mRNA_S-dermatodea_contig9852.17821.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9852.17821.1
Unique NamemRNA_S-dermatodea_contig9852.17821.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9852.17821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9852contigS-dermatodea_contig9852:5141..5683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9852.17821.1prot_S-dermatodea_contig9852.17821.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9852 5205..5609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925435.1607938-UTR-S-dermatodea_contig9852:5140..52041622925435.1607938-UTR-S-dermatodea_contig9852:5140..5204Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9852 5141..5204 +
1694079931.5655608-UTR-S-dermatodea_contig9852:5140..52041694079931.5655608-UTR-S-dermatodea_contig9852:5140..5204Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9852 5141..5204 +
1622925435.1921175-UTR-S-dermatodea_contig9852:5609..56831622925435.1921175-UTR-S-dermatodea_contig9852:5609..5683Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9852 5610..5683 +
1694079931.5988147-UTR-S-dermatodea_contig9852:5609..56831694079931.5988147-UTR-S-dermatodea_contig9852:5609..5683Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9852 5610..5683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925435.1757948-CDS-S-dermatodea_contig9852:5204..56091622925435.1757948-CDS-S-dermatodea_contig9852:5204..5609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9852 5205..5609 +
1694079931.587038-CDS-S-dermatodea_contig9852:5204..56091694079931.587038-CDS-S-dermatodea_contig9852:5204..5609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9852 5205..5609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9852.17821.1

>prot_S-dermatodea_contig9852.17821.1 ID=prot_S-dermatodea_contig9852.17821.1|Name=mRNA_S-dermatodea_contig9852.17821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
MLLEMPIPPRLVEESSGVDLMPAVPPSAAHRIDAQTGPRDHRNTAQGWRR
VGSPLLAWWQPSSSLVTAPSPALGSGCLLPVLHLVQQEKLPLCSEPCRVE
RVLALCTPVGCDGNLLYLLVWCLFSTAVGLALLP*
back to top

mRNA from alignment at S-dermatodea_contig9852:5141..5683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9852.17821.1 ID=mRNA_S-dermatodea_contig9852.17821.1|Name=mRNA_S-dermatodea_contig9852.17821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at S-dermatodea_contig9852:5141..5683+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCGTGCTTGCGGCGCTGCTGCTGCCGCTGGTCGCGCCGCCGACGCCAC
TAGCCGGGACGAATATGCTCTTGGAGATGCCGATCCCGCCGCGACTCGTC
GAGGAGAGCAGCGGTGTTGACCTGATGCCAGCGGTACCGCCCTCGGCAGC
CCACCGCATTGATGCACAAACGGGGCCACGGGACCACAGAAATACAGCGC
AAGGGTGGCGACGAGTTGGTTCGCCGCTCTTGGCTTGGTGGCAACCATCT
TCTTCGCTCGTTACGGCGCCCTCTCCTGCTCTGGGCTCTGGCTGCTTGCT
GCCTGTGCTGCACTTGGTTCAACAAGAAAAATTGCCACTCTGCTCAGAGC
CGTGTCGTGTAGAACGAGTGCTCGCTCTCTGCACACCGGTCGGCTGTGAT
GGCAATCTCCTGTACCTGCTGGTGTGGTGTTTGTTCTCTACAGCAGTGGG
TCTAGCTTTGCTTCCGTAGGGGTGCGTGCTTCAGCAACGCAGCGCTGCTC
TCCGCCGATGATCACACAAACGTACATAGCACTTCCACATAAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9852:5141..5683+

>mRNA_S-dermatodea_contig9852.17821.1 ID=mRNA_S-dermatodea_contig9852.17821.1|Name=mRNA_S-dermatodea_contig9852.17821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig9852:5141..5683+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCTTGGAGATGCCGATCCCGCCGCGACTCGTCGAGGAGAGCAGCGG
TGTTGACCTGATGCCAGCGGTACCGCCCTCGGCAGCCCACCGCATTGATG
CACAAACGGGGCCACGGGACCACAGAAATACAGCGCAAGGGTGGCGACGA
GTTGGTTCGCCGCTCTTGGCTTGGTGGCAACCATCTTCTTCGCTCGTTAC
GGCGCCCTCTCCTGCTCTGGGCTCTGGCTGCTTGCTGCCTGTGCTGCACT
TGGTTCAACAAGAAAAATTGCCACTCTGCTCAGAGCCGTGTCGTGTAGAA
CGAGTGCTCGCTCTCTGCACACCGGTCGGCTGTGATGGCAATCTCCTGTA
CCTGCTGGTGTGGTGTTTGTTCTCTACAGCAGTGGGTCTAGCTTTGCTTC
CGTAGATGCTCTTGGAGATGCCGATCCCGCCGCGACTCGTCGAGGAGAGC
AGCGGTGTTGACCTGATGCCAGCGGTACCGCCCTCGGCAGCCCACCGCAT
TGATGCACAAACGGGGCCACGGGACCACAGAAATACAGCGCAAGGGTGGC
GACGAGTTGGTTCGCCGCTCTTGGCTTGGTGGCAACCATCTTCTTCGCTC
GTTACGGCGCCCTCTCCTGCTCTGGGCTCTGGCTGCTTGCTGCCTGTGCT
GCACTTGGTTCAACAAGAAAAATTGCCACTCTGCTCAGAGCCGTGTCGTG
TAGAACGAGTGCTCGCTCTCTGCACACCGGTCGGCTGTGATGGCAATCTC
CTGTACCTGCTGGTGTGGTGTTTGTTCTCTACAGCAGTGGGTCTAGCTTT
GCTTCCGTAG
back to top