mRNA_S-dermatodea_contig9879.17836.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9879.17836.1
Unique NamemRNA_S-dermatodea_contig9879.17836.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.220e-47
Identity = 78/98 (79.59%), Postives = 89/98 (90.82%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDIIMDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWPHLGNALKYATAMSVSLFGTFQPQ   SW+WVFCFVFATLYQF+WD++MDWDLLR  DG+S+RLRPRLLYR+K +Y  VA++NL LRFLWTVTL+P
Sbjct:  624 RWPHLGNALKYATAMSVSLFGTFQPQMKSSWVWVFCFVFATLYQFSWDVVMDWDLLRW-DGKSLRLRPRLLYRNKTLYTSVAVVNLLLRFLWTVTLVP 720          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.640e-42
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDIIMDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWPHLGNALKYATAMSVSLFGTFQPQ   SW+WVFCFVFATLYQF+WD++MDWDLLRCRDG+S+ L P L+Y +K +Y  VA+ NL   F  TVTL+P
Sbjct:  719 RWPHLGNALKYATAMSVSLFGTFQPQMKSSWVWVFCFVFATLYQFSWDVVMDWDLLRCRDGKSLPLGPPLVYPNKNLYTNVAVGNLLPSFPGTVTLVP 816          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A7S2WTB0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTB0_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.980e-33
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDIIMDWDLLRC--RDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWPHLGNALKYATA +V+L+G F      + +W+F FVFATLYQF WDI MDWDL+R   R GR V  R  LLY+SK  Y+ + +LNL LRF WT+TL+P
Sbjct:   15 RWPHLGNALKYATAQTVALYGLFHADARSNPLWIFGFVFATLYQFAWDIFMDWDLVRISQRMGR-VNFRDNLLYKSKSFYLCIMLLNLGLRFFWTLTLIP 113          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A7S2C320_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C320_9STRA)

HSP 1 Score: 126 bits (317), Expect = 7.970e-32
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDIIMDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWPHLGNA+KYATA +V L+G F      + +W+F FVFATLYQ+TWDI MDWDLLR ++GR    R  LLY++K  Y+ + ++NL LRF W++TL+P
Sbjct:  494 RWPHLGNAMKYATAQTVGLYGLFHANARSNGLWIFGFVFATLYQYTWDIFMDWDLLRFKNGRPA-FRENLLYQNKSFYLAIMVVNLVLRFFWSLTLIP 590          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A7S2SPW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPW5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.990e-31
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDIIMDWDLLRC--RDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWPHLGNALKYATA +V+L+G F      + +W+F FVFATLYQF WDI MDWDL+R   R GR V  R  LLY+SK  Y+ + +LNL LRF WT+TL+P
Sbjct:  463 RWPHLGNALKYATAQTVALYGLFHADARSNPLWIFGFVFATLYQFAWDIFMDWDLVRISQRMGR-VNFRDNLLYKSKSFYLCIMLLNLGLRFFWTLTLIP 561          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A7S3YFX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFX7_HETAK)

HSP 1 Score: 119 bits (299), Expect = 1.220e-30
Identity = 57/98 (58.16%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDIIMDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWPHLGNA+KYA A +V L G F P+      WV  FVFAT YQ+ WDI MDWDLLR  +G S  LR   LY SK  Y+ +A +NL LRFLWT+TL+P
Sbjct:  150 RWPHLGNAMKYAAAQTVGLLGVFHPELRQHPAWVSGFVFATCYQYAWDIFMDWDLLRW-NGSSFELRKNRLYSSKSFYLAIAAVNLVLRFLWTITLIP 246          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A7S2XUU5_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 9.480e-30
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDIIMDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWPHLGNA+KYA+A +V L G F+P    + +W+  FVFAT+YQF WDI MDWDL   RDG + +LR +LL+R K  Y  V  +NL LRFLWT+TL+P
Sbjct:  374 RWPHLGNAMKYASAQTVILCGVFRPSLKTNPMWILAFVFATVYQFLWDIFMDWDLFVWRDG-AFQLRSKLLFRRKSFYYAVTGINLCLRFLWTITLIP 470          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A7S1V254_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V254_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.680e-25
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDIIMDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWP+LGNA KY  A  V++FG + P  H +WIW+ CFV ATLYQ  WD+ MDW+LL      +  LR + LY  KG+Y  + I+N  LRF WT++ LP
Sbjct:  232 RWPYLGNATKYLVAAEVAMFGVWDPTKHTNWIWLSCFVGATLYQVWWDVFMDWELLG-----NTGLRKKRLYPYKGVYWTILIINFVLRFGWTLSFLP 324          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A7S0F4Z2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F4Z2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.940e-19
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQPQ------------NHGSWIWVFCFVFATLYQFTWDIIMDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            RWPHL NA KYA + +V+LFG F P             N     W+F F+ ++LY FTWD+ MDW L R    +   L P L++  +G Y  V  L+L LRF+W +TLLP
Sbjct:  146 RWPHLANAFKYAFSQTVTLFGAFHPLYLEHTRKVEKGLNVFQLTWLFIFISSSLYSFTWDVYMDWGLGR---PKYKYLGPSLMFPKRGYYFMVIALDLVLRFMWVLTLLP 252          
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Match: A0A067CPW5_SAPPC (EXS domain-containing protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CPW5_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 3.450e-15
Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 RWPHLGNALKYATAMSVSLFGTFQP---QNHGSW-IWVFCFVFA----TLYQFTWDIIMDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP 294
            R+PHL NA+KYA A S+ LF  F P   Q    W ++  C++ A    T+YQF WDI MDW L    D +S  LR  LLY     YV + +L+  LRF WT+TL+P
Sbjct:  331 RFPHLPNAMKYACAQSIVLFAVFHPNLKQQDREWTVYQSCYMVAWVGTTMYQFIWDIYMDWGL---GDLKSGFLRQTLLYPKWAYYVAI-VLDFFLRFFWTLTLVP 432          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9879.17836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJQ4_9PHAE1.220e-4779.59EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LHJ2_ECTSI2.640e-4272.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WTB0_9STRA1.980e-3360.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C320_9STRA7.970e-3256.12Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SPW5_9STRA4.990e-3160.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3YFX7_HETAK1.220e-3058.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XUU5_9STRA9.480e-3057.14Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S1V254_9STRA2.680e-2550.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S0F4Z2_9STRA4.940e-1942.73Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A067CPW5_SAPPC3.450e-1545.28EXS domain-containing protein n=2 Tax=Saprolegniac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9879contigS-dermatodea_contig9879:201..1423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue3.1e-36
Seed eggNOG ortholog2880.D8LHJ2
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.40664-CDS-S-dermatodea_contig9879:200..3731622925436.40664-CDS-S-dermatodea_contig9879:200..373Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9879 201..373 +
1694079932.4189255-CDS-S-dermatodea_contig9879:200..3731694079932.4189255-CDS-S-dermatodea_contig9879:200..373Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9879 201..373 +
1622925436.418858-CDS-S-dermatodea_contig9879:1302..14231622925436.418858-CDS-S-dermatodea_contig9879:1302..1423Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9879 1303..1423 +
1694079932.4336312-CDS-S-dermatodea_contig9879:1302..14231694079932.4336312-CDS-S-dermatodea_contig9879:1302..1423Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9879 1303..1423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9879.17836.1prot_S-dermatodea_contig9879.17836.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9879 201..1423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9879.17836.1

>prot_S-dermatodea_contig9879.17836.1 ID=prot_S-dermatodea_contig9879.17836.1|Name=mRNA_S-dermatodea_contig9879.17836.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
RWPHLGNALKYATAMSVSLFGTFQPQNHGSWIWVFCFVFATLYQFTWDII
MDWDLLRCRDGRSVRLRPRLLYRSKGMYVGVAILNLALRFLWTVTLLP
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mRNA from alignment at S-dermatodea_contig9879:201..1423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9879.17836.1 ID=mRNA_S-dermatodea_contig9879.17836.1|Name=mRNA_S-dermatodea_contig9879.17836.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1223bp|location=Sequence derived from alignment at S-dermatodea_contig9879:201..1423+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTGGCCGCACTTGGGTAACGCCCTCAAGTATGCGACAGCAATGTCGGT GTCCCTGTTCGGCACGTTCCAGCCGCAGAATCACGGCAGCTGGATATGGG TGTTCTGCTTCGTGTTTGCGACCCTGTACCAGTTCACCTGGGACATCATC ATGGATTGGGACCTGTTGCGATGGTAAGGGCTGAGCGAGCGCGCGTTGCT CGTGCGATCCGCGGTCGTACACATCTCCAGGAACTTTTCCGGGCTTGTAC CCTCCGGTTTGCCGCTTAGCTTTCAGTTTTCCTTTTGGGGCAGGTGGGTG GTCGGGGTTCACGTTGGCATGTGTTGCTTTTTACCACCCACGTTTTCGTT GCGGCTGTGCCGTGCGTTCTTTCTTTCTTTCTTTCTTTTGCTCTCTCGTG AAACACTAATTTCCGAAGCGCGTGGCGTGTTGGACTTTGGCACTATGTTA GGTGGACGACCGTGCGCGTGCGACTCCCCCGAAGAATTGGAATGTGTTTG CTGTGCGTGTATGCGTAAATGAAACCGTTACCTTTCCGGTGTCCAGCACA GGCGACGCCGAATCGAACATCGGACACGCGGTGAGACCCGTGTTCCTTGT TTTTCAATGCCACCCAGTCACACGAAACGGACTTTATGGGAGTGACTTGA CTTGAACTGGGCTGCGTGTTCAGCTCTCTACGGGGATGGGACTTCGGTGG TTGTAGAACCGGCAGGTGCCGTGCACCTTGCCCCAGCAAAGCGAAAACAT CCAGATCGATCTTCATCAAACCATGCCCCACTGCCGTACCAAACGCGTGC AGCGCGCTCGATCATAAGACACCGCCGTCTTGAAGGCCTATACAATAATT TGACCCACCCAAATTTTCTTCATTTTTAAACACGGCGTGAGCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCA CACACAAAAAACACAACACANNNNNNNNNNTTCCACAACGTCCTTCTTTT CCCCCTCGCTCTTTTCTCTTATTCTACGATCGACGCGCCCCCCCCCCCCC CCCCCCCCCTTCGCCCCCGCCCCCACCCACCCTGAAAACGTGAATATGTG AGCAGGGACGGGAGATCTGTTCGCCTCCGCCCCCGGCTGCTGTACCGCAG CAAGGGTATGTACGTCGGCGTGGCCATCTTGAACCTGGCCCTGAGGTTCC TGTGGACCGTGACGCTCCTTCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9879:201..1423+

>mRNA_S-dermatodea_contig9879.17836.1 ID=mRNA_S-dermatodea_contig9879.17836.1|Name=mRNA_S-dermatodea_contig9879.17836.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig9879:201..1423+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTGGCCGCACTTGGGTAACGCCCTCAAGTATGCGACAGCAATGTCGGT
GTCCCTGTTCGGCACGTTCCAGCCGCAGAATCACGGCAGCTGGATATGGG
TGTTCTGCTTCGTGTTTGCGACCCTGTACCAGTTCACCTGGGACATCATC
ATGGATTGGGACCTGTTGCGATGAGGTGGCCGCACTTGGGTAACGCCCTC
AAGTATGCGACAGCAATGTCGGTGTCCCTGTTCGGCACGTTCCAGCCGCA
GAATCACGGCAGCTGGATATGGGTGTTCTGCTTCGTGTTTGCGACCCTGT
ACCAGTTCACCTGGGACATCATCATGGATTGGGACCTGTTGCGATGCAGG
GACGGGAGATCTGTTCGCCTCCGCCCCCGGCTGCTGTACCGCAGCAAGGG
TATGTACGTCGGCGTGGCCATCTTGAACCTGGCCCTGAGGTTCCTGTGGA
CCGTGACGCTCCTTCCGCAGGGACGGGAGATCTGTTCGCCTCCGCCCCCG
GCTGCTGTACCGCAGCAAGGGTATGTACGTCGGCGTGGCCATCTTGAACC
TGGCCCTGAGGTTCCTGTGGACCGTGACGCTCCTTCCG
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