mRNA_S-dermatodea_contig98295.17802.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig98295.17802.1
Unique NamemRNA_S-dermatodea_contig98295.17802.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.950e-23
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 RDELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            RDELY LL ++RRAT  E+KRAYRNKSLQMHPDKLNQRGQEVTE+DRANFQKMK AYDV
Sbjct:   19 RDELYSLLDLDRRATPAEVKRAYRNKSLQMHPDKLNQRGQEVTEQDRANFQKMKSAYDV 77          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A1E7FJY6_9STRA (J domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJY6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.430e-14
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   13 YQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            YQLL +ER AT  EIK+AY+ +SLQMHPDKL QRG+ VTEE +A F +MK AY++
Sbjct:    2 YQLLDIERDATPEEIKKAYKRQSLQMHPDKLAQRGEVVTEELQAKFTRMKEAYEI 56          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A7S2RGW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RGW1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.940e-13
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 RDELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            ++  Y LL VE+ AT  EIKRAY+ +SLQMHPDKL Q+G+ VTE D+A F +MK AY+V
Sbjct:    5 KENFYDLLGVEKDATQDEIKRAYKRQSLQMHPDKLAQKGRTVTEVDQARFTRMKEAYEV 63          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A7S1YWS1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWS1_TRICV)

HSP 1 Score: 70.5 bits (171), Expect = 1.120e-12
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 DELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            +  Y LL VE  AT  E+KRAY+ +SL+MHPDKL QRG+EVT ED+A F +MK AY+V
Sbjct:   25 ENFYDLLGVENDATPEELKRAYKRRSLEMHPDKLAQRGREVTPEDQARFTRMKEAYEV 82          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A7S4UY41_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UY41_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.110e-12
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    4 DELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            ++ Y+LL +E  A+  EIKRAY+ +SLQMHPDKL QRG++VTE D+A F +MK AY+V
Sbjct:   24 EDFYELLGLEHDASPEEIKRAYKRQSLQMHPDKLAQRGKQVTEADQARFTRMKEAYEV 81          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A7S0BVJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVJ0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.670e-12
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    7 ELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            + Y++L ++   +  EIKRAY+ +SL MHPDKL Q+GQ VT++D+A FQ+MK AY+V
Sbjct:   30 DFYEMLMIDNDVSQDEIKRAYKRQSLMMHPDKLAQKGQAVTDDDQARFQRMKDAYEV 86          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A448ZRQ1_9STRA (J domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRQ1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-11
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   13 YQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYD 174
            Y LL VE  AT  +IKRAY+ +SLQMHPDKL QRG+ VT+EDRA F +MK AY+
Sbjct:   30 YGLLGVESDATPDQIKRAYKRRSLQMHPDKLAQRGKPVTDEDRARFTRMKDAYE 83          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A7S2M6Z8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M6Z8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.560e-11
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 DELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            +  Y LL+V++ AT  E+KRAY+ +SLQMHPDKL Q+G+ VT EDR  F +M+ AY+V
Sbjct:   24 ESFYDLLSVDKHATQDELKRAYKRQSLQMHPDKLAQKGKSVTAEDRDRFTRMRHAYEV 81          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A7S4JN11_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JN11_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-11
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 DELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            +  Y +L ++  AT  EIK+AY+ +SL+MHPDKL QRG+EVT ED+A F +MK AY++
Sbjct:   26 ETFYSILGIDDDATPEEIKKAYKRRSLEMHPDKLAQRGKEVTPEDQARFTRMKEAYEI 83          
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Match: A0A7R9ZE87_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZE87_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.750e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    4 DELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANFQKMKGAYDV 177
            +  Y LL V+  AT  EIK+AY+ +SL MHPDKL QRG+EVT ED+  F +MK AY++
Sbjct:   26 ENFYTLLGVDADATPDEIKKAYKRRSLVMHPDKLAQRGKEVTPEDQERFTRMKEAYEI 83          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig98295.17802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K446_9PHAE1.950e-2384.75J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A1E7FJY6_9STRA6.430e-1463.64J domain-containing protein (Fragment) n=1 Tax=Fra... [more]
A0A7S2RGW1_9STRA2.940e-1359.32Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1YWS1_TRICV1.120e-1260.34Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4UY41_9STRA2.110e-1258.62Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0BVJ0_9STRA2.670e-1252.63Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A448ZRQ1_9STRA1.000e-1164.81J domain-containing protein n=1 Tax=Pseudo-nitzsch... [more]
A0A7S2M6Z8_9STRA2.560e-1155.17Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4JN11_9STRA3.510e-1153.45Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9ZE87_9STRA4.750e-1155.17Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig98295contigS-dermatodea_contig98295:117..305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1e-19
Seed eggNOG ortholog2880.D7G6F0
KEGG koko:K10752
KEGG Pathwayko04218,map04218
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.6229806-CDS-S-dermatodea_contig98295:116..3051622925433.6229806-CDS-S-dermatodea_contig98295:116..305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98295 117..305 +
1694079930.4136245-CDS-S-dermatodea_contig98295:116..3051694079930.4136245-CDS-S-dermatodea_contig98295:116..305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98295 117..305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig98295.17802.1prot_S-dermatodea_contig98295.17802.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig98295 117..305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig98295.17802.1

>prot_S-dermatodea_contig98295.17802.1 ID=prot_S-dermatodea_contig98295.17802.1|Name=mRNA_S-dermatodea_contig98295.17802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
RDELYQLLAVERRATAVEIKRAYRNKSLQMHPDKLNQRGQEVTEEDRANF
QKMKGAYDVSLR*
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mRNA from alignment at S-dermatodea_contig98295:117..305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig98295.17802.1 ID=mRNA_S-dermatodea_contig98295.17802.1|Name=mRNA_S-dermatodea_contig98295.17802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at S-dermatodea_contig98295:117..305+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGATGAGTTGTACCAGCTGCTGGCGGTGGAGCGGCGGGCGACGGCTGT GGAGATAAAGCGAGCCTATCGAAACAAGTCTTTGCAGATGCACCCGGACA AGCTCAACCAGCGTGGGCAGGAAGTGACGGAGGAGGACAGGGCTAACTTT CAGAAGATGAAGGGGGCATACGACGTGAGTCTCCGTTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig98295:117..305+

>mRNA_S-dermatodea_contig98295.17802.1 ID=mRNA_S-dermatodea_contig98295.17802.1|Name=mRNA_S-dermatodea_contig98295.17802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig98295:117..305+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGATGAGTTGTACCAGCTGCTGGCGGTGGAGCGGCGGGCGACGGCTGT
GGAGATAAAGCGAGCCTATCGAAACAAGTCTTTGCAGATGCACCCGGACA
AGCTCAACCAGCGTGGGCAGGAAGTGACGGAGGAGGACAGGGCTAACTTT
CAGAAGATGAAGGGGGCATACGACGTGAGTCTCCGTTAGAGAGATGAGTT
GTACCAGCTGCTGGCGGTGGAGCGGCGGGCGACGGCTGTGGAGATAAAGC
GAGCCTATCGAAACAAGTCTTTGCAGATGCACCCGGACAAGCTCAACCAG
CGTGGGCAGGAAGTGACGGAGGAGGACAGGGCTAACTTTCAGAAGATGAA
GGGGGCATACGACGTGAGTCTCCGTTAG
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