mRNA_S-dermatodea_contig9867.17829.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: D7G3C0_ECTSI (Sorting and Assembly Machinery 50kDa protein (N-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C0_ECTSI) HSP 1 Score: 317 bits (812), Expect = 1.290e-99 Identity = 153/192 (79.69%), Postives = 164/192 (85.42%), Query Frame = 1
Query: 211 GLVGDATFGKGTFELQKHFPLAMLLYGP-VESPISLSLCASGGAIRPLGPSKRTLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPLKDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSFE 783
GL+GD +F KG E+Q+H PL + GP SP++LSLCASGGAIRP GPSKRT FSDRFNLGGPMTLRGFPFYG GPR+PKEEGGC GGDALGGDI+YTASASLGFP AMATAGWRGYLF+NLGNLTTWDTPLK Y RDTRVSVGVAAAWNFLGVGRLEINYA VLR+SP DL ER L FGFGVSFE
Sbjct: 260 GLMGDTSFAKGMLEMQRHIPLFGVELGPETYSPVTLSLCASGGAIRPFGPSKRTFFSDRFNLGGPMTLRGFPFYGAGPRSPKEEGGCEGGDALGGDIRYTASASLGFPFPVPAMATAGWRGYLFTNLGNLTTWDTPLKQYGRDTRVSVGVAAAWNFLGVGRLEINYAHVLRRSPRDLHRERPLQFGFGVSFE 451
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A835YSQ9_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ9_9STRA) HSP 1 Score: 237 bits (605), Expect = 7.230e-69 Identity = 133/267 (49.81%), Postives = 168/267 (62.92%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQAT-AEGAGLVGDATFGKGTFELQKHFP---LAMLLYGPVESPISLSLCASGGAIRPLGPS--KRTLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPLKDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSFE 783
HAL EM RD+MPRR+P VPYA+AASL V+ +++PS++SS++Y +T D RD+ +VPT G Y QA+ E A GD +F KG LQ+H LA + PISL +C GA+RP G K SDR+ LGGPM LRGF G GPRAPKEEGG GD+LGGDI+ TASA+L FP +A G R LF+N GNLTTW TPL RD R +VGV + G+GR+E ++ VLR++P D R FG G+ FE
Sbjct: 189 HALTGEMTWRDVMPRRHPTVPYAHAASLSVLRESRPSVRSSMRYAYTQDGRDSPYVPTVGPYLQASHREAAVPPGDVSFLKGHIALQQHMSFVDLAPIFLSVNPLPISLGVCLGLGAVRPFGSDAGKPARISDRYFLGGPMMLRGFKVAGTGPRAPKEEGGNLEGDSLGGDIRATASAALSFPFPVSPLAQWGVRLQLFANAGNLTTWQTPLDRMHRDARAAVGVGIVSSLFGMGRVEATWSHVLRKAPHD--QTRRAQFGMGLVFE 453
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A484DQ43_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQ43_BRELC) HSP 1 Score: 216 bits (549), Expect = 1.390e-60 Identity = 120/269 (44.61%), Postives = 163/269 (60.59%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGP--SKRTLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
H L++ +G RD++PRR+ +P AY AS ++A+A PS K+SLKY FTDD RDN PTAG F+ + E AGLV D F K E QKH + L +G P+ ++ S+ G ++ G ++ SDRF LGGPM+LRGF + GIGPR+ E+GG GDALGGD+ Y +AS+GFP ++ G RG LF+N GNLTTWD L K+ DTRVS+G+ W +GRLE NY+ +L+ D + FG G++F
Sbjct: 198 HDLSINIGWRDLLPRRDSKIPTAYRASPSILAEAMPSTKTSLKYVFTDDDRDNIVYPTAGGLFKYSTEIAGLVSDVKFVKAEVEGQKHVAIGPLFFGLPI---LNFSISYRLGTVKSYGSEHNRPARISDRFFLGGPMSLRGFNYKGIGPRSSPEDGGVAQGDALGGDVSYHGTASVGFPVPLPLLSALGLRGQLFANAGNLTTWDRVLDENQWMKNLVDDTRVSIGMGLVWG-TRIGRLEANYSWILKSLTHD--NIKRAQFGLGMTF 460
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A8K1CC02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC02_PYTOL) HSP 1 Score: 216 bits (549), Expect = 1.390e-60 Identity = 120/269 (44.61%), Postives = 161/269 (59.85%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
H L++ +G RDI+PRR+ +P A+ AS ++A+A PS K+SLKY F DD R+N VPTAG FQ + E AG+ GD F K QKHF L +++G P+ ++ S GA+ G + T SDRF LGGP+++RGF GIGPRA +GG GD+LGGD+ YTA+AS+GFP MA G RG++F+N+GNLTTW L K DTR SVGV W +GR+E NY+ +L+ D + G GV+F
Sbjct: 198 HELSLNLGWRDIIPRRDSRIPTAFRASPSIIAEALPSTKTSLKYVFRDDTRNNLVVPTAGGLFQYSTEVAGIFGDVRFIKAEVAAQKHFGLGPIVFGHPI---LNFSFATQFGAVNAYGVDEHRPTRLSDRFFLGGPLSVRGFNHKGIGPRASPNDGGSKWGDSLGGDVSYTATASMGFPLPVPLMAMLGMRGHVFANVGNLTTWSRLLDEKKWMKHLVDDTRASVGVGIVWG-TSIGRIEANYSWILKAHEHD--NIKRAQIGLGVTF 460
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A2D4CD39_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD39_PYTIN) HSP 1 Score: 218 bits (556), Expect = 3.410e-59 Identity = 124/269 (46.10%), Postives = 161/269 (59.85%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
H L++ +G RDI+PRR+ +P A+ AS V+A+A PS K+S+KY F DD R+N+ +PT G FQ + E AGLVGD F K QKH + +L+G P+ +S S GAI+ G + T SDRF LGGP+++RGF GIGPRA +GG GDALGGD+ YTASAS+GFP MA G RG +F+N GNLTTW L K DTRVSVGV W +GR+E NY+ VL+ D + G G++F
Sbjct: 178 HELSLNLGWRDIIPRRDAKIPTAFRASPSVIAEAMPSTKASIKYVFKDDTRNNAVLPTDGGLFQYSTEIAGLVGDVRFVKAEVAAQKHIGIGPVLFGHPI---LSFSFATHLGAIKSYGSDEHRPTRLSDRFFLGGPLSVRGFHHKGIGPRASPNDGGVKSGDALGGDVSYTASASMGFPLPVPLMAMLGMRGQIFANAGNLTTWSRLLNEKKWMKHLVDDTRVSVGVGIVWG-TSIGRIEANYSWVLKSHQHD--NVKRSQIGLGMTF 440
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A0P1B4D7_PLAHL (Sorting and assembly machinery component 50 putativ n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4D7_PLAHL) HSP 1 Score: 210 bits (534), Expect = 2.010e-58 Identity = 120/272 (44.12%), Postives = 155/272 (56.99%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSFE*C 789
H L+ +G RD++PRR+P +P AY AS ++A+A PS K+S+KY FTDD RDN PT G F+ + E AGL GD F K E QKHF L L G P+ ++ S G ++ G + SDRF LGGPM LRGF GIGPRA +GG GDALGGD+ Y +AS+GFP +A G RG F+N GNLTTWD L K+ DTRVS+G+ W +GRLE NY+ +L+ L + + G+S C
Sbjct: 196 HDLSFNVGWRDLLPRRDPKIPTAYRASPSILAEAMPSTKTSVKYVFTDDNRDNIVYPTTGGLFKYSTEIAGLAGDVKFVKAEVEGQKHFALGPLFLGFPL---LNFSFSGHMGTVKSYGSEQHRPVRISDRFFLGGPMNLRGFNHKGIGPRASPLDGGVAQGDALGGDVSYHGTASVGFPVMLPLLAALGLRGQFFANAGNLTTWDRVLDEKKWMKNLVDDTRVSIGIGLVWG-TRIGRLEANYSWILK----SLNHDNIKRAQLGLSMTFC 459
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A2D4BF57_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF57_PYTIN) HSP 1 Score: 216 bits (551), Expect = 5.540e-58 Identity = 123/269 (45.72%), Postives = 161/269 (59.85%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
H L++ +G RDI+PRR+ +P A+ AS V+A+A PS K+S+KY F DD R+N+ +PT G FQ + E AGLVGD F K QKH + +L+G P+ +S S GAI+ G + T SDRF LGGP+++RGF GIGPRA +GG GDALGGD+ YTASAS+GFP MA G RG +F+N GNLTTW L K DTRVSVGV W +GR+E +Y+ VL+ D + G G++F
Sbjct: 156 HELSLNLGWRDIIPRRDAKIPTAFRASPSVIAEAMPSTKASIKYVFKDDTRNNAVLPTDGGLFQYSTEIAGLVGDVRFVKAEVAAQKHIGIGPVLFGHPI---LSFSFATHLGAIKSYGSDEHRPTRLSDRFFLGGPLSVRGFHHKGIGPRASPNDGGVKSGDALGGDVSYTASASMGFPLPVPLMAMLGMRGQIFANAGNLTTWSRLLNEKKWMKHLVDDTRVSVGVGIVWG-TSIGRIEASYSWVLKSHQHD--NVKRSQIGLGMTF 418
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: M4BJR2_HYAAE (Omp85 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJR2_HYAAE) HSP 1 Score: 209 bits (531), Expect = 8.330e-58 Identity = 120/269 (44.61%), Postives = 158/269 (58.74%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
H L++ +G RD++PRR+ +P AY AS ++A+A PS K+S+KY FTDD RDN P AG F+ T E AGLVGD F K E QKH ++G P+ ++ SL G ++ G + SDRF LGGPM +RGF GIGPRA +GG GDALGGD+ Y +AS+GFP A G RG +F+N+GNLTTWD L K+ A DTRVSVG+ W +GRLE NY+ +L+ D + G G++F
Sbjct: 214 HELSLNVGWRDLLPRRDSKIPTAYRASPSILAEAMPSTKTSVKYVFTDDNRDNIVYPVAGGLFKYTTEIAGLVGDVKFVKAEVEGQKHMAAGPEMFGFPI---LNFSLSYHLGTVKSYGSDQNRPARISDRFFLGGPMNVRGFNHKGIGPRASPLDGGVVQGDALGGDVSYRGTASMGFPVPLPLFAALGLRGQVFANVGNLTTWDRLLDEKKWMKNLADDTRVSVGLGLVWG-TRIGRLEANYSWILKAHAHD--NIKRAQLGLGLTF 476
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: H3GJ66_PHYRM (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GJ66_PHYRM) HSP 1 Score: 208 bits (529), Expect = 1.230e-57 Identity = 121/269 (44.98%), Postives = 157/269 (58.36%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYG-PVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGVGRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
H L++ +G RD++PRR+ +P AY AS ++A+A PS K+S+KY FTDD+R+N PTAG F+ T E AGLVGD F K E QKH L +L G P+ ++ SL G ++ G + SDRF LGGPM +RGF GIGPRA +GG GDALGGD+ Y +ASLGFP G RG F+N GNLTTWD L K+ DTRVSVG+ W +GRLE NY+ +L+ D + G G++F
Sbjct: 202 HDLSLNVGWRDLLPRRDSKIPTAYRASPSILAEAMPSTKTSVKYVFTDDKRNNVVYPTAGGLFKYTTEIAGLVGDVKFVKAEVEGQKHVALGPVLNGFPI---LNFSLSYHLGTVKSYGSEQNRPARISDRFFLGGPMNVRGFNHKGIGPRASPLDGGVAQGDALGGDVSYNGTASLGFPVPLPLFVALGLRGQFFANAGNLTTWDRLLDEKKWLKNLTDDTRVSVGMGLVWG-TRIGRLEANYSWILKAHAHD--NIKRAQLGLGMTF 464
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Match: A0A1V9ZWW2_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWW2_9STRA) HSP 1 Score: 200 bits (509), Expect = 6.840e-55 Identity = 118/270 (43.70%), Postives = 163/270 (60.37%), Query Frame = 1
Query: 1 HALAVEMGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVPTAGSYFQATAEGAGLVGDATFGKGTFELQKHFPLAMLLYGPVESPISLSLCASGGAIRPLGPSKR--TLFSDRFNLGGPMTLRGFPFYGIGPRAPKEEGGCPGGDALGGDIKYTASASLGFPXXXXAMATAGWRGYLFSNLGNLTTWDTPL------KDYARDTRVSVGVAAAWNFLGV--GRLEINYARVLRQSPLDLRTERLLNFGFGVSF 780
H LA +G RDI+P RN +P YAAS ++A+A+PS KSS+KY + DDQR++S +PT+G + + E AGL GD F KG E+Q+H+P+ + Y ++LSL + GA++ G K+ SDRF LGGP+TLRGF G+GPRA ++GG GDALGG+I Y+A ASLGFP +A G RG++F N G+L WD L K+ +D+R + GV +G GR E NY+ VL+ D R +R G G+ F
Sbjct: 187 HELAFNLGWRDIVPIRNKKIPSTYAASPSIMAEAEPSTKSSVKYVYNDDQRNDSALPTSGRLLRTSLEVAGLWGDVNFVKGEVEVQRHYPIGPIAYN--HPFLNLSLSSRLGAVKSYGSDKQQPARISDRFFLGGPLTLRGFNHKGVGPRANPDDGGVATGDALGGEIFYSACASLGFPFPVPLLALLGVRGHVFCNAGSLFGWDRVLDEQNWMKNLLQDSRAAAGVGIV---IGTRFGRFEANYSWVLKSLAGD-RVKRA-QLGLGMHF 449 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9867.17829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9867.17829.1 >prot_S-dermatodea_contig9867.17829.1 ID=prot_S-dermatodea_contig9867.17829.1|Name=mRNA_S-dermatodea_contig9867.17829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=256bp MGLRDIMPRRNPGVPYAYAASLGVVADAKPSMKSSLKYTFTDDQRDNSFVback to top mRNA from alignment at S-dermatodea_contig9867:1770..6393- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9867.17829.1 ID=mRNA_S-dermatodea_contig9867.17829.1|Name=mRNA_S-dermatodea_contig9867.17829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4624bp|location=Sequence derived from alignment at S-dermatodea_contig9867:1770..6393- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9867:1770..6393- >mRNA_S-dermatodea_contig9867.17829.1 ID=mRNA_S-dermatodea_contig9867.17829.1|Name=mRNA_S-dermatodea_contig9867.17829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at S-dermatodea_contig9867:1770..6393- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |