mRNA_S-dermatodea_contig9871.17832.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9871.17832.1
Unique NamemRNA_S-dermatodea_contig9871.17832.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9871.17832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9871contigS-dermatodea_contig9871:2188..3614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9871.17832.1prot_S-dermatodea_contig9871.17832.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9871 2190..3614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.147728-CDS-S-dermatodea_contig9871:2189..22341622925436.147728-CDS-S-dermatodea_contig9871:2189..2234Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9871 2190..2234 -
1694079932.261401-CDS-S-dermatodea_contig9871:2189..22341694079932.261401-CDS-S-dermatodea_contig9871:2189..2234Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9871 2190..2234 -
1622925436.1574664-CDS-S-dermatodea_contig9871:3010..32291622925436.1574664-CDS-S-dermatodea_contig9871:3010..3229Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9871 3011..3229 -
1694079932.2702165-CDS-S-dermatodea_contig9871:3010..32291694079932.2702165-CDS-S-dermatodea_contig9871:3010..3229Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9871 3011..3229 -
1622925436.170562-CDS-S-dermatodea_contig9871:3581..36141622925436.170562-CDS-S-dermatodea_contig9871:3581..3614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9871 3582..3614 -
1694079932.278507-CDS-S-dermatodea_contig9871:3581..36141694079932.278507-CDS-S-dermatodea_contig9871:3581..3614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9871 3582..3614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9871.17832.1

>prot_S-dermatodea_contig9871.17832.1 ID=prot_S-dermatodea_contig9871.17832.1|Name=mRNA_S-dermatodea_contig9871.17832.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
SASASGTENREDLDVELELQAAAAQRAELDGSGNGSGSSDGGGSSRTGGD
MAEFDEDEDIADAASAAAAAQAAAVTAKEKQEEKAAREQAARDAALAQA
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mRNA from alignment at S-dermatodea_contig9871:2188..3614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9871.17832.1 ID=mRNA_S-dermatodea_contig9871.17832.1|Name=mRNA_S-dermatodea_contig9871.17832.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1427bp|location=Sequence derived from alignment at S-dermatodea_contig9871:2188..3614- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTGCGTCGGCTTCTGGAACGGAGAACCGCGAGGTGAGTTGTTGAGGTTT
TGATATGTTTCGGTTTGTCTTCGTTTTGTTTTTTTTGTTCTTGTTTTTGT
TTGTTTTTGGTGCGGGTTTAGTTTGGTTTGGCTTGTTTGGGTTTGGTCGG
TTTGATTTGGCCGCTCGGTCGCTCTGGCAGTCCTCCGTCAGCCCCCACTC
CTCCCACTCCAACACCTACCCCACCAACACCTACCCCACCAACACCCCCA
CCCCAACACCTAAACCCTAGCTAGCCCTATAACTCTATCCCCTAACGCCC
CATCGCCCCCATCCCACCTCCATCCCAACATCGTGCGCTACCGCTCTTTC
CTTCCTGCCTTCCTTCTCATCCCATCCCATCGAAGGACCTAGACGTGGAG
CTTGAACTGCAGGCGGCGGCCGCTCAGCGCGCGGAGCTCGACGGGAGCGG
GAACGGAAGCGGAAGCAGCGACGGGGGGGGGAGTAGCCGTACCGGTGGCG
ATATGGCAGAGTTTGACGAGGATGAAGACATTGCCGACGCTGCTTCCGCT
GCTGCTGCTGCGCAGGCGGCCGCGGTGACTGCCAAGGAGAAACAGGAGGA
AAAGGTGAGACGCCAGCAGGTATGCACGGTGGTGCACTTGTGCGTGCGCC
TGACACCGCGATATACCCGTAGTGACGACGTTCTTCGTAAAAACGGGATT
AGTCCCAAGAGGGTAAACTGCGCTCCGTGTTAGATATCATTCGCTGTGCG
TTTTGGTTGAAGAAATTACTGTAAAATTTAAATGTGTTGGAGCCGGGTGA
GTGCATTTTCTACCGCGTGCGTGCAACATTTCCATTCCCAACACTGGTGT
TTGAACAACTCACCCGTCCCACCACGACCCCCTGCGCGAGCGAGCGTGGG
AGGCTGCTTTGACTAGAATACAAATGCCAAATTCCGGAACCTCTTTTGCG
TGTACTCTTTTTTTTGTTACTAGTTATAATTTGTAATTTCGCATTTCCGA
CCTTGCTTTGTCTACTCCTCCGGAACTGAGTTCGTTTTGGGGGTGAATGC
CATCTGGCGCGAAGTATTTTACATCCTCAACCGTGACCGAATGGTAACTA
CGGGGGGAACGTGATGGTAAACCTAGCCACGCCTAGCTTGCATTCACGGT
GGTGGCACTTGTGTACCCGTTGCCGCGATGTTCTGTACAGTATCCGTAGC
AATGTTATTCTACGAAAAAACGGACTCAGTGCGTAAAGGGCTATAACTGT
GGTCCTACGTAAAACAGACAAATTGGCATTTGACACGTTTCTCTTATAAT
ACAAGCAGTAATGTCGCAACTCCGACTTTTCATTATTAAAAGTATTGAAT
ATCGTTTTTTTATACCAAATTTTCCTGCAGGCGGCTCGAGAGCAGGCCGC
GAGGGATGCCGCCTTGGCCCAAGCAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9871:2188..3614-

>mRNA_S-dermatodea_contig9871.17832.1 ID=mRNA_S-dermatodea_contig9871.17832.1|Name=mRNA_S-dermatodea_contig9871.17832.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig9871:2188..3614- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTGCGTCGGCTTCTGGAACGGAGAACCGCGAGTCTGCGTCGGCTTCTGG
AACGGAGAACCGCGAGGACCTAGACGTGGAGCTTGAACTGCAGGCGGCGG
CCGCTCAGCGCGCGGAGCTCGACGGGAGCGGGAACGGAAGCGGAAGCAGC
GACGGGGGGGGGAGTAGCCGTACCGGTGGCGATATGGCAGAGTTTGACGA
GGATGAAGACATTGCCGACGCTGCTTCCGCTGCTGCTGCTGCGCAGGCGG
CCGCGGTGACTGCCAAGGAGAAACAGGAGGAAAAGGACCTAGACGTGGAG
CTTGAACTGCAGGCGGCGGCCGCTCAGCGCGCGGAGCTCGACGGGAGCGG
GAACGGAAGCGGAAGCAGCGACGGGGGGGGGAGTAGCCGTACCGGTGGCG
ATATGGCAGAGTTTGACGAGGATGAAGACATTGCCGACGCTGCTTCCGCT
GCTGCTGCTGCGCAGGCGGCCGCGGTGACTGCCAAGGAGAAACAGGAGGA
AAAGGCGGCTCGAGAGCAGGCCGCGAGGGATGCCGCCTTGGCCCAAGCAG
CGGCTCGAGAGCAGGCCGCGAGGGATGCCGCCTTGGCCCAAGCA
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