mRNA_S-dermatodea_contig9824.17798.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9824.17798.1
Unique NamemRNA_S-dermatodea_contig9824.17798.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9824.17798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9824contigS-dermatodea_contig9824:6389..6953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-15_003980.2
Hectar predicted targeting categorysignal peptide
Exons1
Model size566
Cds size549
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.3713362-UTR-S-dermatodea_contig9824:6388..64041622925433.3713362-UTR-S-dermatodea_contig9824:6388..6404Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9824 6389..6404 +
1694079930.2437654-UTR-S-dermatodea_contig9824:6388..64041694079930.2437654-UTR-S-dermatodea_contig9824:6388..6404Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9824 6389..6404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.3812795-CDS-S-dermatodea_contig9824:6404..69531622925433.3812795-CDS-S-dermatodea_contig9824:6404..6953Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9824 6405..6953 +
1694079930.2558174-CDS-S-dermatodea_contig9824:6404..69531694079930.2558174-CDS-S-dermatodea_contig9824:6404..6953Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9824 6405..6953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9824.17798.1prot_S-dermatodea_contig9824.17798.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9824 6405..6953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9824.17798.1

>prot_S-dermatodea_contig9824.17798.1 ID=prot_S-dermatodea_contig9824.17798.1|Name=mRNA_S-dermatodea_contig9824.17798.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=183bp
MAPFRRWYLWRPGGRRRGLAVILLAAPIFLGKNNYCDGYMSTIHLGRTLK
ALRTLEQQQHQLQEGQDQQQPQQLDGEPHPSSKPCEASVEEKGVGDEDPS
PQNDDKNEGVSAALGVHPSWGKGPPSEGITGAPPVLPSSDADSIASRQEE
DRTIGEGNAGSIGSLDREGRERDGEGVAAAQEE
back to top

mRNA from alignment at S-dermatodea_contig9824:6389..6953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9824.17798.1 ID=mRNA_S-dermatodea_contig9824.17798.1|Name=mRNA_S-dermatodea_contig9824.17798.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at S-dermatodea_contig9824:6389..6953+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCCGCCCAACCCCATGGCTCCCTTCAGGCGGTGGTACCTATGGCGTC
CGGGTGGGAGACGTCGTGGTCTAGCGGTGATCCTCCTCGCAGCGCCGATT
TTCCTCGGTAAAAATAACTACTGCGATGGTTACATGTCCACGATACACCT
GGGTCGAACGCTCAAGGCACTTCGCACCCTCGAGCAACAGCAGCACCAAC
TGCAGGAGGGGCAGGACCAACAACAGCCGCAGCAGCTCGATGGGGAGCCG
CACCCCTCTTCGAAGCCCTGCGAGGCGAGTGTCGAAGAGAAGGGAGTCGG
CGACGAAGACCCGTCCCCGCAAAACGACGATAAAAACGAGGGCGTCTCTG
CCGCCCTTGGGGTTCATCCATCCTGGGGTAAAGGGCCGCCATCAGAGGGA
ATCACGGGTGCGCCGCCGGTGCTGCCCTCGAGCGACGCCGACTCGATAGC
TTCTCGTCAAGAGGAAGACCGTACCATCGGCGAGGGCAATGCTGGTAGTA
TAGGCTCGCTCGATAGGGAGGGGAGGGAGCGGGATGGGGAGGGCGTTGCT
GCAGCGCAGGAAGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9824:6389..6953+

>mRNA_S-dermatodea_contig9824.17798.1 ID=mRNA_S-dermatodea_contig9824.17798.1|Name=mRNA_S-dermatodea_contig9824.17798.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at S-dermatodea_contig9824:6389..6953+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTCCCTTCAGGCGGTGGTACCTATGGCGTCCGGGTGGGAGACGTCG
TGGTCTAGCGGTGATCCTCCTCGCAGCGCCGATTTTCCTCGGTAAAAATA
ACTACTGCGATGGTTACATGTCCACGATACACCTGGGTCGAACGCTCAAG
GCACTTCGCACCCTCGAGCAACAGCAGCACCAACTGCAGGAGGGGCAGGA
CCAACAACAGCCGCAGCAGCTCGATGGGGAGCCGCACCCCTCTTCGAAGC
CCTGCGAGGCGAGTGTCGAAGAGAAGGGAGTCGGCGACGAAGACCCGTCC
CCGCAAAACGACGATAAAAACGAGGGCGTCTCTGCCGCCCTTGGGGTTCA
TCCATCCTGGGGTAAAGGGCCGCCATCAGAGGGAATCACGGGTGCGCCGC
CGGTGCTGCCCTCGAGCGACGCCGACTCGATAGCTTCTCGTCAAGAGGAA
GACCGTACCATCGGCGAGGGCAATGCTGGTAGTATAGGCTCGCTCGATAG
GGAGGGGAGGGAGCGGGATGGGGAGGGCGTTGCTGCAGCGCAGGAAGAGA
TGGCTCCCTTCAGGCGGTGGTACCTATGGCGTCCGGGTGGGAGACGTCGT
GGTCTAGCGGTGATCCTCCTCGCAGCGCCGATTTTCCTCGGTAAAAATAA
CTACTGCGATGGTTACATGTCCACGATACACCTGGGTCGAACGCTCAAGG
CACTTCGCACCCTCGAGCAACAGCAGCACCAACTGCAGGAGGGGCAGGAC
CAACAACAGCCGCAGCAGCTCGATGGGGAGCCGCACCCCTCTTCGAAGCC
CTGCGAGGCGAGTGTCGAAGAGAAGGGAGTCGGCGACGAAGACCCGTCCC
CGCAAAACGACGATAAAAACGAGGGCGTCTCTGCCGCCCTTGGGGTTCAT
CCATCCTGGGGTAAAGGGCCGCCATCAGAGGGAATCACGGGTGCGCCGCC
GGTGCTGCCCTCGAGCGACGCCGACTCGATAGCTTCTCGTCAAGAGGAAG
ACCGTACCATCGGCGAGGGCAATGCTGGTAGTATAGGCTCGCTCGATAGG
GAGGGGAGGGAGCGGGATGGGGAGGGCGTTGCTGCAGCGCAGGAAGAG
back to top