPLNQMFHEETDNCFWHLEGSPKVLLSGASWETDIHEVKNH--LFSGNVWGVKEDQFDSHCRGGECMPWRGPGGSVTKVEFTFIPNGIDYYDISVIEGVNLPVTMSP-DSGDKDLENKYICGVAGGDCSWDFKPDHDLEKYLTLVTANGDGSTCETTVDCPRAGDVCGTY----DKEHGVCGELNGFSSAHSNCIAGATGYPFHCELYGDAISCSGRYHLSGYNAHVYTSSDHRVCGCPDWEEMGVNAPPVSPCRSSDETWEERSLPFLIFLKRGCPSAYEFAYSDMTSTFSCPTSSGYTIEFCPGDSEERFF 369
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: A0A166FB50_9AGAM (Uncharacterized protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166FB50_9AGAM) HSP 1 Score: 117 bits (294), Expect = 1.770e-26 Identity = 98/368 (26.63%), Postives = 148/368 (40.22%), Query Frame = 1
Query: 4 EQSRTIEVRNHCSFDLDLGFTGGF-----AGLTVNDECKKHQENDGTNRCFWSMELQD-----YLESGQSTTVQLREQESSEVIWSGAMFALKSPFMDD----ACPGGKCMPYQGPTGTVTLAEFTMLKEGTTYFDVSNIHGISIPTSMGPKDAPPNEES--DPYREGTAGECS---------WELEPPSDHRKYLVEVKHSHGTCSEDDDCDQHEVCGASFGHGPPVYGTCGEFFGYLNA-----------HSNCIAGSTGYPFFCETYHDLYACAGT----YTQSGYSNIEGGPGVCGCSDYDDLDIVSAYP-----CHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFT--SVTDTFQV 966
+ +R + +N C D+ T G AG C N+ + C++ + G + V S+ +W+G + + C C GP G +AE ++K G+ Y+D+SNI G+SIP S+ P + P + DPY G+ G + W+ PS +++ S TCS D DC E CG + G TCG G+ + NC A T P+ T Y C T Y + N CGC+++ D+ + P C+NT+P W E + YIK+GCP Y F Y D +STFT ++ D + V
Sbjct: 19 QSARQVTFKNSCKKDIWFYPTTGAIGDCSAGCPTGTSC-----NEANSICYYDNPKPNNGNYRIPAGGNNVVVYPFYDNSAAAVWNGNWGFCEDGMTCNQNATTCDSAGCGVASGPYG---IAEVNLIKNGSDYYDLSNIAGVSIPMSITPDNVPSTSTNAADPYTCGSPGSVTPSAGLGASTWDFNVPSVEYQWVTAGNGSAKTCSADTDCSSGEACGLVYDSGKFDM-TCGTLSGFWTGGAVCAVDGGTTYMNCSAALTNGPY-TGTNAAFYGCGDTSGSCYQPAADKNC------CGCANWQDVFNTTLVPSSTIKCNNTSPAWAEIVQPTLQYIKEGCPNCYTFPYDDMSSTFTCKTIVDNYNV 370
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Match: A0A6H5K2P7_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2P7_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 5.100e-14 Identity = 53/159 (33.33%), Postives = 71/159 (44.65%), Query Frame = 1
Query: 616 GTCGEFFGYLNAHSNCIAG------STGYPFFCETY------HDLYACAGT-YTQSGYSNIEGGPGV----CGCSDYDDLDIVSAYP----CHNTNPLWEEKAYKWIHYIKKGCPTGYEFQYSDATSTFTSV---------TDTFQVTFCPGDSEEKFF 1002
G+CGE ++ A C G +PFFC + +Y C GT SGY+ PG CGC +++D P C NP W E + W + K+ CPT Y F Y D TSTFT T ++ +TFCPGD+E+ F
Sbjct: 444 GSCGEHIAWVTAGGACAGGWEDGTFPDAHPFFCGSEVSGGMRSHMYGCYGTTLAHSGYT-----PGADTTACGCPEWEDPPYNLMAPPISDCTGINPEWVELSMPWHAHQKRACPTAYTFPYDDQTSTFTCFDGDGPGNPNTQSYTITFCPGDTEKNMF 597 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9934.17861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9934.17861.1 >prot_S-dermatodea_contig9934.17861.1 ID=prot_S-dermatodea_contig9934.17861.1|Name=mRNA_S-dermatodea_contig9934.17861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=336bp KEQSRTIEVRNHCSFDLDLGFTGGFAGLTVNDECKKHQENDGTNRCFWSMback to top mRNA from alignment at S-dermatodea_contig9934:3546..4553+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9934.17861.1 ID=mRNA_S-dermatodea_contig9934.17861.1|Name=mRNA_S-dermatodea_contig9934.17861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1008bp|location=Sequence derived from alignment at S-dermatodea_contig9934:3546..4553+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9934:3546..4553+ >mRNA_S-dermatodea_contig9934.17861.1 ID=mRNA_S-dermatodea_contig9934.17861.1|Name=mRNA_S-dermatodea_contig9934.17861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at S-dermatodea_contig9934:3546..4553+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |