mRNA_S-dermatodea_contig9931.17859.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9931.17859.1
Unique NamemRNA_S-dermatodea_contig9931.17859.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9931.17859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9931contigS-dermatodea_contig9931:5074..5681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size608
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.2859397-CDS-S-dermatodea_contig9931:5073..54811622925438.2859397-CDS-S-dermatodea_contig9931:5073..5481Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9931 5074..5481 +
1694079933.7127347-CDS-S-dermatodea_contig9931:5073..54811694079933.7127347-CDS-S-dermatodea_contig9931:5073..5481Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9931 5074..5481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.297148-UTR-S-dermatodea_contig9931:5481..56811622925438.297148-UTR-S-dermatodea_contig9931:5481..5681Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9931 5482..5681 +
1694079933.7244687-UTR-S-dermatodea_contig9931:5481..56811694079933.7244687-UTR-S-dermatodea_contig9931:5481..5681Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9931 5482..5681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9931.17859.1prot_S-dermatodea_contig9931.17859.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9931 5074..5481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9931.17859.1

>prot_S-dermatodea_contig9931.17859.1 ID=prot_S-dermatodea_contig9931.17859.1|Name=mRNA_S-dermatodea_contig9931.17859.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
AGTGRYAGFSPARRRFTGGGAYTRYRCCIRSETIYLCRQSSRGEHSYNAI
YYCGKQAASTGGTKPTVPRRLDTTPPLATPTSRRGPKEGSDERKAQRRKK
TKSKPENVIAKYYFTKTDNEVGILEKKKNSMGEMW*
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mRNA from alignment at S-dermatodea_contig9931:5074..5681+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9931.17859.1 ID=mRNA_S-dermatodea_contig9931.17859.1|Name=mRNA_S-dermatodea_contig9931.17859.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=608bp|location=Sequence derived from alignment at S-dermatodea_contig9931:5074..5681+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGGACGGGGCGATATGCCGGGTTTTCGCCGGCCAGGCGGCGTTTCAC
AGGAGGGGGGGCATACACTAGGTACCGCTGCTGCATCAGATCAGAGACAA
TATATCTATGTCGCCAATCCTCACGAGGGGAACATAGTTATAATGCCATA
TACTACTGTGGAAAGCAAGCAGCAAGCACAGGAGGCACAAAACCAACTGT
CCCGCGACGCCTCGACACAACACCTCCTTTAGCAACACCAACCAGCAGGC
GAGGGCCAAAAGAGGGAAGCGACGAAAGAAAGGCGCAGCGCAGGAAGAAA
ACGAAATCAAAACCGGAAAACGTGATTGCAAAATATTATTTTACCAAAAC
AGACAACGAAGTGGGGATTTTAGAAAAGAAAAAAAACAGCATGGGGGAAA
TGTGGTAGGAAATAATCTTGCAACGACCGGAATGACCGACCCATTCGTTG
CAGGGACGGCGTATTGGAGCTTATCCATCCGCACAGCCACCACCACGTCG
TAATCGCCAAATTCCCGGGGCAAACACCAAATACACGGCTAAGTTGCCGT
GTCCACACGCCCCTCAAATAAAATAAATTTGATCGCATGATGTCCACCTC
CCCCACCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9931:5074..5681+

>mRNA_S-dermatodea_contig9931.17859.1 ID=mRNA_S-dermatodea_contig9931.17859.1|Name=mRNA_S-dermatodea_contig9931.17859.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig9931:5074..5681+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGGACGGGGCGATATGCCGGGTTTTCGCCGGCCAGGCGGCGTTTCAC
AGGAGGGGGGGCATACACTAGGTACCGCTGCTGCATCAGATCAGAGACAA
TATATCTATGTCGCCAATCCTCACGAGGGGAACATAGTTATAATGCCATA
TACTACTGTGGAAAGCAAGCAGCAAGCACAGGAGGCACAAAACCAACTGT
CCCGCGACGCCTCGACACAACACCTCCTTTAGCAACACCAACCAGCAGGC
GAGGGCCAAAAGAGGGAAGCGACGAAAGAAAGGCGCAGCGCAGGAAGAAA
ACGAAATCAAAACCGGAAAACGTGATTGCAAAATATTATTTTACCAAAAC
AGACAACGAAGTGGGGATTTTAGAAAAGAAAAAAAACAGCATGGGGGAAA
TGTGGTAGGCCGGGACGGGGCGATATGCCGGGTTTTCGCCGGCCAGGCGG
CGTTTCACAGGAGGGGGGGCATACACTAGGTACCGCTGCTGCATCAGATC
AGAGACAATATATCTATGTCGCCAATCCTCACGAGGGGAACATAGTTATA
ATGCCATATACTACTGTGGAAAGCAAGCAGCAAGCACAGGAGGCACAAAA
CCAACTGTCCCGCGACGCCTCGACACAACACCTCCTTTAGCAACACCAAC
CAGCAGGCGAGGGCCAAAAGAGGGAAGCGACGAAAGAAAGGCGCAGCGCA
GGAAGAAAACGAAATCAAAACCGGAAAACGTGATTGCAAAATATTATTTT
ACCAAAACAGACAACGAAGTGGGGATTTTAGAAAAGAAAAAAAACAGCAT
GGGGGAAATGTGGTAG
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