mRNA_S-dermatodea_contig9854.17822.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9854.17822.1
Unique NamemRNA_S-dermatodea_contig9854.17822.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A6H5JYY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 3.360e-46
Identity = 82/92 (89.13%), Postives = 90/92 (97.83%), Query Frame = 1
Query:    1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
            +SYARMKGKKRSELALE+FRAE GPRALMLPIKTGSHGLNLV+ANHVF+LEPLLNAAVEAQAVNRVHRGGQ+RPT++HRF+VR TIEEDIER
Sbjct: 2053 VSYARMKGKKRSELALEAFRAEGGPRALMLPIKTGSHGLNLVEANHVFLLEPLLNAAVEAQAVNRVHRGGQSRPTTIHRFIVRGTIEEDIER 2144          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.580e-46
Identity = 82/92 (89.13%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
            +SYARMKGK RSELALE+FRAE GPRALMLPIKTGSHGLNLV+ANHVF+LEPLLNAAVEAQAVNRVHRGGQTRPT++HRF+VR TIEEDIER
Sbjct: 2146 VSYARMKGKNRSELALEAFRAEGGPRALMLPIKTGSHGLNLVEANHVFLLEPLLNAAVEAQAVNRVHRGGQTRPTTIHRFIVRGTIEEDIER 2237          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S2CP75_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CP75_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 7.510e-25
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDI 270
            + + R++G    E AL  FR E   RAL+LP+K+G++G+NLV+A HVF+ EPLL   VEAQ + RVHR  QTRPT VHRFV+R TIEE I
Sbjct:   39 IQFERLQGASGLEGALRKFRGEPEVRALLLPLKSGANGINLVEAQHVFLAEPLLEREVEAQCIGRVHRMSQTRPTVVHRFVMRGTIEEAI 128          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S3AJT2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJT2_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 8.530e-25
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
            + + R+ G+   E  L SFR     RAL+LP+  G++GLNLV+A HVF++EPLLN+AVEAQAV RVHR  Q R T+VHRF+V  T+EE I +
Sbjct:   20 IRFCRLHGQTNLESTLASFRQCGDMRALLLPLSRGANGLNLVEAQHVFLVEPLLNSAVEAQAVGRVHRMSQLRATTVHRFIVAGTVEEAIHK 111          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S4D6P5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6P5_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 1.880e-24
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   37 ELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
            E  L +FR   G   L+L ++ G+ GL L +A HVF+LEP+LN A+EAQAVNRVHR GQTRPT VHR++V+DTIEE IE+
Sbjct:   68 EERLRNFRTGEGITCLLLTLRQGAEGLTLTEATHVFLLEPVLNPALEAQAVNRVHRVGQTRPTRVHRYIVQDTIEERIEQ 147          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S0LHZ6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHZ6_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 2.090e-24
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIER 276
            +S+ R+ GK + E A+ +F+ E   RAL+LP+ +G++GLNLV+A HV ++EPL+N  +EAQA+ RVHR  Q R T+VHRFVV+ TIE+ I R
Sbjct:   92 VSHRRVTGKAQFEAAIGAFKGEPTMRALLLPLSSGANGLNLVEATHVLLVEPLINTEIEAQAIGRVHRMSQRRATTVHRFVVKGTIEQAISR 183          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: W7U2C9_9STRA (Snf2 histone linker phd ring helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2C9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.290e-24
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 LSYARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIE--RQVNVA 291
            +   R+KG++ +    + FR     R ++L +K+G+ GL LV+ANHVF+LEP+ NAA EAQAVNRV R GQT+PT +HRFVVR+TIEE++E  RQ  VA
Sbjct: 2046 IDIVRLKGERTAGRVRQEFRENESVRCMLLNLKSGAKGLTLVEANHVFLLEPIFNAATEAQAVNRVFRIGQTKPTVIHRFVVRNTIEENVEKMRQSKVA 2144          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S0INM8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INM8_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 3.330e-24
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    7 YARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDI 270
            Y R++G++  +  L +FR     RAL+LP+++G++G+NLV+A HV ++EPLL AAVEAQA+ R+HR  Q R T+VHRFVVR TIEE I
Sbjct:  126 YCRLQGRQTMDAELHAFRHTRDVRALLLPLRSGANGINLVEAQHVMLVEPLLEAAVEAQAIGRIHRMSQARETTVHRFVVRGTIEESI 213          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: A0A7S3TV63_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TV63_EMIHU)

HSP 1 Score: 102 bits (253), Expect = 1.530e-23
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    7 YARMKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDI 270
            + R++G    + AL SFR +   R L+LP+K+G++G++LV+A HVF+ EPLL  AVEAQAV RVHR  QTRPT+VHRFV+R TIEE I
Sbjct:  247 FRRLQGAGTLDAALHSFRNDPSVRVLLLPLKSGANGISLVEAQHVFLSEPLLERAVEAQAVGRVHRMSQTRPTAVHRFVMRGTIEEAI 334          
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Match: R1DDS5_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DDS5_EMIHU)

HSP 1 Score: 94.0 bits (232), Expect = 2.310e-23
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   55 FRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLNAAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDI 270
            FR +   R L+LP+K+G++G++LV+A HVF+ EPLL  AVEAQAV RVHR  QTRPT VHRFV+R TIEE I
Sbjct:    1 FRNDPSVRVLLLPLKSGANGISLVEAQHVFLSEPLLERAVEAQAVGRVHRMSQTRPTVVHRFVMRGTIEEAI 72          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9854.17822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYY0_9PHAE3.360e-4689.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHS8_ECTSI4.580e-4689.13SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S2CP75_9EUKA7.510e-2556.67Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3AJT2_9EUKA8.530e-2554.35Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4D6P5_HETAK1.880e-2460.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0LHZ6_9EUKA2.090e-2452.17Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
W7U2C9_9STRA3.290e-2453.54Snf2 histone linker phd ring helicase n=2 Tax=Mono... [more]
A0A7S0INM8_9EUKA3.330e-2454.55Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S3TV63_EMIHU1.530e-2357.95Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1DDS5_EMIHU2.310e-2363.89Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9854contigS-dermatodea_contig9854:1984..2817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue2.7e-37
Seed eggNOG ortholog2880.D7FHS8
KEGG koko:K15710
EggNOG free text desc.ATP binding
EggNOG OGsCOG0553@1,KOG0298@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSNF2 helicase
Ec32 orthologEc-07_006640.2
Exons2
Model size294
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9854.17822.1prot_S-dermatodea_contig9854.17822.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9854 1999..2817 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925435.2244356-UTR-S-dermatodea_contig9854:1983..19981622925435.2244356-UTR-S-dermatodea_contig9854:1983..1998Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9854 1984..1998 +
1694079931.6091774-UTR-S-dermatodea_contig9854:1983..19981694079931.6091774-UTR-S-dermatodea_contig9854:1983..1998Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9854 1984..1998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925435.2349203-CDS-S-dermatodea_contig9854:1998..21061622925435.2349203-CDS-S-dermatodea_contig9854:1998..2106Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9854 1999..2106 +
1694079931.6211524-CDS-S-dermatodea_contig9854:1998..21061694079931.6211524-CDS-S-dermatodea_contig9854:1998..2106Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9854 1999..2106 +
1622925435.248248-CDS-S-dermatodea_contig9854:2646..28171622925435.248248-CDS-S-dermatodea_contig9854:2646..2817Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9854 2647..2817 +
1694079931.6320581-CDS-S-dermatodea_contig9854:2646..28171694079931.6320581-CDS-S-dermatodea_contig9854:2646..2817Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9854 2647..2817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9854.17822.1

>prot_S-dermatodea_contig9854.17822.1 ID=prot_S-dermatodea_contig9854.17822.1|Name=mRNA_S-dermatodea_contig9854.17822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
MKGKKRSELALESFRAENGPRALMLPIKTGSHGLNLVDANHVFILEPLLN
AAVEAQAVNRVHRGGQTRPTSVHRFVVRDTIEEDIERQVNVA*
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mRNA from alignment at S-dermatodea_contig9854:1984..2817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9854.17822.1 ID=mRNA_S-dermatodea_contig9854.17822.1|Name=mRNA_S-dermatodea_contig9854.17822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig9854:1984..2817+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTAGCTACGCGCGGATGAAAGGCAAGAAGAGGTCGGAGTTGGCGCTGGA GTCGTTCAGAGCGGAAAACGGTCCAAGGGCGTTGATGCTTCCGATCAAGA CGGGCTCGCACGGGCTCAATCTGGTGACCGTCTGTTGTTGCCGTTGTTGT TATTGTTGTCTTTGTCGCTGATACTGCCACTCCTTAAATGATATCCTCAA ATTCAGCTGTGGACAGAGAGTAGGGGAATCTCCAAGAGTTATTGTGATGG TCAATTGCTTATTTCCCGAAAAGTTCATGTGCGCTCTTTGCGCTTGGGTT TCAACATTTACACCTGTGGGAGGGATGAGCCACGGCGTGGTGTTTCTAAG CTGAGGTCGACTTTTGACCGGTCCGTTGCTGTACAGTACATTCCCCACGC TGTGGTACGTTCTTGTCGGAAACGACGTAGCTGGACTCTTTAGTGTAGTA CGGCATCGATTCAAGCTGACCAGTGCTGTGGGGTTTGAGTGTCCCAAGCG TTTCAAGTAGCTATTCCCCGCGACCCTTGTTGTACATGGCTTTTGTACGC GCTTGGAAACAAAGCCGCAATACCCTTGAAATCGGAAAACTGAGGGCAAG GACGTGCCCTGCGGCTGACATGCGGCGACTTGTGTTTTCGTGTCCCCAAA ACCGTGTCTGCAGGTCGACGCGAATCACGTGTTCATCCTTGAGCCTCTTC TAAACGCGGCGGTGGAGGCCCAAGCGGTAAACCGCGTCCACAGGGGGGGG CAAACACGCCCAACCTCTGTCCACCGCTTCGTAGTGCGGGACACCATTGA AGAGGACATTGAGAGGCAAGTGAACGTTGCCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9854:1984..2817+

>mRNA_S-dermatodea_contig9854.17822.1 ID=mRNA_S-dermatodea_contig9854.17822.1|Name=mRNA_S-dermatodea_contig9854.17822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig9854:1984..2817+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAAGGCAAGAAGAGGTCGGAGTTGGCGCTGGAGTCGTTCAGAGCGGA
AAACGGTCCAAGGGCGTTGATGCTTCCGATCAAGACGGGCTCGCACGGGC
TCAATCTGATGAAAGGCAAGAAGAGGTCGGAGTTGGCGCTGGAGTCGTTC
AGAGCGGAAAACGGTCCAAGGGCGTTGATGCTTCCGATCAAGACGGGCTC
GCACGGGCTCAATCTGGTCGACGCGAATCACGTGTTCATCCTTGAGCCTC
TTCTAAACGCGGCGGTGGAGGCCCAAGCGGTAAACCGCGTCCACAGGGGG
GGGCAAACACGCCCAACCTCTGTCCACCGCTTCGTAGTGCGGGACACCAT
TGAAGAGGACATTGAGAGGCAAGTGAACGTTGCCTGAGTCGACGCGAATC
ACGTGTTCATCCTTGAGCCTCTTCTAAACGCGGCGGTGGAGGCCCAAGCG
GTAAACCGCGTCCACAGGGGGGGGCAAACACGCCCAACCTCTGTCCACCG
CTTCGTAGTGCGGGACACCATTGAAGAGGACATTGAGAGGCAAGTGAACG
TTGCCTGA
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