mRNA_S-dermatodea_contig9870.17831.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9870.17831.1
Unique NamemRNA_S-dermatodea_contig9870.17831.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: D7FVU2_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU2_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 4.400e-112
Identity = 165/265 (62.26%), Postives = 198/265 (74.72%), Query Frame = 1
Query:    7 YPIDGKRLMFKVLDMVDWLSQHDDISTDFTTFLEGWFLGTPSSELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLGRILEPGHNPDAICMRHTLDPVVPFTHRPLALYALFGLGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCHGRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVGWMARLRP 801
            YPIDGKRL+ KVL+ VDWLS+ +D  T F +FL GWFLG   SELK  N+VVFLAW +YAK+V +LSK E  NV++M+K++E RLGR LEPG N    C+RHTLD VVPF+HRPLALYA+ GL R  +R  L   GFRRR+APCG+F YW+R+A   P       A    + G  PIVFFHG+G GL  Y LA+WK+C  RTSI+VE+PSI MSL LLRGHTPPSE QL ES+EGI++RHG+KRA FFGHSFGSI V WMAR +P
Sbjct:    3 YPIDGKRLIHKVLETVDWLSEQEDADTTFESFLSGWFLGADCSELKRGNLVVFLAWTLYAKDVDMLSKAERKNVMSMIKLIEGRLGRTLEPGFNERVKCIRHTLDRVVPFSHRPLALYAVLGLARALLRIALGFCGFRRRLAPCGSFMYWHRQA--PPSAAAXAAAMPEKTEGPGPIVFFHGVGAGLPFYVLALWKMCRHRTSIIVEAPSIMMSLALLRGHTPPSEDQLVESVEGILERHGVKRAAFFGHSFGSISVAWMARRKP 265          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A7S2RF55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF55_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.480e-39
Identity = 88/236 (37.29%), Postives = 120/236 (50.85%), Query Frame = 1
Query:   97 TFLEGWFLGTPSSELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLGRILEPGHNPDAICMRHTLDPVVPFT-HRPLALYALFGLGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCHGRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVGWMARLRP 801
            TFL+GWFLG  + ++K EN + FLAWAM+ KE   LS GE      ++  +  R    L+PG+NPD  C++ +L+       HRPLA Y    + R    CLL   GF       G   YWYR A  APG   A            P+VFFHG+  G   Y   +  +C GR +++VE P I MSL L      PS  +   +++  + RH ++RA   GHSFG+I   WM +  P
Sbjct:   73 TFLQGWFLGARTEDVKRENAMEFLAWAMFNKEPETLSVGERGAAARVISSLRIRYDIHLQPGYNPDVKCIKFSLEQASQHVVHRPLAFYVAVAVARILCHCLLFQAGFIPYHE--GPIAYWYRPASRAPGLPQAL-----------PLVFFHGICPGFFAYIAMLRHLCQGRAALLVEMPHIGMSLSL----RVPSRKETVSAVKRALARHRVERACVCGHSFGTICAAWMVQETP 291          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A6U4GNQ7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GNQ7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.820e-31
Identity = 94/264 (35.61%), Postives = 136/264 (51.52%), Query Frame = 1
Query:    7 YPIDGKRLMFKVLDMVDWLSQHDDISTDFTTFLEGWFLGTPSSELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNM-VKVVE--ERLGRILEPGHNPDAIC-MRHTLDPVVPFTHRPLALYALFGLGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCHGRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVGWM 786
            YP+  + LM +VL +V  L   DD    F  FL  WF+  P  +L   +   F +WA+YA     LSK E   +  + V+ V   +  G+ L+ G   + I  +  TL P+    HRPL  YA+  L       +L V GFRR         YW+R+A  A G+   +    G   GR P+V FHG+  G+  Y   + + C GRT+++ E P I+M+L L     PPS   +  ++EGI +RH ++RA F GHSFGS+P+ WM
Sbjct:   56 YPMPKRELMHRVLGLVKDLG--DDYP--FDRFLSDWFIRAPYEKLTVGSARSFFSWALYAHREEDLSKAESAELDELTVEAVAFAKAQGKPLKEGPKTEGIDHVDFTLRPLES-VHRPLLWYAIVALKAKLSGAILLVNGFRR--FEYDGLVYWHRDAADA-GRPALDLEHPG--HGRLPLVVFHGISSGIFLYLPMLLRYCGGRTAMIFEQPHISMALDL----APPSRDAVVAAVEGICRRHRVRRAAFLGHSFGSVPLAWM 305          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A7S0DR77_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DR77_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 2.940e-26
Identity = 75/253 (29.64%), Postives = 117/253 (46.25%), Query Frame = 1
Query:   49 MVDWLSQHDDISTDFTTFLEGWFLGTPSSELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLGRILEPGHNPDAICMRHTLDPVVPFTHRPLALYALFGLGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCHGRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRA--TFFGHSFGSIPVGWMARLRP 801
            M +W +    I +D  T   GWF      E++ EN+V FL WA++      L+K +   V   +  +EE +G    PGHNP   CMR+++DPV    +RPL  Y            ++   G++ + A  G   YW+R               G   +   P+VF HG+G G++     + K+   R   +VE P + + L    G TPP+  +   +IE ++  HG   A   F GHS+G+  + W+ R RP
Sbjct:   94 MEEWRNVIKHIGSDVLT---GWFFQAKLKEIRRENLVEFLTWALFNTTPPRLTKEQAIEVCEEMVKIEEAIGYNFAPGHNPHVKCMRNSIDPVKT-EYRPLLFYFAIWFQNIFSYGVIRALGYKCKQA--GPTRYWWRP--------------GSPDSKAQPVVFLHGIGVGISQNLPLLRKLHKDREVFLVELPWVCLRL----GETPPAPDEFVRTIELMLSNHGRWNAGACFIGHSYGTCAIAWVLRTRP 322          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A7S2NA63_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2NA63_9DINO)

HSP 1 Score: 112 bits (280), Expect = 4.190e-25
Identity = 75/245 (30.61%), Postives = 117/245 (47.76%), Query Frame = 1
Query:  109 GWFLGTPS----------SELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLGRILEPGHNPDAICMRHTLDPVVPFTHRPLALYALFG-LGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCH---GRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVGWMARLRP 801
            GWFL   S          +EL+  N+  ++AWA +     +  +     + ++   +   +   LEPG+N DAICMR T+DP+ P +HRPL  YA+   +    +   L+  GFR+  +  GT  YW+R      G    + A   C     PIVF HG+G  +  Y   + ++      R+  ++  P I+M +        PS T++   +  ++   G K A F GHSFGS+P+ WMAR  P
Sbjct:   20 GWFLKRGSRQDRWPMSRVAELRRGNIKEWVAWAFFNCSTEMAPRARFVELEDITDEIIRWMEVHLEPGYNDDAICMRLTMDPI-PSSHRPLVYYAVTQTIFSQVINIQLHGLGFRQHWS--GTLLYWHRPGVPPEGADARSHAAESCP---PPIVFCHGIGVNVLPYRPLLNEMLEKASDRSFFLISLPHISMRIK----EEVPSSTEMVACLSDMLSSWGFKSAHFVGHSFGSLPLAWMARKAP 254          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A482SC70_9ARCH (Alpha/beta hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SC70_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 7.740e-24
Identity = 74/243 (30.45%), Postives = 115/243 (47.33%), Query Frame = 1
Query:   91 FTTFLEGWFLGTPSSELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLG--RILEPGHNPDAICMRHTLDPVVPFTHRPLALYALFGLGRFAVRCL-LNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCHGRTSIVVESPSI---TMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVGWMARLRP 801
            F  + EG+FLG+  S++ ++N++ FLAWA++ K    L   E       V  + E     R L+PG+NP+      TL PV P+ HRPL LY + GL       L   + GF+      G   YW ++               G  T   P++FFHG+  G + Y + I  +   RT I+V+  ++   +M  ++      P+     E I  I++RH I + +  GHSFG+I  GW+    P
Sbjct:   87 FEQYYEGFFLGSKFSDIYYDNILSFLAWAVFGKHAHDLHPREAKATRKFVDHLMENYECFRNLQPGYNPNVQHCNFTLQPV-PYVHRPLLLYVINGLNEVLCNALCFRLHGFQ--FLEVGGVTYWIKQ---------------GAKTDLPPMMFFHGISPGWSFYVMMIRYMATERTIIMVDLEAVKIKSMCFYM------PTVDHFTEHILHILRRHHIDKVSLVGHSFGTIVAGWVVSKYP 305          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A7S4S8M1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S8M1_9DINO)

HSP 1 Score: 103 bits (257), Expect = 2.330e-21
Identity = 71/247 (28.74%), Postives = 116/247 (46.96%), Query Frame = 1
Query:  103 LEGWFLG----------TPSSELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLGRILEPGHNPDAICMRHTLDPVVPFTHRPLALYALFG-LGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCH---GRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVGWMARLRP 801
            + GWFL           +  S+L+  N+  ++AWA +   +  + +     +  +   +   +   LEPG+N +A CMR T+DP+ P  HRPL  YA+   +    +   L   GF +  +  GT  YW+R       +  + G+ G  ST   PIVF HG+G  +  Y   + ++      R+  ++  P I+M +        PS T++   +  ++   G   A F GHSFGS+P+ WMAR  P
Sbjct:  287 VSGWFLRRHRSRDRWPMSQVSQLRRGNIKEWVAWAFFNCGLERVPQARCAEMEELTDEIVRWMEVHLEPGYNHEAACMRLTMDPI-PSAHRPLVYYAVTQTIFSQVINIQLRGLGFSQHWS--GTLLYWHRPGVP---QRSSEGSTGSTSTCPPPIVFCHGIGVNVLPYRPLLNEMLDRAADRSFFLISLPHISMRIK----EEVPSSTEMVACLSDMLSSWGFTSAHFIGHSFGSLPLAWMARKAP 523          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A813HYE9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HYE9_POLGL)

HSP 1 Score: 102 bits (253), Expect = 7.400e-21
Identity = 75/246 (30.49%), Postives = 111/246 (45.12%), Query Frame = 1
Query:  109 GWFLGTPSS----------ELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLGRILEPGHNPDAICMRHTLDPVVPFTHRPLALYALF-GLGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAP-GKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCH---GRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVGWMARLRP 801
            GWFL  P            ELK  NV  ++AWA +  +V  + +        +   +   +   LEPG+NP+A+ MR T+DP+ P  HRPL  YA+   +    +   L   GF    +  GT  YW+R     P     A  AR        PIVF HG+G  +  Y   + ++      R+  ++  P I+M +        PS T++   +  ++   G   A F GHSFGS+P+ WMAR  P
Sbjct:  218 GWFLKCPERQERWPISRLRELKRGNVDEWVAWAFFNCQVDEVPESRKAETQELTDEIMRWMEVDLEPGYNPEAVAMRLTMDPI-PSAHRPLIYYAVTQAIFSQIIHFQLTGMGFGPHWS--GTLHYWHRPPTSPPVSDAAATRAR------AAPIVFCHGIGVNVLPYRPFLNEMLERFPDRSFFLISLPHISMRIK----EEVPSNTEMVACLSDMLATWGFPSAHFVGHSFGSLPLAWMARKAP 450          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A7J6NN55_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NN55_PEROL)

HSP 1 Score: 97.8 bits (242), Expect = 3.990e-20
Identity = 87/277 (31.41%), Postives = 126/277 (45.49%), Query Frame = 1
Query:   16 DGKR--LMFKVLDMVDWLSQHDDISTDFTTFLEGWFL-GTPSSELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLGRI----LEPGHNPDAICMRHTLDPVVPFTHRPLALY-ALFGL---GRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCHGRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGI----KRATFFGHSFGSIPVGWMARLRP 801
            DG R  ++ KV +M   L +H +        L+GWF  G    +L+ EN+  F AWA Y K +  L   E    +  V+ V+ER+ R     ++PG   D    R TLDPV+   HRP   Y A+ GL   G   +R L    G+R      G   YWY+ +                  G + +VFFHGLG G+TTY   +     G T  + E P ++M          P+E + AE +E  ++RHG+    +R    GHSFG+  + W+    P
Sbjct:   48 DGHRDYVLEKVTEM---LKRHPE---GLWRLLKGWFEPGVEQEDLRDENISEFFAWAFYYKHLEALDSSE----LQWVETVKERVARDHSFPIKPGRG-DVKINRQTLDPVMA-VHRPFVFYLAIKGLKLLGSIGLRLL----GYRHY--RMGKVTYWYKRSRTE-------------KAGEEALVFFHGLGIGVTTYMPFLPTFTAG-THFLFELPWVSMDPW---AEVIPAE-EYAEGVECALRRHGVPEGHQRLCLAGHSFGTFTIAWLRHYCP 288          
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Match: A0A485K7Q1_9STRA (Aste57867_2467 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7Q1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.690e-18
Identity = 72/243 (29.63%), Postives = 112/243 (46.09%), Query Frame = 1
Query:   88 DFTTFLEGWFLGTPSSELKHENVVVFLAWAMYAKEVAVLSKGEHNNVVNMVKVVEERLGRILEPGHNPDAI-CMRHTLDPVVPFTHRPLALYAL-FGLGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAPGKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIW--KVCH-GRTSIVVESPSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVGWMARLRP 801
            D    +E WF  TP  +L   ++  + ++  Y+KE   +   + + V  +V  + E +G    P  +   I C+RHTLDP    T RP   YA+  G+ + +   LL V GFRR     G   YW++ +  +             ++   P+VF HG+G GL  Y   +W  K  H  R   ++E P I+M         P  +T LA  I  ++  HGI RA + GHS+G+    W+ +  P
Sbjct:  115 DLRAMVEEWFFDTPFDQLTRPDLCAWFSYTFYSKEWQHMHLADRDEVDALVTRLYELVGAAEPPSPSAQPIQCIRHTLDPFHA-TVRPWVAYAVTIGMNQLS-HVLLRVAGFRRMTLARGLH-YWHQPSLDSS------------TSTVSPLVFVHGMGVGLLLYLPLVWQLKAAHPDRPLFLLEMPCISMQWV---EDVPSKDTTLA-GIRRMLADHGIARAHWMGHSYGTAICSWVCQEMP 338          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9870.17831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVU2_ECTSI4.400e-11262.26AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A7S2RF55_9STRA2.480e-3937.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4GNQ7_9STRA1.820e-3135.61Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0DR77_9EUKA2.940e-2629.64Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2NA63_9DINO4.190e-2530.61Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A482SC70_9ARCH7.740e-2430.45Alpha/beta hydrolase n=1 Tax=archaeon TaxID=190666... [more]
A0A7S4S8M1_9DINO2.330e-2128.74Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A813HYE9_POLGL7.400e-2130.49Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7J6NN55_PEROL3.990e-2031.41Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
A0A485K7Q1_9STRA2.690e-1829.63Aste57867_2467 protein n=1 Tax=Aphanomyces stellat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9870contigS-dermatodea_contig9870:5467..7945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score326.2
Seed ortholog evalue1.3e-86
Seed eggNOG ortholog2880.D7FVU2
EggNOG OGs28PIM@1,2QW6Q@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_002150.1
Exons4
Model size801
Cds size771
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9870.17831.1prot_S-dermatodea_contig9870.17831.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9870 5467..7915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.068876-CDS-S-dermatodea_contig9870:5466..56581622925436.068876-CDS-S-dermatodea_contig9870:5466..5658Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9870 5467..5658 -
1694079932.2044804-CDS-S-dermatodea_contig9870:5466..56581694079932.2044804-CDS-S-dermatodea_contig9870:5466..5658Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9870 5467..5658 -
1622925436.0830295-CDS-S-dermatodea_contig9870:6250..65801622925436.0830295-CDS-S-dermatodea_contig9870:6250..6580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9870 6251..6580 -
1694079932.215655-CDS-S-dermatodea_contig9870:6250..65801694079932.215655-CDS-S-dermatodea_contig9870:6250..6580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9870 6251..6580 -
1622925436.0960891-CDS-S-dermatodea_contig9870:7180..72221622925436.0960891-CDS-S-dermatodea_contig9870:7180..7222Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9870 7181..7222 -
1694079932.226216-CDS-S-dermatodea_contig9870:7180..72221694079932.226216-CDS-S-dermatodea_contig9870:7180..7222Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9870 7181..7222 -
1622925436.108326-CDS-S-dermatodea_contig9870:7708..79151622925436.108326-CDS-S-dermatodea_contig9870:7708..7915Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9870 7709..7915 -
1694079932.2356071-CDS-S-dermatodea_contig9870:7708..79151694079932.2356071-CDS-S-dermatodea_contig9870:7708..7915Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9870 7709..7915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.118339-UTR-S-dermatodea_contig9870:7915..79451622925436.118339-UTR-S-dermatodea_contig9870:7915..7945Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9870 7916..7945 -
1694079932.2457576-UTR-S-dermatodea_contig9870:7915..79451694079932.2457576-UTR-S-dermatodea_contig9870:7915..7945Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9870 7916..7945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9870.17831.1

>prot_S-dermatodea_contig9870.17831.1 ID=prot_S-dermatodea_contig9870.17831.1|Name=mRNA_S-dermatodea_contig9870.17831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=257bp
MFKVLDMVDWLSQHDDISTDFTTFLEGWFLGTPSSELKHENVVVFLAWAM
YAKEVAVLSKGEHNNVVNMVKVVEERLGRILEPGHNPDAICMRHTLDPVV
PFTHRPLALYALFGLGRFAVRCLLNVWGFRRRVAPCGTFCYWYREAFVAP
GKGGANGARGGCSTGRDPIVFFHGLGFGLTTYALAIWKVCHGRTSIVVES
PSITMSLHLLRGHTPPSETQLAESIEGIMKRHGIKRATFFGHSFGSIPVG
WMARLRP
back to top

mRNA from alignment at S-dermatodea_contig9870:5467..7945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9870.17831.1 ID=mRNA_S-dermatodea_contig9870.17831.1|Name=mRNA_S-dermatodea_contig9870.17831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2479bp|location=Sequence derived from alignment at S-dermatodea_contig9870:5467..7945- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACAGTACCCCATCGATGGCAAGCGTCTCATGTTCAAGGTCCTCGATAT GGTGGATTGGCTGTCGCAGCACGACGACATCTCGACCGACTTCACCACCT TCTTGGAAGGGTGGTTCCTTGGCACCCCAAGCTCCGAGCTTAAGCACGAA AATGTGGTGGTGTTTCTAGCGTGGGCGATGTACGCCAAGGAGGTCGCGGT GCTATCGAAGGGGGAGCACAATAATGTGGTCAACATGGTATGTTTGCCGG GGCGGTGGGGGAGAGGGAGGGGGGGGGGGGGGCATGATCGGCATGCGTCA TCCGCTTTCGTTTCGTTATCGTAAGGCGCCCTGCCCATAACCAATCAAAT CGGAAGATATACATAAACTCACTTTGTTTCTCCCACCGCCTTTGTTTCTT GTTGCGCGCGCGGGGGGGTGGGGGGTAGCTACGACATCACGTAGACGCGT TTCATGGGTGGGATGCTGTAACGGCGATCGCTGATTTGCAGCCGAACAGG TGTTGGAAATAGTTCTCACGTTGCTGTCACGTGCGCCCAGATACGAAGGT GATCCACCGTCGAGTGCTTCACATTGCGGTCGTTGTATGCGCTCAGAACC TATATGTTTCTAATTGTAGGGCTTCATCTTCTCTCCTTCCCCTTAAGCGT GCCCTTCTTGCGTTCAGCTACGTGCCCCCTTGTACGCATCATGTTCCTTA TCTGAAACGTGTTTCGTTTCCAGGTCAAGGTCGTCGAGGAGCGGCTAGGG CGTATCCTTGAACCGGTGAGCGCTCTGTCTTCTCACAGACACGGAGGCTA TGCTGTCCTGGCATTGCAATAACCTGTTGTGCGTGTGTGTCGGGCGGGGG GGGGGGGGGGGGGGGGGGGGGAGGTTTTTTTGGGCCCCGCCGGGGGAGGG GAAAGGTTGGGGGCCTGGGGGGGGGTGGGGCTTTTTTTTTTAATTTTTCC CAAAAAANNNNNNNNNNTGGGGTGGGGGGGTGTGGGGTGGGGGGGGGGGG GGGGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGTGGGGGGA CGGTGACAGTCTTTTGTGGCCGCGCCGGGGCAGTGGAATCGATTGGGGCC TCGGGAGCGATGTGCGCTTCTTGTATAATTTATCCGCAAAAAAGAGGCTC AGTCGCTAGCCCCGAATACAGCAGCAGTCCCCGATCCTCTAGATCTACCC CACGTTTTGTGACAACATCCAAGGCATTACCATGATACACATGCTTCATT CGCTCGCGCGCAGCAGTATACCCTCGTATTTCGTATTTTCCATCTCCAAA AACCCTGCACTCCATCGTGCCTTCCTTCCCCGCGCCCGCTTCCCAAAACA AACTAAATGCCGCAGGGCCACAACCCGGACGCGATCTGCATGCGCCACAC TCTCGACCCCGTCGTTCCGTTCACGCACCGCCCTCTAGCTCTGTACGCGC TCTTCGGCCTAGGCCGTTTTGCCGTGCGGTGCCTGCTCAACGTGTGGGGG TTTCGGCGACGCGTTGCTCCCTGCGGAACGTTCTGTTACTGGTACCGGGA GGCGTTTGTTGCACCGGGGAAAGGGGGCGCGAACGGCGCGCGGGGCGGGT GTAGCACCGGCCGCGACCCGATCGTGTTTTTTCATGGGTTGGGCTTCGGG TTGACCACGTACGCCCTGGCCATCTGGAAAGTGTGCCACGGCAGGGTGAG TCATGCATGTTGTTGTTGTGGTTGTGTCATGTTCGTCATGACTTGTTGTT CAGTCTCGAACTTGAGATTCGGCTATTACAATACGATAGCGCTTCGGTGA AGACGAGTCGGCGGCTGGCTTCTCGAAGGGACAAGGACGGGTATGCGAAA TCCGGGCGAATCAGCAGCGTGGATACCCCGACACACGTATTGGGTTTTCA AGAGGATTTGTCGCGTGTGCTATGATAGTGTCGTGCCGTTAGGGGAGTGA TATATGGGAGAGACAATATACAAAATCCGCGGGGTGTGCTCGCGATACTG TTATGATGTGTGCAGGAGCCGGAACTCACTCAGAACATGAATGTGCAATC ATAATGGATGCTCCCATCCCATCGCACCACTGTTCCATTTCTCCATCCAT GCTTTTCGATTTGGTCCGAAGGGCAGTAACCAGGCGTCAGCAAGCAGCGC AATCGTCGTTTTCTCCTCGTGTCGCTCGAAAAGGACAGACCAACAGCTGT TGCTGTACAGACCACTGTGTACGGCAGATTTTTCCGAGCGCCGCAACCCC ACGACCCTCCCTCCGCCCCTTTTGACAATCTCGCAAGACGTCGATCGTGG TGGAGTCACCATCGATAACGATGAGCCTCCACCTTCTGCGGGGACACACG CCTCCCTCGGAAACCCAGCTGGCGGAGAGCATCGAGGGCATAATGAAAAG GCACGGGATAAAGAGAGCGACGTTTTTCGGCCACAGCTTCGGGAGCATCC CGGTGGGCTGGATGGCCAGGCTGCGCCCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9870:5467..7945-

>mRNA_S-dermatodea_contig9870.17831.1 ID=mRNA_S-dermatodea_contig9870.17831.1|Name=mRNA_S-dermatodea_contig9870.17831.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at S-dermatodea_contig9870:5467..7945- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCAAGGTCCTCGATATGGTGGATTGGCTGTCGCAGCACGACGACAT
CTCGACCGACTTCACCACCTTCTTGGAAGGGTGGTTCCTTGGCACCCCAA
GCTCCGAGCTTAAGCACGAAAATGTGGTGGTGTTTCTAGCGTGGGCGATG
TACGCCAAGGAGGTCGCGGTGCTATCGAAGGGGGAGCACAATAATGTGGT
CAACATGATGTTCAAGGTCCTCGATATGGTGGATTGGCTGTCGCAGCACG
ACGACATCTCGACCGACTTCACCACCTTCTTGGAAGGGTGGTTCCTTGGC
ACCCCAAGCTCCGAGCTTAAGCACGAAAATGTGGTGGTGTTTCTAGCGTG
GGCGATGTACGCCAAGGAGGTCGCGGTGCTATCGAAGGGGGAGCACAATA
ATGTGGTCAACATGGTCAAGGTCGTCGAGGAGCGGCTAGGGCGTATCCTT
GAACCGGTCAAGGTCGTCGAGGAGCGGCTAGGGCGTATCCTTGAACCGGG
CCACAACCCGGACGCGATCTGCATGCGCCACACTCTCGACCCCGTCGTTC
CGTTCACGCACCGCCCTCTAGCTCTGTACGCGCTCTTCGGCCTAGGCCGT
TTTGCCGTGCGGTGCCTGCTCAACGTGTGGGGGTTTCGGCGACGCGTTGC
TCCCTGCGGAACGTTCTGTTACTGGTACCGGGAGGCGTTTGTTGCACCGG
GGAAAGGGGGCGCGAACGGCGCGCGGGGCGGGTGTAGCACCGGCCGCGAC
CCGATCGTGTTTTTTCATGGGTTGGGCTTCGGGTTGACCACGTACGCCCT
GGCCATCTGGAAAGTGTGCCACGGCAGGGGCCACAACCCGGACGCGATCT
GCATGCGCCACACTCTCGACCCCGTCGTTCCGTTCACGCACCGCCCTCTA
GCTCTGTACGCGCTCTTCGGCCTAGGCCGTTTTGCCGTGCGGTGCCTGCT
CAACGTGTGGGGGTTTCGGCGACGCGTTGCTCCCTGCGGAACGTTCTGTT
ACTGGTACCGGGAGGCGTTTGTTGCACCGGGGAAAGGGGGCGCGAACGGC
GCGCGGGGCGGGTGTAGCACCGGCCGCGACCCGATCGTGTTTTTTCATGG
GTTGGGCTTCGGGTTGACCACGTACGCCCTGGCCATCTGGAAAGTGTGCC
ACGGCAGGACGTCGATCGTGGTGGAGTCACCATCGATAACGATGAGCCTC
CACCTTCTGCGGGGACACACGCCTCCCTCGGAAACCCAGCTGGCGGAGAG
CATCGAGGGCATAATGAAAAGGCACGGGATAAAGAGAGCGACGTTTTTCG
GCCACAGCTTCGGGAGCATCCCGGTGGGCTGGATGGCCAGGCTGCGCCCG
ACGTCGATCGTGGTGGAGTCACCATCGATAACGATGAGCCTCCACCTTCT
GCGGGGACACACGCCTCCCTCGGAAACCCAGCTGGCGGAGAGCATCGAGG
GCATAATGAAAAGGCACGGGATAAAGAGAGCGACGTTTTTCGGCCACAGC
TTCGGGAGCATCCCGGTGGGCTGGATGGCCAGGCTGCGCCCG
back to top