mRNA_S-dermatodea_contig9851.17820.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9851.17820.1
Unique NamemRNA_S-dermatodea_contig9851.17820.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9851.17820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9851contigS-dermatodea_contig9851:5885..6311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925435.1157176-CDS-S-dermatodea_contig9851:5884..59221622925435.1157176-CDS-S-dermatodea_contig9851:5884..5922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9851 5885..5922 +
1694079931.539362-CDS-S-dermatodea_contig9851:5884..59221694079931.539362-CDS-S-dermatodea_contig9851:5884..5922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9851 5885..5922 +
1622925435.1257694-CDS-S-dermatodea_contig9851:6097..63111622925435.1257694-CDS-S-dermatodea_contig9851:6097..6311Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9851 6098..6311 +
1694079931.5499759-CDS-S-dermatodea_contig9851:6097..63111694079931.5499759-CDS-S-dermatodea_contig9851:6097..6311Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9851 6098..6311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9851.17820.1prot_S-dermatodea_contig9851.17820.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9851 5885..6311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9851.17820.1

>prot_S-dermatodea_contig9851.17820.1 ID=prot_S-dermatodea_contig9851.17820.1|Name=mRNA_S-dermatodea_contig9851.17820.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
MEALRRAKKPPAKDASLTRSYTSMLEDFVILAGQVHKADTSCGGPLSTHG
PDAERSDAVGMKCVCLGCGANFRRLNIGGNRLSR
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mRNA from alignment at S-dermatodea_contig9851:5885..6311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9851.17820.1 ID=mRNA_S-dermatodea_contig9851.17820.1|Name=mRNA_S-dermatodea_contig9851.17820.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=427bp|location=Sequence derived from alignment at S-dermatodea_contig9851:5885..6311+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGCTCTGCGCCGTGCCAAAAAGCCGCCTGCAAAGTAAGTACTCAA
CACCCCGCGAGTACAAATTTGGTGTTTGAGTGAGCGTAGTGACAAACATT
ACGTCCCGATCGTTAGACACGCGCCTATCGAAACTCGATGACGACAGTTA
GTGGCCCCGATTTATTCCGAATCGTCATTCTTGCATCCGTTCGGTCACGT
CTTTGTACTCCAGGGATGCTTCTTTGACACGCAGCTACACTTCGATGCTA
GAGGATTTCGTTATCCTTGCTGGTCAGGTCCACAAGGCGGACACTAGCTG
CGGTGGGCCGCTTTCCACACACGGCCCGGATGCAGAGCGTTCCGACGCGG
TCGGGATGAAGTGCGTTTGCCTAGGCTGTGGTGCCAACTTCCGCCGACTG
AACATAGGGGGGAACAGACTCAGTCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9851:5885..6311+

>mRNA_S-dermatodea_contig9851.17820.1 ID=mRNA_S-dermatodea_contig9851.17820.1|Name=mRNA_S-dermatodea_contig9851.17820.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig9851:5885..6311+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGCTCTGCGCCGTGCCAAAAAGCCGCCTGCAAAATGGAAGCTCTG
CGCCGTGCCAAAAAGCCGCCTGCAAAGGATGCTTCTTTGACACGCAGCTA
CACTTCGATGCTAGAGGATTTCGTTATCCTTGCTGGTCAGGTCCACAAGG
CGGACACTAGCTGCGGTGGGCCGCTTTCCACACACGGCCCGGATGCAGAG
CGTTCCGACGCGGTCGGGATGAAGTGCGTTTGCCTAGGCTGTGGTGCCAA
CTTCCGCCGACTGAACATAGGGGGGAACAGACTCAGTCGCGGATGCTTCT
TTGACACGCAGCTACACTTCGATGCTAGAGGATTTCGTTATCCTTGCTGG
TCAGGTCCACAAGGCGGACACTAGCTGCGGTGGGCCGCTTTCCACACACG
GCCCGGATGCAGAGCGTTCCGACGCGGTCGGGATGAAGTGCGTTTGCCTA
GGCTGTGGTGCCAACTTCCGCCGACTGAACATAGGGGGGAACAGACTCAG
TCGC
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