mRNA_S-dermatodea_contig9867.17829.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9867.17829.1
Unique NamemRNA_S-dermatodea_contig9867.17829.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: D7G3C0_ECTSI (Sorting and Assembly Machinery 50kDa protein (N-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C0_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 1.290e-99
Identity = 153/192 (79.69%), Postives = 164/192 (85.42%), Query Frame = 1
Query:  211 GLVGDATFGKGTFELQKHFPLAMLLYGP-VESPISLSLCASGGAIRPLGPSKRTLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPLKDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSFE 783
            GL+GD +F KG  E+Q+H PL  +  GP   SP++LSLCASGGAIRP GPSKRT FSDRFNLGGPMTLRGFPFYG GPR+PKEEGGC GGDALGGDI+YTASASLGFP    AMATAGWRGYLF+NLGNLTTWDTPLK Y RDTRVSVGVAAAWNFLGVGRLEINYA VLR+SP DL  ER L FGFGVSFE
Sbjct:  260 GLMGDTSFAKGMLEMQRHIPLFGVELGPETYSPVTLSLCASGGAIRPFGPSKRTFFSDRFNLGGPMTLRGFPFYGAGPRSPKEEGGCEGGDALGGDIRYTASASLGFPFPVPAMATAGWRGYLFTNLGNLTTWDTPLKQYGRDTRVSVGVAAAWNFLGVGRLEINYAHVLRRSPRDLHRERPLQFGFGVSFE 451          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A835YSQ9_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ9_9STRA)

HSP 1 Score: 237 bits (605), Expect = 7.230e-69
Identity = 133/267 (49.81%), Postives = 168/267 (62.92%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQAT-AEGAGLVGDATFGKGTFELQKHFP---LAMLLYGPVESPISLSLCASGGAIRPLGPS--KRTLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPLKDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSFE 783
            HAL  EM  RD+MPRR+P VPYA+AASL V+ +++PS++SS++Y +T D RD+ +VPT G Y QA+  E A   GD +F KG   LQ+H     LA +       PISL +C   GA+RP G    K    SDR+ LGGPM LRGF   G GPRAPKEEGG   GD+LGGDI+ TASA+L FP     +A  G R  LF+N GNLTTW TPL    RD R +VGV    +  G+GR+E  ++ VLR++P D    R   FG G+ FE
Sbjct:  189 HALTGEMTWRDVMPRRHPTVPYAHAASLSVLRESRPSVRSSMRYAYTQDGRDSPYVPTVGPYLQASHREAAVPPGDVSFLKGHIALQQHMSFVDLAPIFLSVNPLPISLGVCLGLGAVRPFGSDAGKPARISDRYFLGGPMMLRGFKVAGTGPRAPKEEGGNLEGDSLGGDIRATASAALSFPFPVSPLAQWGVRLQLFANAGNLTTWQTPLDRMHRDARAAVGVGIVSSLFGMGRVEATWSHVLRKAPHD--QTRRAQFGMGLVFE 453          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A484DQ43_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQ43_BRELC)

HSP 1 Score: 216 bits (549), Expect = 1.390e-60
Identity = 120/269 (44.61%), Postives = 163/269 (60.59%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGP--SKRTLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
            H L++ +G RD++PRR+  +P AY AS  ++A+A PS K+SLKY FTDD RDN   PTAG  F+ + E AGLV D  F K   E QKH  +  L +G P+   ++ S+    G ++  G   ++    SDRF LGGPM+LRGF + GIGPR+  E+GG   GDALGGD+ Y  +AS+GFP     ++  G RG LF+N GNLTTWD  L      K+   DTRVS+G+   W    +GRLE NY+ +L+    D    +   FG G++F
Sbjct:  198 HDLSINIGWRDLLPRRDSKIPTAYRASPSILAEAMPSTKTSLKYVFTDDDRDNIVYPTAGGLFKYSTEIAGLVSDVKFVKAEVEGQKHVAIGPLFFGLPI---LNFSISYRLGTVKSYGSEHNRPARISDRFFLGGPMSLRGFNYKGIGPRSSPEDGGVAQGDALGGDVSYHGTASVGFPVPLPLLSALGLRGQLFANAGNLTTWDRVLDENQWMKNLVDDTRVSIGMGLVWG-TRIGRLEANYSWILKSLTHD--NIKRAQFGLGMTF 460          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A8K1CC02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC02_PYTOL)

HSP 1 Score: 216 bits (549), Expect = 1.390e-60
Identity = 120/269 (44.61%), Postives = 161/269 (59.85%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
            H L++ +G RDI+PRR+  +P A+ AS  ++A+A PS K+SLKY F DD R+N  VPTAG  FQ + E AG+ GD  F K     QKHF L  +++G P+   ++ S     GA+   G  +   T  SDRF LGGP+++RGF   GIGPRA   +GG   GD+LGGD+ YTA+AS+GFP     MA  G RG++F+N+GNLTTW   L      K    DTR SVGV   W    +GR+E NY+ +L+    D    +    G GV+F
Sbjct:  198 HELSLNLGWRDIIPRRDSRIPTAFRASPSIIAEALPSTKTSLKYVFRDDTRNNLVVPTAGGLFQYSTEVAGIFGDVRFIKAEVAAQKHFGLGPIVFGHPI---LNFSFATQFGAVNAYGVDEHRPTRLSDRFFLGGPLSVRGFNHKGIGPRASPNDGGSKWGDSLGGDVSYTATASMGFPLPVPLMAMLGMRGHVFANVGNLTTWSRLLDEKKWMKHLVDDTRASVGVGIVWG-TSIGRIEANYSWILKAHEHD--NIKRAQIGLGVTF 460          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A2D4CD39_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD39_PYTIN)

HSP 1 Score: 218 bits (556), Expect = 3.410e-59
Identity = 124/269 (46.10%), Postives = 161/269 (59.85%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
            H L++ +G RDI+PRR+  +P A+ AS  V+A+A PS K+S+KY F DD R+N+ +PT G  FQ + E AGLVGD  F K     QKH  +  +L+G P+   +S S     GAI+  G  +   T  SDRF LGGP+++RGF   GIGPRA   +GG   GDALGGD+ YTASAS+GFP     MA  G RG +F+N GNLTTW   L      K    DTRVSVGV   W    +GR+E NY+ VL+    D    +    G G++F
Sbjct:  178 HELSLNLGWRDIIPRRDAKIPTAFRASPSVIAEAMPSTKASIKYVFKDDTRNNAVLPTDGGLFQYSTEIAGLVGDVRFVKAEVAAQKHIGIGPVLFGHPI---LSFSFATHLGAIKSYGSDEHRPTRLSDRFFLGGPLSVRGFHHKGIGPRASPNDGGVKSGDALGGDVSYTASASMGFPLPVPLMAMLGMRGQIFANAGNLTTWSRLLNEKKWMKHLVDDTRVSVGVGIVWG-TSIGRIEANYSWVLKSHQHD--NVKRSQIGLGMTF 440          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A0P1B4D7_PLAHL (Sorting and assembly machinery component 50 putativ n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4D7_PLAHL)

HSP 1 Score: 210 bits (534), Expect = 2.010e-58
Identity = 120/272 (44.12%), Postives = 155/272 (56.99%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSFE*C 789
            H L+  +G RD++PRR+P +P AY AS  ++A+A PS K+S+KY FTDD RDN   PT G  F+ + E AGL GD  F K   E QKHF L  L  G P+   ++ S     G ++  G  +      SDRF LGGPM LRGF   GIGPRA   +GG   GDALGGD+ Y  +AS+GFP     +A  G RG  F+N GNLTTWD  L      K+   DTRVS+G+   W    +GRLE NY+ +L+     L  + +     G+S   C
Sbjct:  196 HDLSFNVGWRDLLPRRDPKIPTAYRASPSILAEAMPSTKTSVKYVFTDDNRDNIVYPTTGGLFKYSTEIAGLAGDVKFVKAEVEGQKHFALGPLFLGFPL---LNFSFSGHMGTVKSYGSEQHRPVRISDRFFLGGPMNLRGFNHKGIGPRASPLDGGVAQGDALGGDVSYHGTASVGFPVMLPLLAALGLRGQFFANAGNLTTWDRVLDEKKWMKNLVDDTRVSIGIGLVWG-TRIGRLEANYSWILK----SLNHDNIKRAQLGLSMTFC 459          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A2D4BF57_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF57_PYTIN)

HSP 1 Score: 216 bits (551), Expect = 5.540e-58
Identity = 123/269 (45.72%), Postives = 161/269 (59.85%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
            H L++ +G RDI+PRR+  +P A+ AS  V+A+A PS K+S+KY F DD R+N+ +PT G  FQ + E AGLVGD  F K     QKH  +  +L+G P+   +S S     GAI+  G  +   T  SDRF LGGP+++RGF   GIGPRA   +GG   GDALGGD+ YTASAS+GFP     MA  G RG +F+N GNLTTW   L      K    DTRVSVGV   W    +GR+E +Y+ VL+    D    +    G G++F
Sbjct:  156 HELSLNLGWRDIIPRRDAKIPTAFRASPSVIAEAMPSTKASIKYVFKDDTRNNAVLPTDGGLFQYSTEIAGLVGDVRFVKAEVAAQKHIGIGPVLFGHPI---LSFSFATHLGAIKSYGSDEHRPTRLSDRFFLGGPLSVRGFHHKGIGPRASPNDGGVKSGDALGGDVSYTASASMGFPLPVPLMAMLGMRGQIFANAGNLTTWSRLLNEKKWMKHLVDDTRVSVGVGIVWG-TSIGRIEASYSWVLKSHQHD--NVKRSQIGLGMTF 418          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: M4BJR2_HYAAE (Omp85 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJR2_HYAAE)

HSP 1 Score: 209 bits (531), Expect = 8.330e-58
Identity = 120/269 (44.61%), Postives = 158/269 (58.74%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
            H L++ +G RD++PRR+  +P AY AS  ++A+A PS K+S+KY FTDD RDN   P AG  F+ T E AGLVGD  F K   E QKH      ++G P+   ++ SL    G ++  G  +      SDRF LGGPM +RGF   GIGPRA   +GG   GDALGGD+ Y  +AS+GFP      A  G RG +F+N+GNLTTWD  L      K+ A DTRVSVG+   W    +GRLE NY+ +L+    D    +    G G++F
Sbjct:  214 HELSLNVGWRDLLPRRDSKIPTAYRASPSILAEAMPSTKTSVKYVFTDDNRDNIVYPVAGGLFKYTTEIAGLVGDVKFVKAEVEGQKHMAAGPEMFGFPI---LNFSLSYHLGTVKSYGSDQNRPARISDRFFLGGPMNVRGFNHKGIGPRASPLDGGVVQGDALGGDVSYRGTASMGFPVPLPLFAALGLRGQVFANVGNLTTWDRLLDEKKWMKNLADDTRVSVGLGLVWG-TRIGRLEANYSWILKAHAHD--NIKRAQLGLGLTF 476          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: H3GJ66_PHYRM (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GJ66_PHYRM)

HSP 1 Score: 208 bits (529), Expect = 1.230e-57
Identity = 121/269 (44.98%), Postives = 157/269 (58.36%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
            H L++ +G RD++PRR+  +P AY AS  ++A+A PS K+S+KY FTDD+R+N   PTAG  F+ T E AGLVGD  F K   E QKH  L  +L G P+   ++ SL    G ++  G  +      SDRF LGGPM +RGF   GIGPRA   +GG   GDALGGD+ Y  +ASLGFP         G RG  F+N GNLTTWD  L      K+   DTRVSVG+   W    +GRLE NY+ +L+    D    +    G G++F
Sbjct:  202 HDLSLNVGWRDLLPRRDSKIPTAYRASPSILAEAMPSTKTSVKYVFTDDKRNNVVYPTAGGLFKYTTEIAGLVGDVKFVKAEVEGQKHVALGPVLNGFPI---LNFSLSYHLGTVKSYGSEQNRPARISDRFFLGGPMNVRGFNHKGIGPRASPLDGGVAQGDALGGDVSYNGTASLGFPVPLPLFVALGLRGQFFANAGNLTTWDRLLDEKKWLKNLTDDTRVSVGMGLVWG-TRIGRLEANYSWILKAHAHD--NIKRAQLGLGMTF 464          
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A1V9ZWW2_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWW2_9STRA)

HSP 1 Score: 200 bits (509), Expect = 6.840e-55
Identity = 118/270 (43.70%), Postives = 163/270 (60.37%), Query Frame = 1
Query:    1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYGPVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGV--GRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
            H LA  +G RDI+P RN  +P  YAAS  ++A+A+PS KSS+KY + DDQR++S +PT+G   + + E AGL GD  F KG  E+Q+H+P+  + Y      ++LSL +  GA++  G  K+     SDRF LGGP+TLRGF   G+GPRA  ++GG   GDALGG+I Y+A ASLGFP     +A  G RG++F N G+L  WD  L      K+  +D+R + GV      +G   GR E NY+ VL+    D R +R    G G+ F
Sbjct:  187 HELAFNLGWRDIVPIRNKKIPSTYAASPSIMAEAEPSTKSSVKYVYNDDQRNDSALPTSGRLLRTSLEVAGLWGDVNFVKGEVEVQRHYPIGPIAYN--HPFLNLSLSSRLGAVKSYGSDKQQPARISDRFFLGGPLTLRGFNHKGVGPRANPDDGGVATGDALGGEIFYSACASLGFPFPVPLLALLGVRGHVFCNAGSLFGWDRVLDEQNWMKNLLQDSRAAAGVGIV---IGTRFGRFEANYSWVLKSLAGD-RVKRA-QLGLGMHF 449          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C0_ECTSI1.290e-9979.69Sorting and Assembly Machinery 50kDa protein (N-te... [more]
A0A835YSQ9_9STRA7.230e-6949.81Sorting and assembly machinery component 50 n=1 Ta... [more]
A0A484DQ43_BRELC1.390e-6044.61Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A8K1CC02_PYTOL1.390e-6044.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CD39_PYTIN3.410e-5946.10Sorting and assembly machinery component 50 n=1 Ta... [more]
A0A0P1B4D7_PLAHL2.010e-5844.12Sorting and assembly machinery component 50 putati... [more]
A0A2D4BF57_PYTIN5.540e-5845.72Sorting and assembly machinery component 50 n=1 Ta... [more]
M4BJR2_HYAAE8.330e-5844.61Omp85 domain-containing protein n=1 Tax=Hyaloperon... [more]
H3GJ66_PHYRM1.230e-5744.98Uncharacterized protein n=22 Tax=Phytophthora TaxI... [more]
A0A1V9ZWW2_9STRA6.840e-5543.70Sorting and assembly machinery component 50 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9867contigS-dermatodea_contig9867:1770..6393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue5.6e-85
Seed eggNOG ortholog2880.D7G3C0
Preferred nameSAM50
KEGG koko:K07277
KEGG TC1.B.33
GOsGO:0001401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019867,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045040,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805
EggNOG free text desc.sorting and assembly machinery component
EggNOG OGsCOG4775@1,KOG2602@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons5
Model size1580
Cds size768
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925435.8841205-UTR-S-dermatodea_contig9867:1769..25631622925435.8841205-UTR-S-dermatodea_contig9867:1769..2563Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9867 1770..2563 -
1694079932.0800061-UTR-S-dermatodea_contig9867:1769..25631694079932.0800061-UTR-S-dermatodea_contig9867:1769..2563Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9867 1770..2563 -
1622925435.9523036-UTR-S-dermatodea_contig9867:6375..63931622925435.9523036-UTR-S-dermatodea_contig9867:6375..6393Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9867 6376..6393 -
1694079932.1502948-UTR-S-dermatodea_contig9867:6375..63931694079932.1502948-UTR-S-dermatodea_contig9867:6375..6393Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9867 6376..6393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925435.8948114-CDS-S-dermatodea_contig9867:2563..26701622925435.8948114-CDS-S-dermatodea_contig9867:2563..2670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 2564..2670 -
1694079932.100634-CDS-S-dermatodea_contig9867:2563..26701694079932.100634-CDS-S-dermatodea_contig9867:2563..2670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 2564..2670 -
1622925435.905224-CDS-S-dermatodea_contig9867:3855..40261622925435.905224-CDS-S-dermatodea_contig9867:3855..4026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 3856..4026 -
1694079932.110264-CDS-S-dermatodea_contig9867:3855..40261694079932.110264-CDS-S-dermatodea_contig9867:3855..4026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 3856..4026 -
1622925435.9154418-CDS-S-dermatodea_contig9867:4810..49741622925435.9154418-CDS-S-dermatodea_contig9867:4810..4974Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 4811..4974 -
1694079932.1220446-CDS-S-dermatodea_contig9867:4810..49741694079932.1220446-CDS-S-dermatodea_contig9867:4810..4974Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 4811..4974 -
1622925435.9264047-CDS-S-dermatodea_contig9867:5430..55631622925435.9264047-CDS-S-dermatodea_contig9867:5430..5563Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 5431..5563 -
1694079932.1317327-CDS-S-dermatodea_contig9867:5430..55631694079932.1317327-CDS-S-dermatodea_contig9867:5430..5563Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 5431..5563 -
1622925435.9415512-CDS-S-dermatodea_contig9867:6182..63751622925435.9415512-CDS-S-dermatodea_contig9867:6182..6375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 6183..6375 -
1694079932.140533-CDS-S-dermatodea_contig9867:6182..63751694079932.140533-CDS-S-dermatodea_contig9867:6182..6375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9867 6183..6375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9867.17829.1prot_S-dermatodea_contig9867.17829.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9867 2564..6375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9867.17829.1

>prot_S-dermatodea_contig9867.17829.1 ID=prot_S-dermatodea_contig9867.17829.1|Name=mRNA_S-dermatodea_contig9867.17829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=256bp
MGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFV
PTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYGPVESPISLS
LCASGGAIRPLGPSKRTLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGC
PGGDALGGDIKYTASASLGFPFPFPAMATAGWRGYLFSNLGNLTTWDTPL
KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGF
GVSFE*
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mRNA from alignment at S-dermatodea_contig9867:1770..6393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9867.17829.1 ID=mRNA_S-dermatodea_contig9867.17829.1|Name=mRNA_S-dermatodea_contig9867.17829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4624bp|location=Sequence derived from alignment at S-dermatodea_contig9867:1770..6393- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCCCTGGCCGTCGAGATGGGCCTCCGCGACATCATGCCCCGGAGGAA CCCGGGAGTCCCCTACGCCTACGCGGCGTCGCTCGGTGTGGTGGCGGACG CGAAACCGTCGATGAAGAGCAGCTTGAAGTACACGTTCACCGACGATCAG CGAGACAACTCGTTCGTGCCGACCGCCGGGTCTTACTTTCAGGCCACCGC GGAGGGGGCGGGTAAGGAATAGGATGCGGGGAGGGCGGCAGCGCAGCAGC CTTGTTCCGCGCTTTTCCGAAAGCGTGTTAGGGCTTGGGGGCGGGGTGGG AAAACAGAGTGTGCCAAACCGGAACGTCGTCCACGCACGGTGGAGTTGAT CTCGGCGACCATCGATCCCCGCACCGTGGCTCAGCATGTCAGGCCGGGTT TTCAACCTTGTCCCTCTCTCTTATTATCTTTGAGGAACGGCGTTCATATA CCGGGCAGGGAGGCACGTTTTCTTGTGGTTTCGAGGGTAGGACCAACCGC GCACCGACTATTTCGGTATATGGTAATACGTGGTGTCGGTCCCGGCCCGC CAGCGAAACGTCGCCAGAACAGCATTGGTGCTGTCCGTCCAAAACGGACA GCGTGACAGCCATTGCATGCTCGAGAAACGCCGGCCAGAACGACTCATCA AGCCCCCGGCCTTGCGGGAGGCAGAACAAACGAAGCCAAGGAATTGCCAT ACAAAACACGGAACCAAATCACCGCCGATTGCAATTGATTCGCTAGTTCG CCACTCCCCCTCCCCTGTCTAGGTTAGTGACCCCGACCACCGTCGTCTCC TCTTTGCGCCCGATCTTTTGACAAATCCAGGGCTGGTGGGAGACGCGACT TTCGGGAAGGGGACGTTCGAGCTCCAAAAGCACTTTCCCCTTGCGATGCT GCTGTACGGCCCGGTCGAGAGTCCCATTTCGCTCAGCCTTTGCGCGTCTG GAGGGGCGATACGGTGAGAGTGGGACGTGTCGCGCTTTCCTCCCCCTGGT GTTTTCGTTTTTGTACGAATGTGTTATTTCGGTCGTCGTTGGTGTAGGTT GTGGTAAGCGGACTCTCGCCTACATCGTTCGCCCACGGTAACTCGCTACA CGCATCTTGAGTATTTTTTTTTAAGCAATGCTGTAGTGAGGAGAACAAAA ATTACCGCCCGAGTAGGGTGTGGGCCCTTTGGCGTGGTTTCTCCCTGAAG GGCAGCTTGGAGCGCTATCATCGTCCATATGTCGAGAGATCCAGCTCGGC ATCCAAATCAAAAACCGACTGCCCTACGATTCGGTATTCCCGCGTTGCCT CCGCAACCACAACGCGACCCTGTTTTCACATCACCCCTCCTCACATACCC CCCCCTACCCCTGCCCCGTGCCTTCATCCCTACCTGTGACTCGCTCCGAA TAACTTACGCGACGCGAAGGCCGCTTGGCCCCTCCAAGCGGACGCTTTTC AGCGACCGGTTCAACCTCGGGGGTCCGATGACGCTTCGCGGCTTTCCCTT TTACGGCATCGGTCCTCGAGCGCCGAAAGAGGAAGGTGGTTGCCCCGGGG GGGATGCTCTGGGCGGGGACATAAAGTACACAGGTGAGGGGGTCGTAGTA AATTGGGCGAGGTGATCCATGTTGTAGCGGAATGCCCATTGTATGATACG ACAAGGAGAGGGAATTGTACATGGCTGAACTTGGAAAAATTGAAGGTTGT GATAGATCTGATTTTGAAGCATGGGACAGTCAGACGAAGACAGCAGCAAT ACTGGGGGATAATAAGTGGGGCCCGAAAAGGCGAGAATTGAAATATTAGT AGATATTATATATAGGAAAAACGTTTTTTGAGCCACCTTTGGCAAAGTAG GAAGGAACGATTGGCCACCGGCGATCGATCCTGTGGGAACAATACTCCGT CCTCCCGAGGACGCGTGGTCAATGGCCTAACAGCTAAGGCATGCAAAACT TGAGTACCCCGCCCCCCCTCGCCGCCCATTGAGATGTTAAGATTTTAATG TTATTTGGAAACGCGGCTCGGCGCAGTAAGCTGACCTGACAGCCATTCTA CAGGTGCCCCGTGTATAATTCGAATGCCCCCAAAACGTCCCCAAGTATTG TCGGTGTGAAACACGGAAACGTTGTATTGAGCAAATAACCCGCAGGCATA ACCCTAGCAGGGGCAAGCATTTTTTAATGTCCAGGCAGGAGAGGGCTGTT GTGAAATATCTCTCCATATTACATACTAGTATTCATCTATGAGATTACCT CTTCAATCGTCTACTGTTAACGCCTACCCTGATCGCTCCTACTAACACTC ACCATCTACCCTCCTGCTCCTCTTGCGCTGGGTTCGCTTCCGCCCCCTGT TTCCGTCTTATTAATAGCCTCGGCGTCGCTAGGGTTTCCATTCCCGTTTC CGGCGATGGCGACGGCGGGGTGGCGTGGGTATCTCTTCAGCAACCTGGGG AACCTGACGACGTGGGACACGCCGTTGAAGGACTATGCCCGTGATACCAG GGTTTCGGTCGGTGTTGCCGCCGCGTGGAATTTCTTGGGTGAGCGCTTTG CGGCTCTGCCGAAGGGCGTGTACTCGAGGCGCTTTGCGTTATGGGGATAT ATACATACATACGCGAGTCGAGCGTTTTAGCGCGTACGACATGTTGCCGG CAGCCCTGGTGATACCGTTAACTCATCGCGTTGATTCTTGACATTTCGGC CGCATAGCGAGGAGCGCGCCAAGCAGTCGTGTGGTGAACCCTCCCCCATG AGAAAGCTGTGGAGAAACGGCGTTGCTGCTCGCGAATATCCCTGCCGTTT GGAGGGCAAGCGTCACGCGCAAAAAATACGTATTTACGGGTAGAAGGGGG GGATTGGGTTGAGTGTGAAATTGTTCACCTGTTGCTGTGAATCTTTCACA CGGTTGTGGGGCTCAAGGCCGCCGTTCCCCTGAAGACAGTAAAGATTTAT GAACACAGAACTAGAATTGGGGTTAAACCAATATTTTTGGTAGAGGAAAA AAAAGGCCCAATCTATTTCAGTGGGAGCGTACGTTATATATTTTGCTATG GGATCCTGTTATCATACCTCCGTACCATATTCAGCATTGTTGACTTACTT GATTTGATTTATTTGATTGATTTGCACACCGCCGTCCCCCCCCCCTCCAA TCCCGCGCATGTTATTCTGCGAGTAAATACTGAAAGTTGGTATCTGTTTC GAGCGGAGTAACGCCTTTACAGCATGGTGTCCCTTGGCAATAACAATTGC CGTCATTGTGCACCGTAACACACGTGTAACGCGAGGTTTGCGGGCAAGCC CAGCCACATTGTAGCACGTGTACATGCCTGCAGTAATCTAGAGCTCTAGA GCTACAAACTGAAGTGCGTTATACGGGGCTTGAGACCTTTTTTCAGAGTC TGCGAGCTCCCCCTGTCCCCGACCCGGCCAACCCACCCCACCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCTCCTCCCCCCCCCCCTCT TTTCTTCCTGCCCCACAAACCAAACAAANNNNNNNNNNGAGGCAAAAACC GAGGAGCGTTATACGGGGGTTCAGGCCTTTTTTTCGAGTCCGCGCTCCCC CCCTACCCCCCACCCCGCCACCCAACCCACCCCCCCCCCCCCCCCCCCTC CAACCTATGCCACGCTAATTTGACCGTCTCCGCTTTTTGCCGTTGCCCGC AAAAAAATAAAAACGAAACGCAGGGGTCGGACGCCTGGAGATCAACTACG CCCGCGTGCTGCGACAATCGCCGCTTGATCTTCGCACCGAACGGTTGCTC AATTTTGGCTTTGGGGTGTCTTTTGAGTGATGCCACATGCTGCAGACGGT GCCACTGTTGTTTTGTGTGCGCATTTACGGGACGTCGCCGGTTACGCATA CTTGTATAAGCAAAGTAAAAAACCTGAAATTTGTTTCAAAAGCGATTCGT CATCGCACTCCCAACGTCTCCTTTGTTTTTTTTGCGTTTTGCATACTGTA CACGATTCGGCTCCGCCTGACGCTGCTATGTGCAGTAGCCCAGCCGCCTC TGGATGAAAACCGCGCGCGCATGATGCACATCGCACGTCAGTGACACGCA CGCGAAGAGTACGACAGGAAATTATCGTTATAAAACCTGTTTGTTTTTTC TATCAGATTTAAGGTGAGACTATCATACGACTGCTACTCTGTGCGCGACG CACAGCGAGTTAAACGATGGCGGGTCCATCTGCGCACACCATGGGTGCCA CCTGCGCATTTTTGAACCACATGCTTGTATGAGCTTGGGGGACATTGGGT GGGTGGATCTGGCGATGATGAAACCTTGCAATTTTTCGCGCGAGGCTCGT ATGTATGCGCTGTCGGGATTGTGGTAGATAGAGGTGAACTCAAAGGTAGC CCCATCATACCCGGTTCGTTGGCCTAAACTACACTTGGCCGGGGTGAATT AATTCCACACCTGAGAGCCCCTTTGCTCAGAACACGCCTTTTTTATTTGC TAAAAGATAATATCGGCGTTTGTTAAATAAAAAATATTAGTCTTCATGTT AGTGGGACTCTAAGTTGTTGTATTCGCCATGTGTTCAATTCCATAAAACT GAAGGAAAAGTGTCGCAAATCCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9867:1770..6393-

>mRNA_S-dermatodea_contig9867.17829.1 ID=mRNA_S-dermatodea_contig9867.17829.1|Name=mRNA_S-dermatodea_contig9867.17829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at S-dermatodea_contig9867:1770..6393- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCCTCCGCGACATCATGCCCCGGAGGAACCCGGGAGTCCCCTACGC
CTACGCGGCGTCGCTCGGTGTGGTGGCGGACGCGAAACCGTCGATGAAGA
GCAGCTTGAAGTACACGTTCACCGACGATCAGCGAGACAACTCGTTCGTG
CCGACCGCCGGGTCTTACTTTCAGGCCACCGCGGAGGGGGCGGATGGGCC
TCCGCGACATCATGCCCCGGAGGAACCCGGGAGTCCCCTACGCCTACGCG
GCGTCGCTCGGTGTGGTGGCGGACGCGAAACCGTCGATGAAGAGCAGCTT
GAAGTACACGTTCACCGACGATCAGCGAGACAACTCGTTCGTGCCGACCG
CCGGGTCTTACTTTCAGGCCACCGCGGAGGGGGCGGGGCTGGTGGGAGAC
GCGACTTTCGGGAAGGGGACGTTCGAGCTCCAAAAGCACTTTCCCCTTGC
GATGCTGCTGTACGGCCCGGTCGAGAGTCCCATTTCGCTCAGCCTTTGCG
CGTCTGGAGGGGCGATACGGGCTGGTGGGAGACGCGACTTTCGGGAAGGG
GACGTTCGAGCTCCAAAAGCACTTTCCCCTTGCGATGCTGCTGTACGGCC
CGGTCGAGAGTCCCATTTCGCTCAGCCTTTGCGCGTCTGGAGGGGCGATA
CGGCCGCTTGGCCCCTCCAAGCGGACGCTTTTCAGCGACCGGTTCAACCT
CGGGGGTCCGATGACGCTTCGCGGCTTTCCCTTTTACGGCATCGGTCCTC
GAGCGCCGAAAGAGGAAGGTGGTTGCCCCGGGGGGGATGCTCTGGGCGGG
GACATAAAGTACACAGGCCGCTTGGCCCCTCCAAGCGGACGCTTTTCAGC
GACCGGTTCAACCTCGGGGGTCCGATGACGCTTCGCGGCTTTCCCTTTTA
CGGCATCGGTCCTCGAGCGCCGAAAGAGGAAGGTGGTTGCCCCGGGGGGG
ATGCTCTGGGCGGGGACATAAAGTACACAGCCTCGGCGTCGCTAGGGTTT
CCATTCCCGTTTCCGGCGATGGCGACGGCGGGGTGGCGTGGGTATCTCTT
CAGCAACCTGGGGAACCTGACGACGTGGGACACGCCGTTGAAGGACTATG
CCCGTGATACCAGGGTTTCGGTCGGTGTTGCCGCCGCGTGGAATTTCTTG
GCCTCGGCGTCGCTAGGGTTTCCATTCCCGTTTCCGGCGATGGCGACGGC
GGGGTGGCGTGGGTATCTCTTCAGCAACCTGGGGAACCTGACGACGTGGG
ACACGCCGTTGAAGGACTATGCCCGTGATACCAGGGTTTCGGTCGGTGTT
GCCGCCGCGTGGAATTTCTTGGGGGTCGGACGCCTGGAGATCAACTACGC
CCGCGTGCTGCGACAATCGCCGCTTGATCTTCGCACCGAACGGTTGCTCA
ATTTTGGCTTTGGGGTGTCTTTTGAGTGAGGGTCGGACGCCTGGAGATCA
ACTACGCCCGCGTGCTGCGACAATCGCCGCTTGATCTTCGCACCGAACGG
TTGCTCAATTTTGGCTTTGGGGTGTCTTTTGAGTGA
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