mRNA_S-dermatodea_contig9873.17833.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9873.17833.1
Unique NamemRNA_S-dermatodea_contig9873.17833.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9873.17833.1 vs. uniprot
Match: D7G1Z6_ECTSI (AGC family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z6_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.380e-12
Identity = 47/96 (48.96%), Postives = 55/96 (57.29%), Query Frame = 2 
Query:    5 LRRRARFSGWKTDAVYIELRSTALLAFAGGVQSASSRGTGGTSPSAGG------GLANLAAKIMHPQQKQVG--EWSWSVDLAGAERVVELPALSK 268
            LRRR RFS W+ ++VY ELRSTALLAF       ++  T G               A LAAKIMHP+       EW WS+DL GAERVVELP  +K
Sbjct:  139 LRRRGRFSKWR-ESVYFELRSTALLAFTDNKPGKNTGTTAGAXXXXXXXXXXXXSFACLAAKIMHPRHSAHAGVEWGWSMDLCGAERVVELPGSTK 233
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BLAST of mRNA_S-dermatodea_contig9873.17833.1 vs. uniprot
Match: A0A6H5L6T3_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.060e-11
Identity = 46/97 (47.42%), Postives = 56/97 (57.73%), Query Frame = 2 
Query:    5 LRRRARFSGWKTDAVYIELRSTALLAFAGGVQSASSRGTGGTSPSAGG-------GLANLAAKIMHPQQKQVG--EWSWSVDLAGAERVVELPALSK 268
            LRRR RFS W+ +++Y ELRSTALLAF     +   + TG T               A LAAKIMHP+       +W WS+DL GAERVVELP  +K
Sbjct:  128 LRRRGRFSKWR-ESLYFELRSTALLAF---TDNKPGKNTGTTXXXXXXXXXXXXXSFACLAAKIMHPRHSAHAGVDWGWSMDLCGAERVVELPGSTK 220
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9873.17833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1Z6_ECTSI2.380e-1248.96AGC family protein kinase n=1 Tax=Ectocarpus silic... [more]
A0A6H5L6T3_9PHAE1.060e-1147.42PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9873contigS-dermatodea_contig9873:3295..3562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAGC family protein kinase
Ec32 orthologEc-07_003570.1
Exons1
Model size270
Cds size267
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.2531972-UTR-S-dermatodea_contig9873:3294..32951622925436.2531972-UTR-S-dermatodea_contig9873:3294..3295Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9873 3295..3295 +
1694079932.3047957-UTR-S-dermatodea_contig9873:3294..32951694079932.3047957-UTR-S-dermatodea_contig9873:3294..3295Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9873 3295..3295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.2662313-CDS-S-dermatodea_contig9873:3295..35621622925436.2662313-CDS-S-dermatodea_contig9873:3295..3562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9873 3296..3562 +
1694079932.315084-CDS-S-dermatodea_contig9873:3295..35621694079932.315084-CDS-S-dermatodea_contig9873:3295..3562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9873 3296..3562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9873.17833.1prot_S-dermatodea_contig9873.17833.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9873 3296..3562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9873.17833.1

>prot_S-dermatodea_contig9873.17833.1 ID=prot_S-dermatodea_contig9873.17833.1|Name=mRNA_S-dermatodea_contig9873.17833.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MLRRRARFSGWKTDAVYIELRSTALLAFAGGVQSASSRGTGGTSPSAGGG
LANLAAKIMHPQQKQVGEWSWSVDLAGAERVVELPALSK
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mRNA from alignment at S-dermatodea_contig9873:3295..3562+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9873.17833.1 ID=mRNA_S-dermatodea_contig9873.17833.1|Name=mRNA_S-dermatodea_contig9873.17833.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=268bp|location=Sequence derived from alignment at S-dermatodea_contig9873:3295..3562+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGCTTCGCCGGAGAGCCAGGTTCTCCGGCTGGAAGACGGACGCCGTAT
ACATCGAGCTGCGCTCGACCGCGCTGCTAGCGTTTGCTGGGGGCGTTCAG
AGCGCCTCCAGCAGAGGAACTGGCGGAACGTCCCCATCCGCCGGGGGGGG
CTTGGCGAATCTGGCCGCCAAGATCATGCACCCGCAGCAGAAGCAGGTCG
GGGAGTGGAGCTGGAGCGTTGACCTCGCGGGCGCGGAGCGCGTGGTCGAG
CTGCCGGCGCTGTCGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9873:3295..3562+

>mRNA_S-dermatodea_contig9873.17833.1 ID=mRNA_S-dermatodea_contig9873.17833.1|Name=mRNA_S-dermatodea_contig9873.17833.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig9873:3295..3562+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTCGCCGGAGAGCCAGGTTCTCCGGCTGGAAGACGGACGCCGTATA
CATCGAGCTGCGCTCGACCGCGCTGCTAGCGTTTGCTGGGGGCGTTCAGA
GCGCCTCCAGCAGAGGAACTGGCGGAACGTCCCCATCCGCCGGGGGGGGC
TTGGCGAATCTGGCCGCCAAGATCATGCACCCGCAGCAGAAGCAGGTCGG
GGAGTGGAGCTGGAGCGTTGACCTCGCGGGCGCGGAGCGCGTGGTCGAGC
TGCCGGCGCTGTCGAAGATGCTTCGCCGGAGAGCCAGGTTCTCCGGCTGG
AAGACGGACGCCGTATACATCGAGCTGCGCTCGACCGCGCTGCTAGCGTT
TGCTGGGGGCGTTCAGAGCGCCTCCAGCAGAGGAACTGGCGGAACGTCCC
CATCCGCCGGGGGGGGCTTGGCGAATCTGGCCGCCAAGATCATGCACCCG
CAGCAGAAGCAGGTCGGGGAGTGGAGCTGGAGCGTTGACCTCGCGGGCGC
GGAGCGCGTGGTCGAGCTGCCGGCGCTGTCGAAG
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