mRNA_S-dermatodea_contig9854.17822.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A6H5JYY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE) HSP 1 Score: 167 bits (424), Expect = 3.360e-46 Identity = 82/92 (89.13%), Postives = 90/92 (97.83%), Query Frame = 1
Query: 1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
+SYARMKGKKRSELALE+FRAE GPRALMLPIKTGSHGLNLV+ANHVF+LEPLLNAAVEAQAVNRVHRGGQ+RPT++HRF+VR TIEEDIER
Sbjct: 2053 VSYARMKGKKRSELALEAFRAEGGPRALMLPIKTGSHGLNLVEANHVFLLEPLLNAAVEAQAVNRVHRGGQSRPTTIHRFIVRGTIEEDIER 2144
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI) HSP 1 Score: 167 bits (423), Expect = 4.580e-46 Identity = 82/92 (89.13%), Postives = 89/92 (96.74%), Query Frame = 1
Query: 1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
+SYARMKGK RSELALE+FRAE GPRALMLPIKTGSHGLNLV+ANHVF+LEPLLNAAVEAQAVNRVHRGGQTRPT++HRF+VR TIEEDIER
Sbjct: 2146 VSYARMKGKNRSELALEAFRAEGGPRALMLPIKTGSHGLNLVEANHVFLLEPLLNAAVEAQAVNRVHRGGQTRPTTIHRFIVRGTIEEDIER 2237
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S2CP75_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CP75_9EUKA) HSP 1 Score: 101 bits (252), Expect = 7.510e-25 Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDI 270
+ + R++G E AL FR E RAL+LP+K+G++G+NLV+A HVF+ EPLL VEAQ + RVHR QTRPT VHRFV+R TIEE I
Sbjct: 39 IQFERLQGASGLEGALRKFRGEPEVRALLLPLKSGANGINLVEAQHVFLAEPLLEREVEAQCIGRVHRMSQTRPTVVHRFVMRGTIEEAI 128
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S3AJT2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJT2_9EUKA) HSP 1 Score: 100 bits (248), Expect = 8.530e-25 Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
+ + R+ G+ E L SFR RAL+LP+ G++GLNLV+A HVF++EPLLN+AVEAQAV RVHR Q R T+VHRF+V T+EE I +
Sbjct: 20 IRFCRLHGQTNLESTLASFRQCGDMRALLLPLSRGANGLNLVEAQHVFLVEPLLNSAVEAQAVGRVHRMSQLRATTVHRFIVAGTVEEAIHK 111
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S4D6P5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6P5_HETAK) HSP 1 Score: 99.8 bits (247), Expect = 1.880e-24 Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 37 ELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
E L +FR G L+L ++ G+ GL L +A HVF+LEP+LN A+EAQAVNRVHR GQTRPT VHR++V+DTIEE IE+
Sbjct: 68 EERLRNFRTGEGITCLLLTLRQGAEGLTLTEATHVFLLEPVLNPALEAQAVNRVHRVGQTRPTRVHRYIVQDTIEERIEQ 147
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S0LHZ6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHZ6_9EUKA) HSP 1 Score: 100 bits (248), Expect = 2.090e-24 Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1
Query: 1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
+S+ R+ GK + E A+ +F+ E RAL+LP+ +G++GLNLV+A HV ++EPL+N +EAQA+ RVHR Q R T+VHRFVV+ TIE+ I R
Sbjct: 92 VSHRRVTGKAQFEAAIGAFKGEPTMRALLLPLSSGANGLNLVEATHVLLVEPLINTEIEAQAIGRVHRMSQRRATTVHRFVVKGTIEQAISR 183
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: W7U2C9_9STRA (Snf2 histone linker phd ring helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2C9_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.290e-24 Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIE--RQVNVA 291
+ R+KG++ + + FR R ++L +K+G+ GL LV+ANHVF+LEP+ NAA EAQAVNRV R GQT+PT +HRFVVR+TIEE++E RQ VA
Sbjct: 2046 IDIVRLKGERTAGRVRQEFRENESVRCMLLNLKSGAKGLTLVEANHVFLLEPIFNAATEAQAVNRVFRIGQTKPTVIHRFVVRNTIEENVEKMRQSKVA 2144
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S0INM8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INM8_9EUKA) HSP 1 Score: 102 bits (253), Expect = 3.330e-24 Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 1
Query: 7 YARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDI 270
Y R++G++ + L +FR RAL+LP+++G++G+NLV+A HV ++EPLL AAVEAQA+ R+HR Q R T+VHRFVVR TIEE I
Sbjct: 126 YCRLQGRQTMDAELHAFRHTRDVRALLLPLRSGANGINLVEAQHVMLVEPLLEAAVEAQAIGRIHRMSQARETTVHRFVVRGTIEESI 213
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S3TV63_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TV63_EMIHU) HSP 1 Score: 102 bits (253), Expect = 1.530e-23 Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 1
Query: 7 YARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDI 270
+ R++G + AL SFR + R L+LP+K+G++G++LV+A HVF+ EPLL AVEAQAV RVHR QTRPT+VHRFV+R TIEE I
Sbjct: 247 FRRLQGAGTLDAALHSFRNDPSVRVLLLPLKSGANGISLVEAQHVFLSEPLLERAVEAQAVGRVHRMSQTRPTAVHRFVMRGTIEEAI 334
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: R1DDS5_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DDS5_EMIHU) HSP 1 Score: 94.0 bits (232), Expect = 2.310e-23 Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 55 FRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDI 270
FR + R L+LP+K+G++G++LV+A HVF+ EPLL AVEAQAV RVHR QTRPT VHRFV+R TIEE I
Sbjct: 1 FRNDPSVRVLLLPLKSGANGISLVEAQHVFLSEPLLERAVEAQAVGRVHRMSQTRPTVVHRFVMRGTIEEAI 72 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9854.17822.1 >prot_S-dermatodea_contig9854.17822.1 ID=prot_S-dermatodea_contig9854.17822.1|Name=mRNA_S-dermatodea_contig9854.17822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp MKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNback to top mRNA from alignment at S-dermatodea_contig9854:1984..2817+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9854.17822.1 ID=mRNA_S-dermatodea_contig9854.17822.1|Name=mRNA_S-dermatodea_contig9854.17822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig9854:1984..2817+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9854:1984..2817+ >mRNA_S-dermatodea_contig9854.17822.1 ID=mRNA_S-dermatodea_contig9854.17822.1|Name=mRNA_S-dermatodea_contig9854.17822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig9854:1984..2817+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |