mRNA_S-dermatodea_contig983.17805.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig983.17805.1
Unique NamemRNA_S-dermatodea_contig983.17805.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: A0A6H5L173_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L173_9PHAE)

HSP 1 Score: 461 bits (1186), Expect = 1.150e-153
Identity = 263/359 (73.26%), Postives = 274/359 (76.32%), Query Frame = 1 
Query:   28 GVARD--GGRVPAITVARHTRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKGAFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYRNALFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNDGDAADATEQAGQESGCL-----------------FEDGDVDCLGAGGLKDDDDESVKTEACSEGSGESSLGEESLASREEMELDLEF 1047
            G+A D  G +V  I VARHTRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERP+AVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFH+RLYRSSCRQVKGAFLKDLSVLG+ESTDMSRTVLVDNNPLSFICQPTNG+LVASFYDDPNDTALASVMQLIRHLD AGDVRPILKDMFRLDTLL EYR ALFD              XXXXXXX              XXX                                      +  DV+CL      DDDDESVKTEACSEGSG+SSLG+ESL SREEMEL+LEF
Sbjct:   98 GMASDQQGKQVGPIVVARHTRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPNAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQVKGAFLKDLSVLGVESTDMSRTVLVDNNPLSFICQPTNGILVASFYDDPNDTALASVMQLIRHLDQAGDVRPILKDMFRLDTLLGEYRAALFDDEDDADVDVDCILDXXXXXXXLLEGCLEAGQQERTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQGEDVECL----KDDDDDESVKTEACSEGSGDSSLGDESLTSREEMELELEF 452
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: D7FM26_ECTSI (Putative nuclear LIM interactor-interacting protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM26_ECTSI)

HSP 1 Score: 433 bits (1113), Expect = 1.330e-144
Identity = 262/328 (79.88%), Postives = 271/328 (82.62%), Query Frame = 1 
Query:  109 MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKGAFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYRNALFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNDGDAADATE---------------QAGQESGCLFEDGDVDCLGAGGLKDDDDESVKTEACSEGSGESSLGEESLASREEMELDLEF 1047
            MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFH+RLYRSSCRQVKGAFLKDLSVLG+ESTDMSRTVLVDNNPLSFICQPTNG+LVASFYDDPNDTALASVMQLIRHLD AGDVRPILKDMFRLDTLL EYR ALFD           XXXXXXXXXXXXXXXXXXXXXXXXXXX                           A  +     +  DV+CL      DDDDESVKTEACSEGSG+SSLG+ESL SREEMEL+LEF
Sbjct:    1 MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQVKGAFLKDLSVLGVESTDMSRTVLVDNNPLSFICQPTNGILVASFYDDPNDTALASVMQLIRHLDQAGDVRPILKDMFRLDTLLGEYRTALFDDDDDADVDCILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSANGDGQQQLQGEDVECL----KDDDDDESVKTEACSEGSGDSSLGDESLTSREEMELELEF 324
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: A0A835Z333_9STRA (NLI interacting factor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z333_9STRA)

HSP 1 Score: 272 bits (696), Expect = 3.940e-84
Identity = 137/196 (69.90%), Postives = 157/196 (80.10%), Query Frame = 1 
Query:  109 MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKGAFLKDLSVLGIE-STDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAE 693
            +TVVLDMDECLLHSKFHG GA S  YRQ E+RP+ V EVNSFW+ALDDG  AQVN RPGL  FLE LA+  + +VFTAAMPDYAGPVLD IDP G L  +RLYR+SCRQV+G FLKDLS LG   +T+  R VL+DNNP SF+CQPTNG+LV SFYDD  DTALA VMQL+R L++  DVRPIL+DMFRL+ LL E
Sbjct:    1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDG-VAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 195
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: A0A836C7A9_9STRA (NLI interacting factor-like phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7A9_9STRA)

HSP 1 Score: 273 bits (699), Expect = 2.970e-83
Identity = 138/203 (67.98%), Postives = 163/203 (80.30%), Query Frame = 1 
Query:  106 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKGAFLKDLSVLG-IESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYRNALF 711
            ++TV+LDMDECLLHSKFHG G+    YRQ EERP+ + EVNSF + LDDG  AQVN RPGL  FLE LA+  + +VFTAAMPDYAGPVLD +DP G L  +RLYRSSCRQV+GAFLKDLSVLG +      R VL+DNNP SF+CQPTNG+LV SFYDD  DTALASV+QL++HL++A DVRPIL+DMFRL++LL EYR  LF
Sbjct:   28 RLTVILDMDECLLHSKFHGLGSID--YRQQEERPEDIGEVNSFCIPLDDG-VAQVNIRPGLHDFLEELAKTCDVVVFTAAMPDYAGPVLDKLDPTGRLISKRLYRSSCRQVRGAFLKDLSVLGPVFDKHPGRCVLLDNNPCSFLCQPTNGILVTSFYDDAEDTALASVLQLVQHLEHAPDVRPILRDMFRLESLLREYRAMLF 227
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: A0A836CB86_9STRA (Putative CTD small phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB86_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.890e-60
Identity = 110/199 (55.28%), Postives = 142/199 (71.36%), Query Frame = 1 
Query:  106 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKG-AFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYR 699
            K+TVVLD+DECL+HS F       + YRQ E RP+ +N V+S  + L   +   VN+RPGL  FLE L+ DY+ +VFTA   +YA  VLD IDP+GT FH RLYR SCRQ +G  +LKDL     E+  + RTVLVDN+PLSFICQP+NG+LV+S+YDDP+D AL+SV++LIRHLD   DVRP L  +F L+ +L EY+
Sbjct:   17 KLTVVLDLDECLVHSVFPN----GDKYRQSEARPENINLVDSMHLVLGGVEPVVVNRRPGLTKFLEQLSVDYHVVVFTAGRKEYAEEVLDAIDPQGTFFHHRLYRCSCRQARGNIYLKDLDRPVGEA--LERTVLVDNSPLSFICQPSNGILVSSWYDDPHDNALSSVLKLIRHLDACDDVRPTLTALFGLEPVLKEYQ 209
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: H3GXJ8_PHYRM (FCP1 homology domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3GXJ8_PHYRM)

HSP 1 Score: 203 bits (516), Expect = 3.600e-57
Identity = 108/212 (50.94%), Postives = 142/212 (66.98%), Query Frame = 1 
Query:   76 HTRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNE-VNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKGAFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYRNAL 708
            HTR AP +  ++ +VLDMDECL+HSKF         YRQ E RP+ + +  +SF + +DDG+ A VNKRPGLD FLE  A+ Y+  VFTA +  Y  P+LD +DPKG LF  R +R SC+Q KG FLKDLSV  +   D+SR +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   33 HTR-APCE--RLALVLDMDECLVHSKFQN----EVEYRQSEFRPEQLEDFADSFEIVMDDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDELDPKGNLFAGRFFRESCQQRKGMFLKDLSV--VRGGDLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVLASLQEVEDVRPRLHQLFRLADLLAEHQRVI 235
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: A0A662Y5D0_9STRA (FCP1 homology domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A662Y5D0_9STRA)

HSP 1 Score: 203 bits (516), Expect = 3.710e-57
Identity = 106/212 (50.00%), Postives = 140/212 (66.04%), Query Frame = 1 
Query:   76 HTRLAPYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEV-NSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKGAFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYRNAL 708
            H R A     ++ +VLDMDECL+HSKF         YRQ E RP+ +    +SF + +DDG+ A VNKRPGLD FLE  A+ ++  VFTA +  Y  P+LD +DPKG LF  R +R+SC+Q KG FLKDLSV+    TD+SR +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   32 HVRAAGAGQERLALVLDMDECLVHSKFQN----EVEYRQSEYRPEELEAYGDSFEIVMDDGERAVVNKRPGLDRFLEEAAKHFDVYVFTAGLEAYGKPILDELDPKGNLFAGRFFRASCQQRKGMFLKDLSVV---RTDLSRVILVDNNPVSFLLQPSNGIPVPSFYDDVNDRTLDSLTKVLASLQEVDDVRPRLHQLFRLADLLAEHQRVI 236
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: A0A3M6VFT3_9STRA (FCP1 homology domain-containing protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VFT3_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.930e-55
Identity = 101/202 (50.00%), Postives = 135/202 (66.83%), Query Frame = 1 
Query:  106 KMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNE-VNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKGAFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYRNAL 708
            ++ +VLDMDECL+HSKF         YRQ E RP+ + E ++SF + ++DG+ A VNKRPGLD FLE  A+ Y+  VFTA +  Y  P+LD +DPKG LF    +R SC+Q KG FLKDLSV  I   D+SR +LVDNNP+SF+ QP+NG+ V SFYDD  D  L S+ +++  +    DVRP L  +FRL  LLAE++  +
Sbjct:   40 RIALVLDMDECLVHSKFQN----EVEYRQNEYRPEQLEEYIDSFEIVMEDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDVLDPKGNLFAGHFFRESCKQRKGMFLKDLSV--IRDGDLSRVILVDNNPVSFLMQPSNGIPVPSFYDDTKDRTLESLSKVLASMQEVEDVRPRLHQLFRLADLLAEHQRVI 235
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: K3WRS1_GLOUD (FCP1 homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRS1_GLOUD)

HSP 1 Score: 196 bits (498), Expect = 2.830e-54
Identity = 101/208 (48.56%), Postives = 140/208 (67.31%), Query Frame = 1 
Query:   88 APYKPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVN-SFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSCRQVKGAFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYRNAL 708
            +P +  ++ +VLDMDECL+HSKF+        YRQ E RP A+ + + SF + +DDG+ A V+KRPGLD FLE  ++ ++  VFTA +  Y  P+LD +DPKGTLF  R +R SC+Q KG FLKDL V+     D+S+ +LVDNNP+SF+ QP+NG+ V SFYDD ND  L S+ +++  L    DVRP L  +FRL  LLAE++  +
Sbjct:   58 SPVEEERIALVLDMDECLVHSKFYN----EVEYRQSEYRPTALAQYDDSFEIVMDDGERAIVHKRPGLDKFLEEASKHFDVYVFTAGLEAYGKPILDELDPKGTLFTGRFFRESCQQRKGMFLKDLRVV---RKDLSKVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLTKVLTSLRELDDVRPRLHQLFRLADLLAEHQRMI 258
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BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Match: A0A7S2PH30_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PH30_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.910e-54
Identity = 105/227 (46.26%), Postives = 144/227 (63.44%), Query Frame = 1 
Query:   31 VARDGGRVPAITVARHTRLAPY--KPGKMTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNE--VNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQRLYRSSC--RQVKGAFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVLVASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAE 693
            + ++GG     ++ RH+R      +   + +VLDMDECL+HS+F     ++  YRQ E RP A++   V SF + L DGD  QVNKRPGLD FL+ +   + T +FTAAM  YA PVLD +DP+ T+  +R YR SC      G ++KDLS + ++  D  R VLVDNNPLSF+ QP+NG+LV++FYD P+D  L +V+ L+  L+   DVRP L DMF L   LAE
Sbjct:   14 IVKNGG-----SLIRHSRFVGSCRRKSDLVLVLDMDECLIHSQF----LSNTEYRQDEYRPSAISSKSVESFRIELPDGDLVQVNKRPGLDEFLQTVTSKFETHIFTAAMEVYASPVLDSLDPENTMLGKRFYRESCSLNSELGVYVKDLSKI-LQDVDHKRVVLVDNNPLSFLAQPSNGILVSNFYDSPDDITLKAVVDLLERLETKNDVRPTLDDMFGLSAALAE 230
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig983.17805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L173_9PHAE1.150e-15373.26FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
D7FM26_ECTSI1.330e-14479.88Putative nuclear LIM interactor-interacting protei... [more]
A0A835Z333_9STRA3.940e-8469.90NLI interacting factor (Fragment) n=1 Tax=Tribonem... [more]
A0A836C7A9_9STRA2.970e-8367.98NLI interacting factor-like phosphatase-domain-con... [more]
A0A836CB86_9STRA3.890e-6055.28Putative CTD small phosphatase-like protein n=1 Ta... [more]
H3GXJ8_PHYRM3.600e-5750.94FCP1 homology domain-containing protein n=12 Tax=P... [more]
A0A662Y5D0_9STRA3.710e-5750.00FCP1 homology domain-containing protein n=4 Tax=Pe... [more]
A0A3M6VFT3_9STRA1.930e-5550.00FCP1 homology domain-containing protein n=9 Tax=Pe... [more]
K3WRS1_GLOUD2.830e-5448.56FCP1 homology domain-containing protein n=1 Tax=Gl... [more]
A0A7S2PH30_9STRA3.910e-5446.26Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig983contigS-dermatodea_contig983:2432..8189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score435.3
Seed ortholog evalue2.5e-119
Seed eggNOG ortholog2880.D7FM26
KEGG koko:K15731,ko:K17616
GOsGO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNLI interacting factor
Ec32 orthologEc-01_010410.1
Exons3
Model size2044
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig983.17805.1prot_S-dermatodea_contig983.17805.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig983 3426..8081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.730817-UTR-S-dermatodea_contig983:2431..34251622925433.730817-UTR-S-dermatodea_contig983:2431..3425Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig983 2432..3425 -
1694079930.4689374-UTR-S-dermatodea_contig983:2431..34251694079930.4689374-UTR-S-dermatodea_contig983:2431..3425Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig983 2432..3425 -
1622925433.782231-UTR-S-dermatodea_contig983:8081..81891622925433.782231-UTR-S-dermatodea_contig983:8081..8189Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig983 8082..8189 -
1694079930.5138197-UTR-S-dermatodea_contig983:8081..81891694079930.5138197-UTR-S-dermatodea_contig983:8081..8189Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig983 8082..8189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.7429624-CDS-S-dermatodea_contig983:3425..40401622925433.7429624-CDS-S-dermatodea_contig983:3425..4040Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig983 3426..4040 -
1694079930.481935-CDS-S-dermatodea_contig983:3425..40401694079930.481935-CDS-S-dermatodea_contig983:3425..4040Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig983 3426..4040 -
1622925433.7561722-CDS-S-dermatodea_contig983:6906..70741622925433.7561722-CDS-S-dermatodea_contig983:6906..7074Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig983 6907..7074 -
1694079930.4921956-CDS-S-dermatodea_contig983:6906..70741694079930.4921956-CDS-S-dermatodea_contig983:6906..7074Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig983 6907..7074 -
1622925433.7687006-CDS-S-dermatodea_contig983:7922..80811622925433.7687006-CDS-S-dermatodea_contig983:7922..8081Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig983 7923..8081 -
1694079930.5029101-CDS-S-dermatodea_contig983:7922..80811694079930.5029101-CDS-S-dermatodea_contig983:7922..8081Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig983 7923..8081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig983.17805.1

>prot_S-dermatodea_contig983.17805.1 ID=prot_S-dermatodea_contig983.17805.1|Name=mRNA_S-dermatodea_contig983.17805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=314bp
MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGD
TAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHQ
RLYRSSCRQVKGAFLKDLSVLGIESTDMSRTVLVDNNPLSFICQPTNGVL
VASFYDDPNDTALASVMQLIRHLDNAGDVRPILKDMFRLDTLLAEYRNAL
FDDDDDEEAAALLEGGLEEGSGEDSPVTEEEVLAVSAAAASNDGDAADAT
EQAGQESGCLFEDGDVDCLGAGGLKDDDDESVKTEACSEGSGESSLGEES
LASREEMELDLEF*
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mRNA from alignment at S-dermatodea_contig983:2432..8189-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig983.17805.1 ID=mRNA_S-dermatodea_contig983.17805.1|Name=mRNA_S-dermatodea_contig983.17805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5758bp|location=Sequence derived from alignment at S-dermatodea_contig983:2432..8189- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAACTCGCGCCGCGAGACGACCCGTGCGGCGTCGCACGCGATGGGGGAAG
AGTGCCGGCGATCACGGTCGCACGGCACACGCGGCTAGCGCCGTACAAGC
CGGGGAAAATGACGGTCGTGTTAGATATGGACGAGTGCCTCTTGCACAGC
AAGTTCCACGGTCCTGGGGCGGCGTCCGAGGCGTACCGACAGCTGGAGGA
GCGCCCCGATGCGGTTAACGAGGTCAACAGCTTTTGGGTCGCTCTCGACG
ACGGAGACACTGCACAGGTATGCCAAATGTATACAAGTATATATCATATA
TATGAACGCATGCGAGAGACAAATAAATGTGTTGCGAAAAGCCCCCTTTA
TTATTTACATGAGCGTCTCAATTGTTGGTTTGTCCCCGCCTTTTATTTTT
GGAATACACGCGTGCCCTTCGGCGCCCCTCTCCATTTTGTGACGTCACCT
CTCTAGATGGTGCTTGCCTGCCCGTATCGCCACATTCGCTATGGGAACTG
TTGCTGCTGCGAGGTCTTCGAGGGCTGGTGCGGCAGGGCAACGCGAGACC
CGTCTCCGTGTGCTGTCCCAGCTCCCCTTAATCAACTGCTTTCACGAATA
AGGTTCCTAAAAAATGTCGCCCGATGTTTTTGGGTAGGGTGAAAATGTCA
ACGTCCCGCCTCTCCTATAGTTCGAGCTAGTTCGCGCCCATTCGGTCACC
TATGGGTCACACGAGTGCACCTTGAATGTCTCAAGGCAATGGGGTGGCGC
TGCGGCTGGCGTGGTTGAAGTGGACACGCCCCAGTGGTCATTCGAGTGCG
AGGCTAGATCGGGGGCATGCGTGTTATGCTCCCCCTGTCCCGCTCTTGTC
TCGTGTGTCGTTGTTGTCATCATACATGAGAGAGGGTTGCCCCTTGCTCT
CTCGTGCGAAGTTCGTTGTTTTTAATGATGGCATCATATAGACCACACTT
AATTTAAGAGAATATTATCATTATTTTTTCGCATTTGTGCGCAGGTTGCG
TTGCAGAGAGTATTTTGACTTGTATTTATTACTGTCGTCGTGCGTTCCCC
GAAAAAAATATGAAATGCATTCCACCACGCGCACGCACTGCACACACCCA
CCCACCACCCACCAGGTGAACAAACGGCCTGGTCTCGACCCCTTTCTCGA
GGCCTTGGCACGGGACTACAACACCATTGTCTTCACCGCCGCGATGCCTG
ATTACGCCGGGCCGGTGCTGGACTACATCGATCCGAAGGGCACGTTGTTC
CACCAGCGTCTCTACCGGAGCAGCTGCCGTCAGGTGCGTGCGTGAAGCAT
ACCAGTTGCCCAAATCCCTCCAAGTCCGTTGAGATTATAATTGTTCGACG
GCAGCCCTTCCTTGCTCATTTTTTAAGTAGTTTTGTCTCGACGGTCAAAG
TCGCTTTTTTTTTTGTGTTGTTTTTGGCGCGTCTCTGCGTCCCAGTGGCG
TATGGACTGCTTTTGGTCGCTGCAGTTGCGAGCGCTGCGAGGGGGGGAGT
CCAGCGACTCGTGTGGCTCGTTGTAATCTCAATTGTTCGACTTTTTTTCT
CGTGATCCAGTTCATATATACAAATATTAGGCTGGAATTGTTCGTGCTCT
CCCGTCTCCCACATAATAATTTATGCATGATATTATATTACAGGTTATTT
GTGTTTTGTGTTCTTTTCTTGTGGTTTTTTTCTGACTTTTTAATATTTTT
CTATATATTAATTTCCGGTACCTGCTGTAGCAGTTCCAGGTATATGATAT
ATGGCAAACCGTCTTGACGGTGTTTTCATGCGACTGCACAGCAAACACAG
ACAGGGATTGAGACGTTGAGGCTGAAACACTAGAGCATTGTTTGGCGTGC
GCGAGCGCCGTGTGTCTGCAACATTCATTTCGTTTTTGTTTTTGCGACGT
GTGTGCGCGCGTGTGTGTGGCCAGGTTACAAATTTAATTCAACACCACTT
CATTTTTGTTTTCTTGTGAAGCCCCCCGTCATCCATGCACCAGGTGCTGC
GGTGCTGCTGCTGCCTTCTTCCGTTGGTTCAACATACTTCACGTTTGATA
CAGACAGTCTCACATCTTGTCATAAAGTATTCCAATATTCCGGGATTTTA
TACTCTGTACACTCTTTTATCGTATCGTTTCTCGTTTCAGTTCTAATCCA
GAGGTCTTATTGGAAGAAGGGAACATGTGCCAGCCACTCCTTCTTCCGAG
ACTCGCACACCAACACTCGCACACCAACAAAAGGCCCGCGGCCGTACTTG
TTAGATGGTTGGGGGAGAGCCCAATAGACGGAATATGCATCATCTCTTTT
CGTGACGCGGCCGGAGGCTTCGTGAAGTCGTGTGCGTCGTGACGTGACAG
CAGGGCAGCTCTCTATTCATTATTCTTAATACTGGTGTTTGTTTTTTCGT
TGTTTGTTGCAGTATGATACCACAATATACTTAATATAGTATAATCGATA
GCCTCTGGGCTCCATCCACCCAGCCCACAACCTCTTGGTCTGTACAAGTA
TTAATAGTCGTATAATATGATATGGTATCTGATTTCACCTGCACATGGAG
TTGTACTTCTTACGTTTTATGATGCCCTTGATTACTCCCACCATTTATGC
GCATGCCGACACATACCATACATTCAAAAAGTCTGTTGTGAGTGGCCGGC
AGCGTTGAACTGCCTGTAGTTCACAATGCTTGCCCGGTACTTGGAAGAGC
TGCTGAATTTATAACCTGTTTTTGGCCAATATACCCCATACATACGATGT
CTGATTTGCGACGGAGTTTGTTGAACGCGGAGATATTATACGATACTGCT
GTCTGTATTATCGTACTTCGAAGTATTATTATTCCGTGTACCTGCAACTC
GTGTGATGGCCTGTCGTGGTATGTATCATACTAGATAATAAGATAGATTT
GACGATACGTTCCTAATCCTGAGGCTCTTATTCGCAGAACTTCATCCAGA
TGATACTCTACAGTATCTGGACTCGGTGTTCTTTCGCTGTGCTGTTTTCC
TATGGTTTGCAATTCCCTTCACAGCAGCCGTGCTTGAAATCGGCAAGAAA
GCACAATCAAGTAATTTCTTGGTTTTGCAAAAAAAAATGCCTCGCAGCAG
GGGGGCTATTTTGCTTTATTTTTTTTACACGTACCGCCTTCGCTCTATAG
AACTGGCTGTCAATTGTCCACGTGTGTCACTTATTTTTTATGTATGGAAG
CGCACGGGCTGTAAGTATATAGATGGGCGAGGCGTTGGCGTGTTCGCTCT
AAAACCCCGACTGTGTACGTGTTGCTGTTGTTGGCACAAATGAGACCGGC
TTGCTTTTCCGAGGTCCTTCCGTGGTCACAAGGAATCAGGTCATCCCATC
TCTCTTATCCCCGGTTCTCACCTTTGATTTTTATCGCGAATGGTTTGGGT
TTGGCACTCCCTCAGAACTCGCCGATTTCTCCTTTTTTTTTTTTGCTTAC
TCGCGCTTTCCACGGCGGAGGTTGATTTTGATTTGATTTGCACACGTATA
GCCGATAGGCTTAATCCGACCCAGCTTGTGGTCAGACACGCAAAGAGTCA
AGTAGAGAAAATATATATATATAAGTATCGACTCTGGCGGGATTAGAACC
CGGGTCCTCCGCCCACTGGGCTGTTGGTCAACCAGTCCAACCATGGGGCG
CGCGGTTAGTGTACACGTATCATATCATGTGTCGCTAATTTTTTTTTAAT
GAAAGCGCATGGGCTGTATATACGGGCGAGGCGTTATCGTTTTGATACTA
TTTTAACATAAAATGGGTACTTGTAGTGTCTTGTAGTTGTACATTTTCGC
CAGTCGTCGCCCGGGTCATTGCCGGCGCTTCCCCTTGTTTGCGGTCCGCA
CGATTCGGGGTCTTGGATAAATGCCAAGTCCATAAAGAGATTGAGGTAAC
GGTCCATACGCGGAATCGATTTTCACCAAAATTTGCGGGTGACAACGTTG
CGCGTACAGATGCAAAAAAAAAGTACAGTATGATACGCATAATAGTTTTA
CTCACAACTCCTGGTATCATACTGCTGTCGTACATGTGAACATATATGAT
TCCTCACGCAGGTTCACCCTTCTTGTCTTTTCGCCGCCTCGAACTTAACT
CCCCTCGCTCGCCCTTGTCTTGTTGTGTGTCTGTTTCCCCATCGAGTAGG
TAAAGGGCGCGTTCCTGAAGGACCTGTCGGTGCTTGGCATCGAGTCGACG
GATATGAGCCGGACCGTGCTGGTCGACAACAACCCTCTATCGTTCATCTG
CCAGCCGACGAACGGAGTCCTCGTGGCCTCATTCTACGACGACCCGAACG
ACACCGCCCTCGCGAGCGTCATGCAGCTCATCCGACACCTCGACAACGCG
GGCGACGTGCGTCCGATCCTGAAGGACATGTTCCGGCTCGACACGCTGCT
CGCCGAGTACCGAAACGCCCTCTTCGACGATGATGACGACGAGGAAGCCG
CCGCGCTCCTGGAAGGCGGTTTGGAAGAGGGGTCCGGGGAGGACAGCCCG
GTCACCGAGGAAGAAGTGCTAGCGGTTTCCGCGGCCGCCGCTTCGAACGA
TGGGGACGCAGCAGACGCAACAGAGCAGGCGGGGCAAGAGAGTGGGTGCT
TGTTCGAGGACGGTGACGTTGATTGCTTGGGTGCAGGGGGGTTGAAGGAT
GACGACGACGAGTCTGTGAAGACAGAGGCGTGTTCGGAGGGGTCCGGGGA
GTCGTCCTTGGGCGAGGAGTCGCTCGCGTCGCGGGAGGAGATGGAGCTGG
ACCTTGAGTTCTAGATATGAAAAAACAGAAACGAGTCCTCCGCCCCCCCG
CCCTCGCCCCCCTCCTCCCGCAAGTATTTCTCTGATTAGAGCAGGACAAA
AATGTGGTTTTTTCTTCTTTTCTTTCTTGGTTGGTGGGTGGTGCCCAGCG
TCGTCGTGTGAAGAGTTTGAGGTTTTGGTCCGTGGTTCCGTCCGTCCGTA
GGCGTTGGTCGTTTGTTATCTTCGGTTTGTGTTCGGATCTTCTCGTGGTG
GTGTTTTCGTTTGTTCATCTCTCGTCGTCGTCCTCCAATTTTTTTTGTCC
TTTTTTTAAAATTGATGTGGAATTATATCCTGTGTCCCCGCCCCGCAAAC
GCCTCCCCCACCCTTGCCCCCCATTTTTTTTTTTGCTTGCCCATCCGTTT
TGCGAATGCTTTACGCCATGCGCCGTTGTTGCTTTTCCTCTGGTCAAACC
TCTTGCTTTACGATTTGCACATCTTCCCCTACTTTATTTACCACCTCACG
CTCTCCCTCATACATGCGGGAGCAAGCGACGCCATGGTAGACTGATTTAG
ACGCTGTCGTGGCTTTGCCCTTCGAGCGGCCAGTATATTGGCGATTGTTT
TTGAGCGAAGGGGCTGGGTACGGGTCGCAAATAGTACAAAATCGTGAGGC
AATGGTACGGTGGCCGGAGCGAGGCGATTCTCTCTTCTCTCTTCTGAGGG
TTTCCCTCGGGAGGGGTGAAGGGTCGTAGGGCGCTGTTCTTGCATTTTGG
TGTCGCGAAAGTGTTTTTTGTCGGATTTTTTTCTATATGCTATTTTTGGC
GACTGCTGTGTTGTCGCCGGGCGAGGGCCGTGGTGGACAAGACACACTTG
AGTTACATTTTGTTGGTCGCGAAAAGCAGACATTAAACGATGTGCAGGTG
ATTTACCGTTCTCACACGGAAGAGCGAGACGCGGAGATCTTATTATCATA
GCCATTCTTTTTTGCGTTTCTCAAGACAGGACGGGGGAGTTGGGGGTTTT
GATGGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig983:2432..8189-

>mRNA_S-dermatodea_contig983.17805.1 ID=mRNA_S-dermatodea_contig983.17805.1|Name=mRNA_S-dermatodea_contig983.17805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at S-dermatodea_contig983:2432..8189- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGTCGTGTTAGATATGGACGAGTGCCTCTTGCACAGCAAGTTCCA
CGGTCCTGGGGCGGCGTCCGAGGCGTACCGACAGCTGGAGGAGCGCCCCG
ATGCGGTTAACGAGGTCAACAGCTTTTGGGTCGCTCTCGACGACGGAGAC
ACTGCACAGATGACGGTCGTGTTAGATATGGACGAGTGCCTCTTGCACAG
CAAGTTCCACGGTCCTGGGGCGGCGTCCGAGGCGTACCGACAGCTGGAGG
AGCGCCCCGATGCGGTTAACGAGGTCAACAGCTTTTGGGTCGCTCTCGAC
GACGGAGACACTGCACAGGTGAACAAACGGCCTGGTCTCGACCCCTTTCT
CGAGGCCTTGGCACGGGACTACAACACCATTGTCTTCACCGCCGCGATGC
CTGATTACGCCGGGCCGGTGCTGGACTACATCGATCCGAAGGGCACGTTG
TTCCACCAGCGTCTCTACCGGAGCAGCTGCCGTCAGGTGAACAAACGGCC
TGGTCTCGACCCCTTTCTCGAGGCCTTGGCACGGGACTACAACACCATTG
TCTTCACCGCCGCGATGCCTGATTACGCCGGGCCGGTGCTGGACTACATC
GATCCGAAGGGCACGTTGTTCCACCAGCGTCTCTACCGGAGCAGCTGCCG
TCAGGTAAAGGGCGCGTTCCTGAAGGACCTGTCGGTGCTTGGCATCGAGT
CGACGGATATGAGCCGGACCGTGCTGGTCGACAACAACCCTCTATCGTTC
ATCTGCCAGCCGACGAACGGAGTCCTCGTGGCCTCATTCTACGACGACCC
GAACGACACCGCCCTCGCGAGCGTCATGCAGCTCATCCGACACCTCGACA
ACGCGGGCGACGTGCGTCCGATCCTGAAGGACATGTTCCGGCTCGACACG
CTGCTCGCCGAGTACCGAAACGCCCTCTTCGACGATGATGACGACGAGGA
AGCCGCCGCGCTCCTGGAAGGCGGTTTGGAAGAGGGGTCCGGGGAGGACA
GCCCGGTCACCGAGGAAGAAGTGCTAGCGGTTTCCGCGGCCGCCGCTTCG
AACGATGGGGACGCAGCAGACGCAACAGAGCAGGCGGGGCAAGAGAGTGG
GTGCTTGTTCGAGGACGGTGACGTTGATTGCTTGGGTGCAGGGGGGTTGA
AGGATGACGACGACGAGTCTGTGAAGACAGAGGCGTGTTCGGAGGGGTCC
GGGGAGTCGTCCTTGGGCGAGGAGTCGCTCGCGTCGCGGGAGGAGATGGA
GCTGGACCTTGAGTTCTAGGTAAAGGGCGCGTTCCTGAAGGACCTGTCGG
TGCTTGGCATCGAGTCGACGGATATGAGCCGGACCGTGCTGGTCGACAAC
AACCCTCTATCGTTCATCTGCCAGCCGACGAACGGAGTCCTCGTGGCCTC
ATTCTACGACGACCCGAACGACACCGCCCTCGCGAGCGTCATGCAGCTCA
TCCGACACCTCGACAACGCGGGCGACGTGCGTCCGATCCTGAAGGACATG
TTCCGGCTCGACACGCTGCTCGCCGAGTACCGAAACGCCCTCTTCGACGA
TGATGACGACGAGGAAGCCGCCGCGCTCCTGGAAGGCGGTTTGGAAGAGG
GGTCCGGGGAGGACAGCCCGGTCACCGAGGAAGAAGTGCTAGCGGTTTCC
GCGGCCGCCGCTTCGAACGATGGGGACGCAGCAGACGCAACAGAGCAGGC
GGGGCAAGAGAGTGGGTGCTTGTTCGAGGACGGTGACGTTGATTGCTTGG
GTGCAGGGGGGTTGAAGGATGACGACGACGAGTCTGTGAAGACAGAGGCG
TGTTCGGAGGGGTCCGGGGAGTCGTCCTTGGGCGAGGAGTCGCTCGCGTC
GCGGGAGGAGATGGAGCTGGACCTTGAGTTCTAG
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