mRNA_S-dermatodea_contig9826.17800.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9826.17800.1
Unique NamemRNA_S-dermatodea_contig9826.17800.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: D8LL96_ECTSI (GPN-loop GTPase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL96_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.380e-54
Identity = 96/119 (80.67%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:    7 GGRRRVKG-RFHKMTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYILGAHDTAI-AQGASAA-GSVSNLFRTAFSDTHEPMFEKVGSVQERYMPETYGSVPPEL--LMNG 348
            GGRRR +  RF+KMTEEICDVVDSYGLVCFYPL+IQDAETVGRVL+Q+DKCNGY+LGA DTA  A GA A  GSVS+LFRTAFSDTHEPMFEKVGSVQERYMP+TYG+ PPEL  +MNG
Sbjct:  159 GGRRRGRNERFYKMTEEICDVVDSYGLVCFYPLNIQDAETVGRVLSQIDKCNGYMLGARDTAAPAAGAGAGEGSVSSLFRTAFSDTHEPMFEKVGSVQERYMPDTYGAAPPELELMMNG 277
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: A0A6H5KRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ6_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 6.490e-49
Identity = 98/143 (68.53%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:    1 SEGGRRRVKG-RFHKMTEEICDVVDSYGLVCFYPLSIQ----------------------DAETVGRVLAQVDKCNGYILGAHDTAI-AQGASAA-GSVSNLFRTAFSDTHEPMFEKVGSVQERYMPETYGSVPPEL--LMNG 348
            S GGRRR +  RF+KMTEEICDVVDSYGLVCFYPL+IQ                      DAETVGRVL+Q+DKCNGY+LGAHDTA  A GA A  GSVS+LFRTAFSDTHEPMFEKVGSVQERYMP+TYG+ PPEL  +MNG
Sbjct:  310 SGGGRRRGRNERFYKMTEEICDVVDSYGLVCFYPLNIQXXXXXXXPRSSSAGHPCVNVKQDAETVGRVLSQIDKCNGYMLGAHDTAAPAAGAGAGEGSVSSLFRTAFSDTHEPMFEKVGSVQERYMPDTYGAAPPELELMMNG 452
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: A0A7S2PRX1_9STRA (GPN-loop GTPase 2 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRX1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.190e-17
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:   13 RRRVK-GRFH----KMTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYILGAHDTAIAQGASAAGSVSNLFRTAF-SDTHEPMFEKVGSVQERYMPE 309
            R++V+ G+FH    K+  E+CD+++ + LV F PL+IQDAE+VGRV+A++DK NGY+ G ++    Q   +  +VS+LF+ A  +D  E MFE+  SVQERYM E
Sbjct:   48 RQKVRNGKFHRKHRKLHSELCDIIEDFSLVSFLPLNIQDAESVGRVVARIDKANGYVFGLNELKN-QEKQSNNNVSHLFQCAAQADDGEWMFEQALSVQERYMDE 151
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: A0A836C9S8_9STRA (GPN-loop GTPase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9S8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.530e-15
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:    4 EGGRRRVKG-----RFHKMTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYILGAHDTAIA--QGASAAGSVSNLFRTAFSDTHEPMFEKVGSVQERYMPETYG 318
            +G   R +G     +  ++T EICDVV+S+GLV F  L IQD E+VGRVL+++DK NGY++ +   A A  QG     + + LF++AFS  +E  +E + SV+ER+M  T G
Sbjct:  232 QGAHERPQGDATSKKLSRLTREICDVVESFGLVSFTTLDIQDGESVGRVLSKIDKANGYVVQSAAAAAAAQQGRDPRAAANALFQSAFSG-NEADYEHLASVRERHMGRTSG 342
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: K8Z7Y3_NANGC (GPN-loop GTPase 2 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7Y3_NANGC)

HSP 1 Score: 82.8 bits (203), Expect = 1.290e-14
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 SEGGRRRVKGRFHKMTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYILGAHDTAIAQGASAAGSVSNLFRTAFSDTHEPMFEKVGSVQERYM 303
            + GG R  + R+ K+ E +C++++ + LV F+PL+IQDA+ + RVLA VDKCNGY+LGA + A+      A  +S L   AF    +P  ++V  VQ+RYM
Sbjct:  260 TSGGGRFAR-RYRKLNEALCELIEDFSLVAFHPLNIQDADCIERVLAVVDKCNGYLLGAEERALVGREGEAALLSTLSGLAFRA--QPDADRVKDVQDRYM 357
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: A0A7S3PVG6_9STRA (GPN-loop GTPase 2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVG6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.200e-14
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:   19 RVKGRFHKMTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYIL-GAHDTAIAQGASAAGSVSNLFRTAFSDTHEPMFEKVGSVQERYMPETYGSVP 327
            R   R+HK+ +E+C+VVD YGL+ + PL I D  +VGR++A++DKCNGY+  G    +  +      +V ++F+ A    HE  +E++  VQER+M      VP
Sbjct:  297 RFYKRYHKLHKELCEVVDDYGLLSYIPLDINDGTSVGRLVARMDKCNGYVFTGRKKKSGKENDKEPSNVEDMFQCAMQMDHEWGYEQIADVQERFMHSFEEEVP 400
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: K0S203_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S203_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 3.670e-14
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:   31 RFHKMTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYILGAHDTAIAQGASAAGSVSNLFRTAFSDTHEPMFEKVGSVQERYM 303
            ++HK+  E+CD+V+ YGL+ F PLSIQDAE+VGRVLA++DKCNGY+     +A+A+  S   ++ ++F +A     E     +  VQERY+
Sbjct:  366 KYHKLHHELCDLVEDYGLLSFLPLSIQDAESVGRVLARIDKCNGYVFLRDASAMAK-KSDKSNMQDMFSSAMVADSEWGAGVLADVQERYL 455
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: A0A7S3XSY4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSY4_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 1.050e-12
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   43 MTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYILGAHDTAIAQGASAAGSVSNLFRTAFSDTHEPMFEKVGSVQERYM 303
            M   + +V++ YGLV ++PL+I+D ETVGR+LAQ+DK NG++       +          + +F++ F++T EP FE +G+VQERY+
Sbjct:    1 MHRGLAEVIEDYGLVEYWPLNIEDKETVGRILAQIDKSNGFVF------LQANQGNLSKANEMFKSCFNET-EPRFECMGTVQERYI 80
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: B8BYL6_THAPS (GPN-loop GTPase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYL6_THAPS)

HSP 1 Score: 74.7 bits (182), Expect = 3.510e-12
Identity = 30/46 (65.22%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   31 RFHKMTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYI 168
            ++HK+  E+CDVV+ +GL+ F PLSIQDAE+VGRVLA++DKCNGY+
Sbjct:  220 KYHKLHHELCDVVEDFGLLSFLPLSIQDAESVGRVLARIDKCNGYV 265
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BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Match: A0A7S2M7D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M7D9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-10
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   31 RFHKMTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYIL---GAHDTAIAQGASAAGS--VSNLFRTAFSDTHEPMFEKVGSVQERYM 303
            ++ K+  E+C+VV+ +GL+ F PLSIQDAE+VGRV+A+VDKCNGY+       D  + QG     +  + ++F +A     E     +  VQE+Y+
Sbjct:  338 KYRKLHHELCEVVEDFGLLSFLPLSIQDAESVGRVVARVDKCNGYVFVRENGGDAKMNQGDGVDNNDKMQDMFSSAMVADSEWGAGVLSDVQEKYL 433
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9826.17800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL96_ECTSI3.380e-5480.67GPN-loop GTPase 2 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KRZ6_9PHAE6.490e-4968.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PRX1_9STRA2.190e-1746.67GPN-loop GTPase 2 n=1 Tax=Leptocylindrus danicus T... [more]
A0A836C9S8_9STRA5.530e-1542.86GPN-loop GTPase 2 n=1 Tax=Tribonema minus TaxID=30... [more]
K8Z7Y3_NANGC1.290e-1442.57GPN-loop GTPase 2 n=4 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S3PVG6_9STRA2.200e-1438.46GPN-loop GTPase 2 n=1 Tax=Chaetoceros debilis TaxI... [more]
K0S203_THAOC3.670e-1445.05Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3XSY4_HETAK1.050e-1240.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B8BYL6_THAPS3.510e-1265.22GPN-loop GTPase 2 (Fragment) n=1 Tax=Thalassiosira... [more]
A0A7S2M7D9_9STRA1.700e-1039.58Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9826contigS-dermatodea_contig9826:1833..3511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog159749.K0S203
KEGG koko:K06883
EggNOG free text desc.Conserved hypothetical ATP binding protein
EggNOG OGs2XC1K@2836,COG1100@1,KOG1533@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-27_001810.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size775
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9826.17800.1prot_S-dermatodea_contig9826.17800.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9826 1875..3168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.4913971-UTR-S-dermatodea_contig9826:1832..18741622925433.4913971-UTR-S-dermatodea_contig9826:1832..1874Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9826 1833..1874 +
1694079930.3106627-UTR-S-dermatodea_contig9826:1832..18741694079930.3106627-UTR-S-dermatodea_contig9826:1832..1874Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9826 1833..1874 +
1622925433.5259888-UTR-S-dermatodea_contig9826:3168..35111622925433.5259888-UTR-S-dermatodea_contig9826:3168..3511Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9826 3169..3511 +
1694079930.3560016-UTR-S-dermatodea_contig9826:3168..35111694079930.3560016-UTR-S-dermatodea_contig9826:3168..3511Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9826 3169..3511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.5049996-CDS-S-dermatodea_contig9826:1874..19431622925433.5049996-CDS-S-dermatodea_contig9826:1874..1943Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9826 1875..1943 +
1694079930.32478-CDS-S-dermatodea_contig9826:1874..19431694079930.32478-CDS-S-dermatodea_contig9826:1874..1943Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9826 1875..1943 +
1622925433.5146086-CDS-S-dermatodea_contig9826:2847..31681622925433.5146086-CDS-S-dermatodea_contig9826:2847..3168Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9826 2848..3168 +
1694079930.3368182-CDS-S-dermatodea_contig9826:2847..31681694079930.3368182-CDS-S-dermatodea_contig9826:2847..3168Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9826 2848..3168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9826.17800.1

>prot_S-dermatodea_contig9826.17800.1 ID=prot_S-dermatodea_contig9826.17800.1|Name=mRNA_S-dermatodea_contig9826.17800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=130bp
MTEEICDVVDSYGLVCFYPLSIQDAETVGRVLAQVDKCNGYILGAHDTAI
AQGASAAGSVSNLFRTAFSDTHEPMFEKVGSVQERYMPETYGSVPPELLM
NGTPEARLGLRTGRGASAERRSEEPSGGD*
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mRNA from alignment at S-dermatodea_contig9826:1833..3511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9826.17800.1 ID=mRNA_S-dermatodea_contig9826.17800.1|Name=mRNA_S-dermatodea_contig9826.17800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1679bp|location=Sequence derived from alignment at S-dermatodea_contig9826:1833..3511+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGAAGGCGGCAGGCGAAGAGTGAAGGGACGCTTCCACAAGATGACGGA
AGAGATCTGCGACGTCGTGGACAGCTACGGGCTGGTTTGTTTCTACCCTC
TCAGCATACAGGCGAGTTTCTATCGCCCGCCCATGAGCCCGGTCGTACTA
CAGTAGCCCGGCCACCGCGCGCATCGATATTTTCTCTGATCCTGCGTCTG
AGGGGTATCGTATTATATGCATAAAGTTCGTTTGATGCGCGTCCGATTTT
GTCTAGGTGTGCAGTTGTTGAGTCGAAAAAGACCCGTGCCGCAGGACTCA
AGCTTTTACGGTATGAAAAGCTCATCAGACAGAGGAATTTCCGGTTCATG
CCTGATCGGATTTATCATGTGCCCGCCACGGGCGAGCCCGGAAATTGTTC
CCGCGTAACTTTTTTCGCAGACAGTCTGATATCGTCGGGAAAGACCCCCT
AAAAAATATAGATTTCAAAAACATAGAGCGGGAAAGCTTCCCCCCCCACC
CCTATTTTTTTTTAAGATTTCAGAAATATAGAGCACGCGTTGGGTCCCAC
CTTTTCCAGTTGGAAGATGGTCCAAGCTACACCTATGGAGGCTCCGTTGT
TACATATCATGCTATGGTGTCTTATCATTTATGATGTTGTACGGTTACCG
CATCATACAGGACACGAGTCTTTGTCCCCCCCTCCCCCCCCCTGCCCGCG
TCGTATGGTTTTTGTCCTGATCGGGCACGAAAACATCGCCCAACTCTTTG
GCGTTTCCCCTTACGAACCCGTCAAGAAACGCGCGCAAAAACGTTGCACA
GGTTCACGGGTTTACCATGACCGCATCGCCCTGTGACCCTCGCTTGTCCA
ATCGTCGGGCTTCTCCGATGAACCGAGCTGTTTGTTACCTCGGTTGGGTC
CCCCTCCCCGCCCCCGTCCGTGGCTGGCTGTATTAAGTTAACGCCGAGCA
CAAACTCGTTTTCCTTTTTATTTGTTCTCCGACCGATCTCTCGATGAAAA
CAAACAAATCCGCAGGATGCAGAGACCGTCGGACGCGTGCTTGCGCAGGT
GGACAAGTGTAACGGCTACATCCTCGGCGCGCACGACACCGCCATCGCAC
AGGGCGCTTCGGCGGCGGGGAGCGTGAGCAACCTCTTCCGCACCGCCTTC
AGCGACACGCACGAACCCATGTTTGAGAAGGTTGGGAGCGTGCAGGAACG
CTACATGCCCGAGACGTATGGGTCGGTACCGCCAGAGCTGCTCATGAACG
GGACGCCGGAGGCTAGGTTAGGGTTGCGCACCGGAAGGGGTGCGTCTGCC
GAGCGCCGGTCCGAGGAGCCCTCGGGGGGTGATTGATTTGCACGGCGCGT
ATTGTTTTGCTGTGCTATTATTTTGTTTGCGGGGGGAAGGGAGGTGCAGG
GTAACCTCGATGGTCAGCTTCAGCTATTGAACCGGCTATTCACAGCGTTT
GCTGCCTGCCGGCACCCGTTCCATACTTGGACTCTGTTGTGGCGAGGCGA
TGACATTTTCCCCCCGGTTTTTGCTGCCTCGGGGGTTAATCTCAGGCGGA
AACTGATTTACACGTTCAGTCTGCGGGAAGCATGCCAAAAAATATTGGTA
CGTATTTATGCACGCTTTTGTTTTCTTTTTGTTGTGTGTGTCCCCTATAG
AAAACTTTACTATTATTAACATTATCACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9826:1833..3511+

>mRNA_S-dermatodea_contig9826.17800.1 ID=mRNA_S-dermatodea_contig9826.17800.1|Name=mRNA_S-dermatodea_contig9826.17800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at S-dermatodea_contig9826:1833..3511+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGAAGAGATCTGCGACGTCGTGGACAGCTACGGGCTGGTTTGTTT
CTACCCTCTCAGCATACAGATGACGGAAGAGATCTGCGACGTCGTGGACA
GCTACGGGCTGGTTTGTTTCTACCCTCTCAGCATACAGGATGCAGAGACC
GTCGGACGCGTGCTTGCGCAGGTGGACAAGTGTAACGGCTACATCCTCGG
CGCGCACGACACCGCCATCGCACAGGGCGCTTCGGCGGCGGGGAGCGTGA
GCAACCTCTTCCGCACCGCCTTCAGCGACACGCACGAACCCATGTTTGAG
AAGGTTGGGAGCGTGCAGGAACGCTACATGCCCGAGACGTATGGGTCGGT
ACCGCCAGAGCTGCTCATGAACGGGACGCCGGAGGCTAGGTTAGGGTTGC
GCACCGGAAGGGGTGCGTCTGCCGAGCGCCGGTCCGAGGAGCCCTCGGGG
GGTGATTGAGATGCAGAGACCGTCGGACGCGTGCTTGCGCAGGTGGACAA
GTGTAACGGCTACATCCTCGGCGCGCACGACACCGCCATCGCACAGGGCG
CTTCGGCGGCGGGGAGCGTGAGCAACCTCTTCCGCACCGCCTTCAGCGAC
ACGCACGAACCCATGTTTGAGAAGGTTGGGAGCGTGCAGGAACGCTACAT
GCCCGAGACGTATGGGTCGGTACCGCCAGAGCTGCTCATGAACGGGACGC
CGGAGGCTAGGTTAGGGTTGCGCACCGGAAGGGGTGCGTCTGCCGAGCGC
CGGTCCGAGGAGCCCTCGGGGGGTGATTGA
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