mRNA_S-dermatodea_contig9823.17796.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9823.17796.1
Unique NamemRNA_S-dermatodea_contig9823.17796.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9823.17796.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.520e-30
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   29 YCPPSDFRVNVEAGLRSALSTGFAFLWLGFGPFEGGLSFFAAVASMVCTGNSAGQTMSRSLEMTHGAIIGALCAVL 256
            Y PPSDFRVNVEAGLR+ LS G  FLWLGFGPF GGLSFFA V ++VC G SAGQT+SRSL MTHGA++GA+CA+L
Sbjct:   23 YRPPSDFRVNVEAGLRTTLSLGLVFLWLGFGPFGGGLSFFAGVTAIVCVGGSAGQTISRSLMMTHGALVGAICAIL 98
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9823.17796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD61_ECTSI5.520e-3075.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9823contigS-dermatodea_contig9823:1964..2962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.3217793-CDS-S-dermatodea_contig9823:1963..21741622925433.3217793-CDS-S-dermatodea_contig9823:1963..2174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9823 1964..2174 +
1694079930.2125986-CDS-S-dermatodea_contig9823:1963..21741694079930.2125986-CDS-S-dermatodea_contig9823:1963..2174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9823 1964..2174 +
1622925433.3321795-CDS-S-dermatodea_contig9823:2913..29601622925433.3321795-CDS-S-dermatodea_contig9823:2913..2960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9823 2914..2960 +
1694079930.2276947-CDS-S-dermatodea_contig9823:2913..29601694079930.2276947-CDS-S-dermatodea_contig9823:2913..2960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9823 2914..2960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9823.17796.1prot_S-dermatodea_contig9823.17796.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9823 1964..2960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9823.17796.1

>prot_S-dermatodea_contig9823.17796.1 ID=prot_S-dermatodea_contig9823.17796.1|Name=mRNA_S-dermatodea_contig9823.17796.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
DHYYYSGERLLPTERLPRQRRGGSPLGAIHRLRVPVARFRPVRGRLVFFR
GRRFHGVHRQFRGTDDEQISGNDARGDHRSPVRGAA
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mRNA from alignment at S-dermatodea_contig9823:1964..2962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9823.17796.1 ID=mRNA_S-dermatodea_contig9823.17796.1|Name=mRNA_S-dermatodea_contig9823.17796.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=999bp|location=Sequence derived from alignment at S-dermatodea_contig9823:1964..2962+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCACTACTACTACTCCGGGGAGCGGCTACTGCCCACCGAGCGACTTCC
GCGTCAACGTCGAGGCGGGTCTCCGCTCGGCGCTATCCACCGGCTTCGCG
TTCCTGTGGCTAGGTTTCGGCCCGTTCGAGGGAGGCTTGTCTTTTTTCGC
GGCCGTCGCTTCCATGGTGTGCACAGGCAATTCCGCGGGACAGACGATGA
GCAGATCTCTGGTGAGCGCCGCTTTCCCTCGCTCGCGCGGCAGGAGGGCG
TCACCGCCACGCCTGTAGTTGGTGTGGACGTTGGGGGTTTGTATGGTATG
CAAGGATGTTTGGTTCCTAGACGATACACTGTATGGGCGTGTACGGCGTT
TTTTCGTTTGTTCTCGACCTGCTGCGTGCGTATGTGTAGCTCTGGTCTTT
GGCTGCTCGTGCACAGATTTGTATCAAGCGACAGAGGCCGCGATGTGTAT
GACTTTTGTTCGCGTGGAGCAGTCAACAAACCTATATATTGAGTTTGTTA
AAAAAGCGCCAATACGACCCGAGAGCATCTTCTTGATAATTCCTTGTTTA
AAAAAAAAACTATTGAATCTTGAGCGGAAGATTGCAGATAGAGGCTGTAA
TACCAGGAACTGACTTCTTCAGAGGTTGGTGTATCTTTGAGAAAAAAACG
CTTTCCGTAGATTCGGCTACATTAACTGTACTCCTCGGCAACTAGTGTTT
CCTCAGTTTCGATCGATATTGCTTCGACCACGCTTGCATCACCTGTGTGC
CTGTACTCCACTCCGAGCTTGCGTGTTTACACTAGTACATCGCAAGCACG
CTGTATACACAAGGGCCCCATTAAACACTGCTCGGGTGCATCTGACCACA
AGTCGGGCCGTGTTATCCCGATCGGGTGCACGTGCTATCACCAATCAACT
AATCTAACGATTAATCCGTCGCCGGCGCGCGATCGACATACCCTTCCCAG
GAAATGACGCACGGGGCGATCATCGGAGCCCTGTGCGCGGTGCTGCCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9823:1964..2962+

>mRNA_S-dermatodea_contig9823.17796.1 ID=mRNA_S-dermatodea_contig9823.17796.1|Name=mRNA_S-dermatodea_contig9823.17796.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig9823:1964..2962+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCACTACTACTACTCCGGGGAGCGGCTACTGCCCACCGAGCGACTTCC
GCGTCAACGTCGAGGCGGGTCTCCGCTCGGCGCTATCCACCGGCTTCGCG
TTCCTGTGGCTAGGTTTCGGCCCGTTCGAGGGAGGCTTGTCTTTTTTCGC
GGCCGTCGCTTCCATGGTGTGCACAGGCAATTCCGCGGGACAGACGATGA
GCAGATCTCTGGACCACTACTACTACTCCGGGGAGCGGCTACTGCCCACC
GAGCGACTTCCGCGTCAACGTCGAGGCGGGTCTCCGCTCGGCGCTATCCA
CCGGCTTCGCGTTCCTGTGGCTAGGTTTCGGCCCGTTCGAGGGAGGCTTG
TCTTTTTTCGCGGCCGTCGCTTCCATGGTGTGCACAGGCAATTCCGCGGG
ACAGACGATGAGCAGATCTCTGGAAATGACGCACGGGGCGATCATCGGAG
CCCTGTGCGCGGTGCTGCCGAAATGACGCACGGGGCGATCATCGGAGCCC
TGTGCGCGGTGCTGCC
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