mRNA_S-dermatodea_contig9869.17830.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9869.17830.1
Unique NamemRNA_S-dermatodea_contig9869.17830.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9869.17830.1 vs. uniprot
Match: A0A6H5KEL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL6_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.690e-32
Identity = 64/105 (60.95%), Postives = 79/105 (75.24%), Query Frame = 2 
Query:    2 LALQDVKDGFSGLGPISNERDRVTLVRLYLLGLSYAMGVVPKGENPVGKPKAQVLRDYAEAQRKITALETVVEELKHRDAPAAQPAERETPVAPTAAGGCSCVIM 316
            LALQDVKDGF GLGPIS+E DRVTLVRLYLLGLSYAMG+VPKG+  VGKPK Q+++DY EAQ+++  LE  +E LK+R     + A R   + P  + GC CV+M
Sbjct: 1007 LALQDVKDGFGGLGPISDENDRVTLVRLYLLGLSYAMGIVPKGKEAVGKPKFQIIKDYEEAQKRVGDLEREMEGLKNRVTAQPEEAPRAATLPPPPSAGCGCVVM 1111
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BLAST of mRNA_S-dermatodea_contig9869.17830.1 vs. uniprot
Match: D7G1T1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T1_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.080e-17
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 2 
Query:    2 LALQDVKDGFSGLGPISNERDRVTLVRLYLLGLSYAMGVVPKGENPVGKPKAQVLRDYAEAQRKITALETVVEELKHRDA 241
            LALQDVKDGF GLGPIS+E DRVTLVRLYLLGLSYAMG+VPKG+  VG      LR  A+A +     +  +EE + R+A
Sbjct:  972 LALQDVKDGFGGLGPISDENDRVTLVRLYLLGLSYAMGIVPKGKEAVG------LRRGAKAGQCFRERDGGLEEPRDREA 1045
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9869.17830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEL6_9PHAE4.690e-3260.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T1_ECTSI3.080e-1761.25Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9869contigS-dermatodea_contig9869:6020..8196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9869.17830.1prot_S-dermatodea_contig9869.17830.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9869 6115..8087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925435.9844477-UTR-S-dermatodea_contig9869:6019..61141622925435.9844477-UTR-S-dermatodea_contig9869:6019..6114Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9869 6020..6114 -
1694079932.160766-UTR-S-dermatodea_contig9869:6019..61141694079932.160766-UTR-S-dermatodea_contig9869:6019..6114Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9869 6020..6114 -
1622925436.027727-UTR-S-dermatodea_contig9869:8087..81961622925436.027727-UTR-S-dermatodea_contig9869:8087..8196Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9869 8088..8196 -
1694079932.192738-UTR-S-dermatodea_contig9869:8087..81961694079932.192738-UTR-S-dermatodea_contig9869:8087..8196Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9869 8088..8196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.000191-CDS-S-dermatodea_contig9869:6114..62901622925436.000191-CDS-S-dermatodea_contig9869:6114..6290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9869 6115..6290 -
1694079932.1723604-CDS-S-dermatodea_contig9869:6114..62901694079932.1723604-CDS-S-dermatodea_contig9869:6114..6290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9869 6115..6290 -
1622925436.0102487-CDS-S-dermatodea_contig9869:8053..80871622925436.0102487-CDS-S-dermatodea_contig9869:8053..8087Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9869 8054..8087 -
1694079932.181599-CDS-S-dermatodea_contig9869:8053..80871694079932.181599-CDS-S-dermatodea_contig9869:8053..8087Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9869 8054..8087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9869.17830.1

>prot_S-dermatodea_contig9869.17830.1 ID=prot_S-dermatodea_contig9869.17830.1|Name=mRNA_S-dermatodea_contig9869.17830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
MGVVPKGENPVGKPKAQVLRDYAEAQRKITALETVVEELKHRDAPAAQPA
ERETPVAPTAAGGCSCVIM*
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mRNA from alignment at S-dermatodea_contig9869:6020..8196-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9869.17830.1 ID=mRNA_S-dermatodea_contig9869.17830.1|Name=mRNA_S-dermatodea_contig9869.17830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2177bp|location=Sequence derived from alignment at S-dermatodea_contig9869:6020..8196- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGGCGCTGCAGGATGTTAAGGACGGGTTTTCGGGCCTCGGTCCCATCT
CGAACGAGCGCGACAGGGTCACCCTCGTCCGCCTGTATTTGCTCGGCCTG
TCGTACGCCATGGGGGTCGTGCCTAAGGGGGAGAACCCCGTCGGTGAGAC
TTTGTGGTGGCTTTTGCCCACGCGCGTGCTTGCGTTCGTGCTTGGTCTCT
AGTGGTGGAATTCTTGAAAAACAACTCCATTTTATGTTTTTGCTTTTTGT
ACGATACGTTTAGTTGCTGGGGGGGGTCAATTATTGTACCGGCGTCTGTG
ATATTTGCCTTCAAGCTTTTTTGTTTTTTTTTTTGGGAGGTTTTCGAGGG
GGGGGATATGTTGACTGATTAGTGATGGTGAAACACGGCAAAGCGATGGT
GCAGTGGAATGAACAATACATGATGTTGAACGCCTCGTGATCGCGCGATA
AAAGAGAAAATACTTGCTTTTGCTCGGGTGCTTTTTGCTTTTGTTGAGGC
CACACAACCCGTGTGTGCCATTTGTTCCTGCCAGGTTTGGTCCTGAACAG
CGAGGCGTTTTAAAATACACAATCGGCACTGCTGTTTACTGTATCGTAAG
GGCGCGGATGCGTGTTGTACAAATGCATTAACGGGGTACGGTGTCTGCAG
AAGGCCCTATATGTACACATCGCATGCGTGTCTCCCGTGGGCGGTATCAG
ACGTACACGGGAGGGGGCGGCCGGCCCAGTGGTACGGTAGTCAGCGGTCG
TGCGTTGATAAAGCGATGGCTCGAGCGCAAAGCCGCAGAATCGACGGGCG
GGGCGTGGCATGGCATGGCATGTCATGTCATGTCATGTCATGACATGATA
TTACATGACAGCAGGACGCAACGCGGCAACACTCAACCGGGACTCTGAAC
CCTTTTGGCGCTCAGCACTCTTTTCTTTTTCTACCGGCCCATCCCGTCCT
CACCTTATTTCACTTCGAACAGTAGTGCCACCGAGCGGAAACTATAATTC
ACCCCGTCCATTGTTCGAGTCCGAGTCCTCTTCTAGCGTTTTTCTTTATC
TTGGGTACTATTTCTTCTTTGTTGTACCATAGTAGAATATGTACCAAGGA
CGGTACGGTGTATAGTAGAAGTAGAGCTCTGATTAAAACGGAGGTACACA
GTAATCAAGTAATCAGGACCAAATCTCATGACCATGAAATACCCAACTGT
TCCGACCATGAATACCCAAACAACCAAAAATCTCATGGAAACACAAAAGG
ACACGAGATTTGGCCATACGTAAGAACAAAAATCGACCTTGAAATCTCGA
TAATTGCAGCCTATTTTGATTTTTCTAGGTTAAAATTTGTGGCAAATTTG
GACCTGAAAACTATGCCCCCCCCGGAATAGTAATTTTTCTCCTTGACTCC
TTGCGTGTCTGACCACAAGTCGGATAGGTCGGATTAAGCCGATCGGCTAT
ACGTGTGCAAATCAAATACAAATTACGCAATGGCGGTCGGAAAATGCCAT
TGTAGCCCTACCGCGCTTGGCTACCATGCACACGGTGGTAGATCGATCGA
TCCTTCGCGTGTATGATAGCCGTCTCCGCGATACCTGAAGCGATGTGGCG
ACATTCGGCAACCAGCCAGCTCAAGCAAAGCCCCAAAGGGGTTATTTATA
ACACTGTAGCGGGAACTTCATCGTTCTGACGGATGGATTGGATCTGCTTG
TCGTGCCTGCGTGCCTGCGCCCCTCGACTTACGCTTATTTTACCCTTTCC
GAAAACAAACACGAAAAAAAAAAAAAAAACAGGCAAGCCCCACCCCCNNN
NNNNNNNATGAAGTGCAAATGATTGAGATCACTGGATACCAGCAACCAAC
AATTAACCATAATTTAACACTTACAAAAAAAAAAAAAAAAAAAAAAAAAA
AAACAGGCAAGCCGAAGGCCCAGGTGCTGAGAGACTACGCCGAGGCCCAG
AGGAAGATCACCGCGCTGGAGACGGTGGTCGAGGAGCTCAAGCACCGCGA
TGCACCGGCCGCCCAGCCGGCAGAGAGGGAAACGCCCGTCGCCCCTACTG
CGGCCGGTGGCTGCAGCTGCGTTATAATGTAATTGGATGCTTCCTGACCC
ATGCTTGGGACTGTTTCATACCGACACCACACAACTCGTTCTTTTGGGAT
ACTTGGGGAATGAACGACGCATGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9869:6020..8196-

>mRNA_S-dermatodea_contig9869.17830.1 ID=mRNA_S-dermatodea_contig9869.17830.1|Name=mRNA_S-dermatodea_contig9869.17830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig9869:6020..8196- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGTCGTGCCTAAGGGGGAGAACCCCGTCGATGGGGGTCGTGCCTA
AGGGGGAGAACCCCGTCGGCAAGCCGAAGGCCCAGGTGCTGAGAGACTAC
GCCGAGGCCCAGAGGAAGATCACCGCGCTGGAGACGGTGGTCGAGGAGCT
CAAGCACCGCGATGCACCGGCCGCCCAGCCGGCAGAGAGGGAAACGCCCG
TCGCCCCTACTGCGGCCGGTGGCTGCAGCTGCGTTATAATGTAAGCAAGC
CGAAGGCCCAGGTGCTGAGAGACTACGCCGAGGCCCAGAGGAAGATCACC
GCGCTGGAGACGGTGGTCGAGGAGCTCAAGCACCGCGATGCACCGGCCGC
CCAGCCGGCAGAGAGGGAAACGCCCGTCGCCCCTACTGCGGCCGGTGGCT
GCAGCTGCGTTATAATGTAA
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