mRNA_S-dermatodea_contig9874.17835.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9874.17835.1
Unique NamemRNA_S-dermatodea_contig9874.17835.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: D8LIK1_ECTSI (Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIK1_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 3.610e-147
Identity = 199/241 (82.57%), Postives = 221/241 (91.70%), Query Frame = 3 
Query:  102 KHLEGEDIMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIKFSEDYRKVPIVRVGGEFLKDSPIIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANGPFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPWYQRMVTTLES*P 824
            +HLEGEDI VYQYKICPFCNKLK VMD+LGIPYS+TEVNPLTKKEIKFSEDYRKVPIVR+GGE  KDSP+IID L+ARLRE  +MSDEEHAVFCS DA+KWA WADKQLAVLLFPNLTRNFSESYQAFSYVNDV+TFS +DK +NQVIGS AMWAAQGKIKKKYNIDDER+ALFSA+KDWTDAL + +GPF GGD+PNLGDLCV+GCI+AIEGLDTHKDVL+R+GV  WYQ MV+TL+  P
Sbjct:   28 RHLEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKISNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALREVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTLDYAP 268
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BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: A0A835YKS9_9STRA (Prostaglandin E synthase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS9_9STRA)

HSP 1 Score: 321 bits (822), Expect = 1.780e-105
Identity = 164/267 (61.42%), Postives = 197/267 (73.78%), Query Frame = 3 
Query:   27 ARVSFCSAAALQARHGGGETGAWSGKHLEGEDIMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIKFSEDYRKVPIVRVGGEFLKDSPIIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANGPFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSRE-GVAPWYQRMVTTLES*P 824
            A+ S+CS A   A    G+ GA         DIMVYQYKICPFCNKLKAVMD+LGIPY +TEVNPLTKKEIKFS+DY+KVPIVR+  ++L DSP II AL+  L+ +G +S ++   F SPDA  WA WADKQLAVLLFPN+TR+F ESYQAFSYV  V TFS LDKAANQ +GS AMW AQGKIKKKYNI+DER+AL+ AL+ WT  ++     F GG  PNLGDLCV+GC++AIEGLD H + +  E  +A WY RM+  L+  P
Sbjct:   17 AQRSYCSTATRAAAAITGKPGAV----FADADIMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKK--FSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYGP 277
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BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: W7TEG9_9STRA (Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEG9_9STRA)

HSP 1 Score: 288 bits (737), Expect = 5.810e-91
Identity = 139/231 (60.17%), Postives = 172/231 (74.46%), Query Frame = 3 
Query:  108 LEGEDIMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIKFSEDYRKVPIVRVGGEFLKDSPIIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANGPFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPWYQRM 800
            LEG  I +YQYKICPFC K+KAV+D+  +PY   +VNPLTK EIKFS DYRKVPI R+G E ++DSP+I+  +   L    +    +  VF SPDA +WA WADK+LAVLLFPN+TR+F ES+QAFSYVN+V  FSFLDK +NQ +G+TAMWAAQGKIKKKYNI DER ALF AL+ WT   E    PF+GG +PN+GDL VY CI AIEGLD  KD+++   ++ WY R+
Sbjct:  157 LEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWT--REVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRV 385
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BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: A0A7S1XY88_9STRA (Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY88_9STRA)

HSP 1 Score: 264 bits (674), Expect = 9.750e-84
Identity = 127/223 (56.95%), Postives = 164/223 (73.54%), Query Frame = 3 
Query:  120 DIMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIKFSEDYRKVPIVRVGGEFLKDSPIIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANGPFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPW 788
            DI++YQYKICPFCNK+KA++DY G+ Y + EVNPLTK + K   DY+KVP+  +GGE + DSP I+  L A++ E     D + A F S  AE+W  +ADK+LAVLLFPN+TRN++ESYQAFSYVNDV TFS +DK +N  IGSTAMW AQGK+KKKY I+DER ALFSA+  + +AL D    F+GG  PN+GD+ V+G I+AIEG+D   D+ S   + PW
Sbjct:   18 DIVIYQYKICPFCNKIKALLDYYGVDYHVIEVNPLTKAQTKAVTDYKKVPVANIGGEIVTDSPQIVRVLKAKMAEA---DDVDFAGFFSEAAEEWTEFADKKLAVLLFPNITRNWNESYQAFSYVNDVPTFSSMDKMSNLAIGSTAMWLAQGKLKKKYGIEDERDALFSAVTKFEEALGD--NAFLGGANPNMGDIAVFGVIRAIEGMDAFNDLQSETKIGPW 235
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BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: A0A7S0MFA7_9CRYP (Prostaglandin E synthase 2 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFA7_9CRYP)

HSP 1 Score: 265 bits (678), Expect = 2.470e-83
Identity = 129/241 (53.53%), Postives = 169/241 (70.12%), Query Frame = 3 
Query:  108 LEGEDIMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIKFSED---------YRKVPIVRVGGEFLKDSPIIIDALVARLREQGIMSDEEHAV-FCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANGPFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPWYQRM 800
            L+   + +YQY+ICPFCNK+KAV+D+  +PY   EVNPLTK E+ F++D         YRKVP+VR+GG+ + DSP+++D LV  L ++G++   + A  +  P   +W  WADK+LAVLLFPNLTR  SESYQAF YV+ V  FSFLDK +N++ GS AMW AQGKIKKKY I DER AL ++L  WTDA+      F+GG  PNL DLCV+G +++IEGL+TH  VL    V PWY+RM
Sbjct:   53 LQSLKLEMYQYEICPFCNKIKAVLDFHKVPYKTIEVNPLTKSELSFTKDLPEDHPAHKYRKVPLVRIGGDVVADSPVVLDRLVEGLGKEGVIGAAQMARDYKDPKVAEWVRWADKELAVLLFPNLTRTLSESYQAFGYVDSVPHFSFLDKVSNRMAGSLAMWLAQGKIKKKYGITDERAALRASLDRWTDAI--GKSDFLGGASPNLADLCVFGTLRSIEGLETHAIVLRETQVGPWYERM 291
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BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: A0A0M0JG54_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JG54_9EUKA)

HSP 1 Score: 255 bits (651), Expect = 1.420e-79
Identity = 121/229 (52.84%), Postives = 164/229 (71.62%), Query Frame = 3 
Query:  123 IMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIK-FSEDYRKVPIVRVGGEFLKDSPIIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANG--PFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPWYQRM 800
            +++YQY+ICPFCNK+KA++D   +PY  TEVNPLTK EIK +S  YRKVPI ++G E + DS +I  AL+ R+   G++  ++ A F SP A +WA W+D++ AVLLFPN+TR+FSESYQAF YV  V  FS LDK +NQ+IGS  MW AQGKIKKKY IDDER A+ + +  W   L +  G  PF GG +PN  D+CV+GC+KAI+  D +K++++   + PWY R+
Sbjct:   45 VLIYQYEICPFCNKVKALLDLYRVPYETTEVNPLTKGEIKAWSGGYRKVPIAKLGDEQVNDSGVISQALLDRMGTAGVLDAKQLAEFRSPKALEWAKWSDEKFAVLLFPNITRSFSESYQAFGYVMSVPHFSMLDKVSNQIIGSFFMWMAQGKIKKKYGIDDERAAVVAGINHW---LNEGVGSKPFAGGKQPNFADVCVFGCLKAIDRTDAYKEIMAETAIKPWYDRV 270
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BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: A0A7S0HU74_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HU74_9CRYP)

HSP 1 Score: 246 bits (629), Expect = 3.720e-76
Identity = 125/239 (52.30%), Postives = 163/239 (68.20%), Query Frame = 3 
Query:  123 IMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIKFSED---------YRKVPIVRVGGEFLKDSPIIIDALVARLREQGIMSDEEHAVFCS----PDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANGPFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPWYQRM 800
            I +YQY+ICPFCNK+KAV+DY    Y+  EVNPL+KKEI F+ +         YRKVPI  VG + + DS +I++A+V +L E+    +E+  + CS    P  ++W  WAD++LAVLLFPNLTR FSES+QAFSYV  V TFS LDK +N V G+TAMW AQGK+K KY I DER+AL  AL  W DAL+    PF+GG  PNL DLCV+G ++A++G  T + V+    V+ WY RM
Sbjct:   43 IKIYQYEICPFCNKVKAVLDYCKFSYTTVEVNPLSKKEINFTRELPSDHACSNYRKVPIALVGEDLIADSSLILNAIVEKLSEE---KEEKIKLLCSSAKDPQVQEWVRWADQELAVLLFPNLTRTFSESFQAFSYVQQVPTFSLLDKLSNHVAGATAMWLAQGKLKSKYKISDERQALALALAKWADALD--RKPFLGGSSPNLADLCVFGVLRAVDGSAT-QTVIEESPVSDWYGRM 275
[Close]
BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: A0A7S0IJQ6_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IJQ6_9EUKA)

HSP 1 Score: 244 bits (624), Expect = 2.230e-75
Identity = 121/239 (50.63%), Postives = 163/239 (68.20%), Query Frame = 3 
Query:  123 IMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIKFSEDYRKVPIVRVGG------EFLKDSPIIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANGP--FIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPWYQRMVTTLE 815
            + ++QY ICPFCNK+KA++D   IPY   +VNPLTKKEIKFS++YRKVPI  +GG        + DSP+I D L+ R+     +  +E A F S  + +WA W+DK+LAVLLFP +TR F+ES+QAF YV  V  FS +DK +NQV+G+ AMW AQGKIKKKY IDDE  A+  A+  W   L++  G   F GG KP+LGD+ VYGC+KAI+   T  ++++  GV PWY+RM   ++
Sbjct:   50 VRLFQYDICPFCNKIKAMLDLHKIPYETVDVNPLTKKEIKFSKEYRKVPIAMLGGLEGSGAVQVNDSPLIADTLLERMELSKAVRSDELAHFRSATSLEWAEWSDKKLAVLLFPRMTRTFAESFQAFGYVMQVPHFSMVDKLSNQVVGAFAMWMAQGKIKKKYAIDDEAAAVREAIAHW---LKEGVGEASFAGGQKPHLGDVAVYGCLKAIDRTSTFSEIMAETGVKPWYERMTAEVQ 285
[Close]
BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: A0A8J5XKP9_DIALT (Prostaglandin E synthase 2 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKP9_DIALT)

HSP 1 Score: 244 bits (624), Expect = 2.870e-75
Identity = 117/239 (48.95%), Postives = 166/239 (69.46%), Query Frame = 3 
Query:  108 LEGEDIMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIKFSEDYRKVPIVRVGGEFLK--DSPIIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANGPFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPWYQRMVTTLES 818
            L    + +YQY+ICPFCNK+KAV+DY  +PY+  +VNPLTK E+KFS DY+KVP++      L+  DS  I+  ++ +L+E G +   E A F SP+A++W+ W DKQLAV ++PN+TR+F ES QAF+YV DV  FS LDK AN+ +G+ AM  AQGKIKKKYNI DER  +F+ L++W+  +E  +  F GGD+P+L DL VYGC++ I+   TH  +++   + PWYQR+   + S
Sbjct:   61 LASRALTLYQYEICPFCNKVKAVLDYFDVPYATVDVNPLTKAELKFSADYKKVPVLTAASPDLQLNDSADILAHVLTQLKEAGALP--ERAAFDSPEAQRWSAWVDKQLAVYIYPNITRSFHESQQAFAYVEDVPHFSALDKLANRYVGALAMVFAQGKIKKKYNIVDERAEMFAKLREWS--VEVGDRRFHGGDQPDLADLSVYGCLRGIKATSTHAQIMAETDLQPWYQRVEAAVGS 295
[Close]
BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Match: A0A7S2C557_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C557_9EUKA)

HSP 1 Score: 244 bits (622), Expect = 7.120e-75
Identity = 122/234 (52.14%), Postives = 161/234 (68.80%), Query Frame = 3 
Query:  123 IMVYQYKICPFCNKLKAVMDYLGIPYSITEVNPLTKKEIK-FSEDYRKVPIVRVGGEFLKDSPIIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTRNFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDERKALFSALKDWTDALEDANG--PFIGGDKPNLGDLCVYGCIKAIEGLDTHKDVLSREGVAPWYQRMVTTLE 815
            + VYQY+ICPFC K+KA++D   +PY+ TEVNPLTK EIK +S  Y+KVPI  + GE + DSP+I   ++ RL   G +  +    F SP A +WA W+D++LAVL FPN+TR F E+Y+AF YV  V  FS LDKAANQ IGS  MW AQGKIKKKY IDDER+A  S +  W   + +A G  PF GG++PNL D+ V+G +KAI+    H D+++   VAPWY+RM+  +E
Sbjct:   70 VQVYQYEICPFCCKVKALLDIHRVPYATTEVNPLTKSEIKAWSGGYKKVPIALIAGEQVNDSPVICTQILDRLAASGQIDKKLLDEFRSPSALEWAKWSDEKLAVLAFPNITRTFGEAYEAFGYVWGVPHFSQLDKAANQAIGSFFMWMAQGKIKKKYGIDDEREAFVSGVNKW---MSEAVGTTPFAGGERPNLADVAVFGLLKAIDRTAAHSDIMAATSVAPWYERMLEAVE 300
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9874.17835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK1_ECTSI3.610e-14782.57Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxI... [more]
A0A835YKS9_9STRA1.780e-10561.42Prostaglandin E synthase 2 n=1 Tax=Tribonema minus... [more]
W7TEG9_9STRA5.810e-9160.17Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae... [more]
A0A7S1XY88_9STRA9.750e-8456.95Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phae... [more]
A0A7S0MFA7_9CRYP2.470e-8353.53Prostaglandin E synthase 2 n=1 Tax=Cryptomonas cur... [more]
A0A0M0JG54_9EUKA1.420e-7952.84Prostaglandin E synthase 2 n=1 Tax=Chrysochromulin... [more]
A0A7S0HU74_9CRYP3.720e-7652.30Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0IJQ6_9EUKA2.230e-7550.63Prostaglandin E synthase 2 n=1 Tax=Calcidiscus lep... [more]
A0A8J5XKP9_DIALT2.870e-7548.95Prostaglandin E synthase 2 n=1 Tax=Diacronema luth... [more]
A0A7S2C557_9EUKA7.120e-7552.14Prostaglandin E synthase 2 n=1 Tax=Haptolina brevi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9874contigS-dermatodea_contig9874:1201..6645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score427.9
Seed ortholog evalue3.4e-117
Seed eggNOG ortholog2880.D8LIK1
KEGG rclassRC00672
KEGG koko:K05309
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
EggNOG free text desc.prostaglandin-E synthase activity
EggNOG OGsKOG3029@1,KOG3029@2759
EC5.3.99.3
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutathione S-transferase, C-terminal-like
Ec32 orthologEc-18_003320.1
Exons4
Model size1169
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9874.17835.1prot_S-dermatodea_contig9874.17835.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9874 1549..6637 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.2982683-UTR-S-dermatodea_contig9874:1200..15481622925436.2982683-UTR-S-dermatodea_contig9874:1200..1548Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9874 1201..1548 -
1694079932.3380368-UTR-S-dermatodea_contig9874:1200..15481694079932.3380368-UTR-S-dermatodea_contig9874:1200..1548Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9874 1201..1548 -
1622925436.3716516-UTR-S-dermatodea_contig9874:6637..66451622925436.3716516-UTR-S-dermatodea_contig9874:6637..6645Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9874 6638..6645 -
1694079932.4037693-UTR-S-dermatodea_contig9874:6637..66451694079932.4037693-UTR-S-dermatodea_contig9874:6637..6645Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9874 6638..6645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.3173473-CDS-S-dermatodea_contig9874:1548..18301622925436.3173473-CDS-S-dermatodea_contig9874:1548..1830Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9874 1549..1830 -
1694079932.3555946-CDS-S-dermatodea_contig9874:1548..18301694079932.3555946-CDS-S-dermatodea_contig9874:1548..1830Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9874 1549..1830 -
1622925436.3306642-CDS-S-dermatodea_contig9874:2869..29291622925436.3306642-CDS-S-dermatodea_contig9874:2869..2929Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9874 2870..2929 -
1694079932.369628-CDS-S-dermatodea_contig9874:2869..29291694079932.369628-CDS-S-dermatodea_contig9874:2869..2929Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9874 2870..2929 -
1622925436.3414514-CDS-S-dermatodea_contig9874:4230..44971622925436.3414514-CDS-S-dermatodea_contig9874:4230..4497Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9874 4231..4497 -
1694079932.3797667-CDS-S-dermatodea_contig9874:4230..44971694079932.3797667-CDS-S-dermatodea_contig9874:4230..4497Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9874 4231..4497 -
1622925436.3570728-CDS-S-dermatodea_contig9874:6433..66371622925436.3570728-CDS-S-dermatodea_contig9874:6433..6637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9874 6434..6637 -
1694079932.391821-CDS-S-dermatodea_contig9874:6433..66371694079932.391821-CDS-S-dermatodea_contig9874:6433..6637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9874 6434..6637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9874.17835.1

>prot_S-dermatodea_contig9874.17835.1 ID=prot_S-dermatodea_contig9874.17835.1|Name=mRNA_S-dermatodea_contig9874.17835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=271bp
MAASDGARVSFCSAAALQARHGGGETGAWSGKHLEGEDIMVYQYKICPFC
NKLKAVMDYLGIPYSITEVNPLTKKEIKFSEDYRKVPIVRVGGEFLKDSP
IIIDALVARLREQGIMSDEEHAVFCSPDAEKWAVWADKQLAVLLFPNLTR
NFSESYQAFSYVNDVETFSFLDKAANQVIGSTAMWAAQGKIKKKYNIDDE
RKALFSALKDWTDALEDANGPFIGGDKPNLGDLCVYGCIKAIEGLDTHKD
VLSREGVAPWYQRMVTTLES*
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mRNA from alignment at S-dermatodea_contig9874:1201..6645-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9874.17835.1 ID=mRNA_S-dermatodea_contig9874.17835.1|Name=mRNA_S-dermatodea_contig9874.17835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5445bp|location=Sequence derived from alignment at S-dermatodea_contig9874:1201..6645- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGGCAGATGGCGGCCTCGGATGGGGCGCGGGTCTCGTTTTGCTCGGCG
GCGGCTTTGCAGGCAAGGCATGGGGGGGGCGAGACGGGCGCCTGGAGCGG
AAAGCACCTTGAGGGGGAGGACATCATGGTCTACCAGTACAAGATATGCC
CATTTTGCAACAAGCTCAAGGCGGTGATGGACTACCTCGGCATCCCTTAC
AGCATCACAGAGGTTGGTGTCGGCGTTCTGTGAAGATGCCGCACGGTCTT
CCGATTCCAGCACATCATCAATTTGCTACATCTGTGTACTTATTGATTGC
GCCATGTCTCTCTATAAGCATACGGCAAATAGCTCGTGTGACAGCATAGT
GTTCGAGTCTGGGTGTGAGCAGTCTCCGCAGATAGCGCCTACTGGGAGAG
ATCTGTTCTGGATGATTTTATTGGTGAAAAGGCAGCACATAGACACGCTT
CTCTTCCAGTATCCCGCTGGACGTAAGATGTGTTCAGTATGTACGCCGTG
GGTTGCGCATCTCGGGTCCCTTGACTACCCTTGACCCTTGAGTCAACGGT
AGGGCTCTGGTCTATGACTTTCAAAGCACCCAGACGACAGCGCTACGGTA
AACTAGACAAACCACTATACTGTTTGTACAAGTGTTGCGTGCATCATCTG
TGTTATTACAGTGAGTTACTACTTAAATAGTATGCTACGTTGGTACTGTT
TGTATAATACGTCCTTATGGTTGACACCCCTTCTTCATGATTGCGCAGCT
ATGCCGCCGTCACCTGGAAGTAACGTACACAGCGTAAGCTATCATTTCGT
GATCGGCCTGGTATGTAGGGCCATCAGAGTGTGATTTCCTCTATGATATG
CGATATAGCGTGGTATGTATGATGTCTGTGCATACAAATATATTATAACA
GTCCACATACAATGCAACGGGGGTTTCGATACGACACGGACGTGTTTCCT
TTGGGTTGACGGGGCAGTACGGGGGGGCATCCAACCGATCTCGCCCCCCA
TGACCTGGTGCGAACACGGTGGATCCTCTCGCTGAGTCATCGCGTCCCCA
TGGTATCGTGGCGATTCTGCTGTCTTTGTGTGTGCTTGCTTATGCTTGGC
TGTAACAGAAGGAGGATTGCTTTTAGCAGAGCAGGAAATGTCCTCCGCTG
CGCATGATCTATTGACCTTGATACACGGAACGCAGCGAGGAATTTGTTCA
GAGTTGGTCTATCGTTGCCCCTCAAATCTCTCGCCGACCTTTTGTGGGCG
TTGCCGCTGCTATAGTACTACTACAGCTGTAGTTAGACGTAATGTTATTA
CGGAGGCACACAAAATATCCCATACAGTGTAAGTATACCCAGCATAACAA
ACAATCCGTATATCAACCTGGTCTGGCCTTGCGACATCATCTGTTAGTAT
CTGCATTATTCCGGCCTGGAATGTCAATAAAGATATGTGTACAATCCTTA
CTATTAATACTGTATTACCGACGTACACAGTAATCAAGACCAAATCTCAT
AACCATGAATACGAAACTATTCCGGTCATGAGTACCCAAGCAAAAACAAA
AAAGACACGAGATATGGCCATATACAAGAACATCGACCTTGAAATCTCGA
TAATTCCGGCCTGTTTTTATAATTCTAGGTTGAGACTTGTGGCAAATTTG
GACCTGTTAACTGTGGTCCCCTTTAATACTAATACAAGGTAATCGGGCCA
ACGTCTTAAAAACAAACCTTGAACACGCCATTGAGCAGAATTTTGGTTCT
GACTGGTACTATTATGCTGGTACTGATTACTACAGTATCACACTCATTAC
TATTTTACTGATTACCATTATACCGATTACTGTCTGTTATACTGATTACT
ATTTTACTGATTACTATTATGCTTATTTCTATGATGCTGATTACTATCAC
ACTGATTACTGATATACTGATTACTACTAAACCGATTACTGCGTACCTCC
GTAATAAATTATTTCATCGCGCGCTCATTTGCTCCGTAGCGCTTTACGTA
TGATATGTACACGCATGTACGATTCCCGAGCCCTTTACGCTCCGAGGACC
GCTCGTTGACTTCTTCTGCACCACAACCAAAGACCAAAATAACCCACCAA
AAAAACATCCTTGAAACAAAAAAAGCACCCACACACACATATGCACAGGT
GAACCCGCTGACGAAGAAGGAGATAAAGTTCTCGGAAGATTACCGAAAGG
TTCCGATCGTTCGCGTGGGCGGGGAGTTCTTGAAGGACTCGCCCATAATC
ATAGACGCGCTGGTAGCACGGCTTCGAGAGCAGGGGATCATGTCGGACGA
GGAGCACGCGGTGTTCTGCTCGCCCGACGCGGAGAAGTGGGCGGTGTGGG
CGGACAAGCAGCTGGCGGTGCTGCTCTTCCCAAACCTTACCAGAAATTTC
TCCGAGTCGTACCAGGTGTGTTTTCTTTTCCAAGGTAGTCGGTCCGCTTG
CCCTCCTCGCTGGTTCGTTATTGTTCGTTGGTCCATCCGGTTATTTATCA
CGAAAGATTTGTTGCGTATTCGGCGCCGTTTTTTTTTCTGTTTGCGTTTT
TTTACTGTTTCGTTTGCTTCCACCTATATATTGTACCTCGAACAAGCATC
TCTTTTTTTGCTGTTCTTCGCGCGGCGCACCTTCCCCGGTAACGAGCGAG
GTGGACAACGCACGGTATAGCTGCTATTATATGTAGACAGCATCCAAGGG
GTGTTGGAAGATTGCACGGGGAAAAGTTGGGCAAAGTCGGATACTATTAT
GCACAGGAGAGAAGAGACAAAAGGGCCTCGGTTCGCCGGACCAAAATCTA
ATTGCACGTCCAGTACAGCTGTAGTAGTATATGTGCTCGTATTCAAATTG
AATGTGTGGGCAGTCGGCGTAGCTTGATATGACGCGCAGTTACTCGCCAT
GCCAAGTGCGTCGCGAGGGGTGGCCAAAGCGGGGGTGGCCTGTATTTACC
CGTGGGTCATGAAAACAACAACCAATATAAGTGTAAATATACAATAGCTA
CGGTGTAGGATCATACCTGTGTTGTTTCGCCTCGGACAGAAGGACGGTGG
TACATGGATGGAGCTTTCAATACTTCAGGGCCTCTTTCTGGATATGACGT
CATCCCTTAGGGGGTACGGCAGTTTCCGGCATGGTTTTGGTGGGTTCATT
GGTGCCAGCGGCAGAGAAGAGGTGTGGTCGACATCGCCGGCGATTTTAGC
GAAACCTTGACTTCAATTTCGTTCCAACCGCCGGGCGAGTGCGTGCCGGA
TGGACGCTAGCGTTTGTTGGCGCGCGCTCTCCGCCTACGCTACAAAACAG
CAGTACCTGCAGTCGCGCAAGGAGTTCAGACAACAACGAAACCAACGTGT
CCTTCGTGGGTCGCTATCGTGTGCATCGGGGTGGGACCCCGGGAACGGGG
GGCAGGGGCGTCTCCGATTGGCTCATCGTAGCAAACAGAATGGCAAGGCA
GTTATCACCCGCGTATGTAGTGTAGCGGAGAGTCCCCCCCACGCTGTTCC
CTCCACTAAGTGCAGCTCTGCCGATCGTGTGTAGAACATCCCCGAAGGTC
GTCGATTACTACATGTTATCCGCTTACGTAGCAGATCGCCAGCGCTGCTC
TACGTCACGCACACGGTCCGCTTTGCAAGTTATCGAAGAAGCAGCTCGCG
CAGTTTACAACACGTCCTCGCTTTCGGCCCCCTTGGTCGCGTGCGACGGT
CGCGTGCGACGTCCAGGCGTTCTCGTACGTCAACGACGTCGAAACCTTCA
GCTTTTTGGACAAGGCAGCGAACCAGGTTAGTCCCCCAAGACTAAGGCAC
GACGGCAAGCGTAGCGCTATCGTGAGACGGTGTTCTCTTGTGATGGATTG
ATATTGGCGATCGTACTATTGCAGGTTATTCTGCAACATTAGTATAGGTA
GACTCATATTTGGGGTGGTCTATCAGACGAGAAACAAACAAAAAAAGGCC
AAAGGAAGGCGTAACAAACACCACAATTGCATCTATATAATTGTATAGGC
CACGCAGCCATCGAAGCTCTGCGGCAATTTTCCTTGCAGGATTCCTGTAG
CGTGATGCTTGACCGCGGAATGACACCCCTTTGTTGCGATGTACACGGCC
TGGTGTGCTGTAACGGCAAGGGTCGGACTTGCGCATGTGAACGAAAATCT
CGGCGAGTCTTGCAGCTCGCAACTACACCTTTGCGATGTGTCGTAAGGAG
ATAAACTGGTGTGCGGCTAATCCACAACTCAGTTGGCGTGTGGCTGTTGC
GATGCCAAGCGGCTTTTTACGAGGTGACGACGAGATACCATCTGTTATTT
GTCATCGCACTGCCTGTTAAAAGCAAATTTGCCGAATGCCCTTGGGCAGC
TGTTTTTGTCTGCGCGAGACGCTGCTCCGTTGCTGATTAGGCAACTCTTT
GCCCGTGTCCGAGCACCTGGCGTGCTCGCTGATAGCTCAACTTGTTGTTG
CCGTGTTCGAACACTTGCTGTGCTCGCACGGTGTGTCTTGACAACAGCTT
GTTTTGTTGTTTTCGCATCACAGTACGTGCCTCATATAGTATTACCAAAC
TCAGTACATATGCCGCACACGTCCGTTTTTTCTCGTCACCCCTGATGTTT
TTCCTTGCATGAACCCGATCCCGACCAACGAGCACTCGGTCGCTTACCTC
GACGCTCCTTAGACAATCCTGCTGTTGCCGACAGCCCCCCCCCCACCCCG
CCCCCCCCCCAATCGCACGCGCTCACGCACACAACACCATCCACCCGCAC
AAACAGTGCGCCGGCGGCAATTAATTCCCAAACGAACACAAATTTACGAC
GGTCATGCTTCTCAGGTGATCGGATCGACGGCGATGTGGGCGGCTCAGGG
CAAGATAAAGAAGAAGTACAACATCGACGACGAGCGCAAGGCTCTCTTCT
CGGCCCTGAAGGACTGGACCGACGCGCTCGAGGATGCCAACGGGCCCTTC
ATCGGGGGGGACAAGCCCAACCTCGGCGACCTCTGCGTGTACGGGTGCAT
AAAGGCTATCGAGGGCCTCGACACGCACAAAGACGTCTTGTCGAGGGAAG
GCGTGGCGCCATGGTATCAGAGGATGGTGACCACGTTAGAGTCCTGACCT
TATTTCCTTTTGCGGTTGGACCGGCGGCTATGGGGGGGGGCAGGGGCGTC
GTCCGCTGCGCTCTATAATACTACAGTACTGAAGAACCTCGACCTTTTTT
TTTTGTTGGTCGCTGTTTTTGTGAGGATTAGTCTTCGTCGACGTGTTTTG
TTGATTCCCTCACGCGGTGGTAAATATAGTGTGATGCGTTTTGTTGGGAA
AGACAACGCAGGAGGTGTACAGGTACAACCCGTCACTCATCGGAACTGTT
TATGGTAACTAACGGTCGCTCGCGTAAACTGGTGCTTGCTTAGCTTTTTC
AGGGTTCGGACATCGGCCACACGTTTCGGCAATAATTGACCCTGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9874:1201..6645-

>mRNA_S-dermatodea_contig9874.17835.1 ID=mRNA_S-dermatodea_contig9874.17835.1|Name=mRNA_S-dermatodea_contig9874.17835.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at S-dermatodea_contig9874:1201..6645- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGCCTCGGATGGGGCGCGGGTCTCGTTTTGCTCGGCGGCGGCTTT
GCAGGCAAGGCATGGGGGGGGCGAGACGGGCGCCTGGAGCGGAAAGCACC
TTGAGGGGGAGGACATCATGGTCTACCAGTACAAGATATGCCCATTTTGC
AACAAGCTCAAGGCGGTGATGGACTACCTCGGCATCCCTTACAGCATCAC
AGAGATGGCGGCCTCGGATGGGGCGCGGGTCTCGTTTTGCTCGGCGGCGG
CTTTGCAGGCAAGGCATGGGGGGGGCGAGACGGGCGCCTGGAGCGGAAAG
CACCTTGAGGGGGAGGACATCATGGTCTACCAGTACAAGATATGCCCATT
TTGCAACAAGCTCAAGGCGGTGATGGACTACCTCGGCATCCCTTACAGCA
TCACAGAGGTGAACCCGCTGACGAAGAAGGAGATAAAGTTCTCGGAAGAT
TACCGAAAGGTTCCGATCGTTCGCGTGGGCGGGGAGTTCTTGAAGGACTC
GCCCATAATCATAGACGCGCTGGTAGCACGGCTTCGAGAGCAGGGGATCA
TGTCGGACGAGGAGCACGCGGTGTTCTGCTCGCCCGACGCGGAGAAGTGG
GCGGTGTGGGCGGACAAGCAGCTGGCGGTGCTGCTCTTCCCAAACCTTAC
CAGAAATTTCTCCGAGTCGTACCAGGTGAACCCGCTGACGAAGAAGGAGA
TAAAGTTCTCGGAAGATTACCGAAAGGTTCCGATCGTTCGCGTGGGCGGG
GAGTTCTTGAAGGACTCGCCCATAATCATAGACGCGCTGGTAGCACGGCT
TCGAGAGCAGGGGATCATGTCGGACGAGGAGCACGCGGTGTTCTGCTCGC
CCGACGCGGAGAAGTGGGCGGTGTGGGCGGACAAGCAGCTGGCGGTGCTG
CTCTTCCCAAACCTTACCAGAAATTTCTCCGAGTCGTACCAGGCGTTCTC
GTACGTCAACGACGTCGAAACCTTCAGCTTTTTGGACAAGGCAGCGAACC
AGGCGTTCTCGTACGTCAACGACGTCGAAACCTTCAGCTTTTTGGACAAG
GCAGCGAACCAGGTGATCGGATCGACGGCGATGTGGGCGGCTCAGGGCAA
GATAAAGAAGAAGTACAACATCGACGACGAGCGCAAGGCTCTCTTCTCGG
CCCTGAAGGACTGGACCGACGCGCTCGAGGATGCCAACGGGCCCTTCATC
GGGGGGGACAAGCCCAACCTCGGCGACCTCTGCGTGTACGGGTGCATAAA
GGCTATCGAGGGCCTCGACACGCACAAAGACGTCTTGTCGAGGGAAGGCG
TGGCGCCATGGTATCAGAGGATGGTGACCACGTTAGAGTCCTGAGTGATC
GGATCGACGGCGATGTGGGCGGCTCAGGGCAAGATAAAGAAGAAGTACAA
CATCGACGACGAGCGCAAGGCTCTCTTCTCGGCCCTGAAGGACTGGACCG
ACGCGCTCGAGGATGCCAACGGGCCCTTCATCGGGGGGGACAAGCCCAAC
CTCGGCGACCTCTGCGTGTACGGGTGCATAAAGGCTATCGAGGGCCTCGA
CACGCACAAAGACGTCTTGTCGAGGGAAGGCGTGGCGCCATGGTATCAGA
GGATGGTGACCACGTTAGAGTCCTGA
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