mRNA_S-dermatodea_contig9820.17795.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9820.17795.1
Unique NamemRNA_S-dermatodea_contig9820.17795.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: D7FPY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY2_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 4.190e-51
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQLYSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAMADAA 267
            DPTSDNLGTTIWDASVILVRYMERNPQLYS R+LEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQA+ DAA
Sbjct:   29 DPTSDNLGTTIWDASVILVRYMERNPQLYSRRRLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAVEDAA 117          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: A0A1D2A3F6_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A3F6_AUXPR)

HSP 1 Score: 103 bits (258), Expect = 1.150e-26
Identity = 51/94 (54.26%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQL--YSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAMADAASRG 276
            DP S+NLGTT+WDAS++L +++E+N +   +S+ +++GKR LELGAG GLAG   AL GAHVTFTDL  V+PLL++NV  NL   A+   + RG
Sbjct:   29 DPNSENLGTTVWDASIVLAKFLEKNARKGEWSTVRVKGKRCLELGAGMGLAGAAMALMGAHVTFTDLESVLPLLRQNVQNNLTPSALRRGSWRG 122          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: A0A835YRK7_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.610e-25
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    4 PTSDNLGTTIWDASVILVRYMERNPQLYSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGG 246
            P S NLGT++WDASVILV Y+  N + ++ R ++GKRVLELGAGCGLAG+Y A  GA VT TDL  V+P+L +N   NLGG
Sbjct:   28 PGSGNLGTSVWDASVILVHYLNDNSKQFNQRTMDGKRVLELGAGCGLAGIYCATLGADVTLTDLEPVLPILNQNARRNLGG 108          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: A0A1D1ZWE0_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZWE0_AUXPR)

HSP 1 Score: 103 bits (257), Expect = 3.120e-25
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQL--YSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAM----ADAAS 270
            DP S+NLGTT+WDAS++L +++E+N +   +S+ +++GKR LELGAG GLAG   AL GAHVTFTDL  V+PLL++NV  NL   A+    ADAA+
Sbjct:   29 DPNSENLGTTVWDASIVLAKFLEKNARKGEWSTVRVKGKRCLELGAGMGLAGAAMALMGAHVTFTDLESVLPLLRQNVQNNLTPSALRLSGADAAA 124          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: A0A6P5EYF7_ANACO (protein N-lysine methyltransferase METTL21A-like isoform X3 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EYF7_ANACO)

HSP 1 Score: 99.0 bits (245), Expect = 2.490e-24
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQL--YSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGG--QAMADAASRG 276
            DP S +LGTT+WDAS++ V+Y+E+N +   +S  KL+GKRV+ELGAGCGLAG+  AL G  V  TD +EV+PLL RNV  N     QA +D+A  G
Sbjct:   28 DPNSKHLGTTVWDASMVFVKYLEKNCRKGRFSPSKLKGKRVIELGAGCGLAGLGMALLGCDVITTDQVEVLPLLMRNVERNTSWILQANSDSAPFG 123          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: A0A6P5EXQ5_ANACO (protein N-lysine methyltransferase METTL21A-like isoform X2 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXQ5_ANACO)

HSP 1 Score: 99.0 bits (245), Expect = 3.150e-24
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQL--YSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGG--QAMADAAS 270
            DP S +LGTT+WDAS++ V+Y+E+N +   +S  KL+GKRV+ELGAGCGLAG+  AL G  V  TD +EV+PLL RNV  N     QA +D+A+
Sbjct:   28 DPNSKHLGTTVWDASMVFVKYLEKNCRKGRFSPSKLKGKRVIELGAGCGLAGLGMALLGCDVITTDQVEVLPLLMRNVERNTSWILQANSDSAN 121          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: A0A2P6TLS3_CHLSO (Uncharacterized protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLS3_CHLSO)

HSP 1 Score: 101 bits (252), Expect = 1.460e-23
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQL--YSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAM 255
            DP S NLGTT+WDAS++L +Y+E+N +   +S  K+ GKR LELGAG GLAGM  AL GA V FTD+ +V+PLL+RNV  N+   A+
Sbjct:   27 DPNSSNLGTTVWDASIVLAKYIEKNSRRGDFSRPKVRGKRALELGAGMGLAGMALALLGAEVVFTDIGDVLPLLRRNVEQNISPAAL 113          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: A0A0A9DW77_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DW77_ARUDO)

HSP 1 Score: 95.1 bits (235), Expect = 2.030e-23
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQL--YSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMN 237
            DP S +LGTT+WDAS++ V+++E+N +   +   KL+GKRV+ELGAGCGLAG   AL G +V  TD +EV+PLL RNV  N
Sbjct:   10 DPNSKHLGTTVWDASMVFVKFLEKNSRKGRFCPSKLKGKRVIELGAGCGLAGFGMALLGCNVVTTDQVEVLPLLMRNVERN 90          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: A0A833VD43_9POAL (Protein N-lysine methyltransferase METTL21A n=2 Tax=Carex littledalei TaxID=544730 RepID=A0A833VD43_9POAL)

HSP 1 Score: 99.8 bits (247), Expect = 2.770e-23
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQL--YSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLG--GQAMADAASRG 276
            DP S +LG T+WDAS++LV+Y+E+N +   +S  K++GKRV+ELGAGCGLAG+  AL G  VT TD +EV+PLL RNV  N     Q  +D+ S G
Sbjct:   28 DPNSKHLGMTVWDASMVLVKYLEKNSRKGRFSPAKMKGKRVIELGAGCGLAGLGMALLGCDVTLTDQLEVLPLLTRNVDRNKSWISQGNSDSGSFG 123          
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Match: E1ZD88_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZD88_CHLVA)

HSP 1 Score: 100 bits (248), Expect = 3.850e-23
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 DPTSDNLGTTIWDASVILVRYMERNPQL--YSSRKLEGKRVLELGAGCGLAGMYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAM 255
            DP S NLGTT+WDAS++L +Y+E+N +   +S  K+ G++ LELGAG GLAGM  AL GA V FTD+ +V+PLLQRNV  N+   A+
Sbjct:   27 DPNSSNLGTTVWDASIVLAKYIEKNSRRGDFSRPKVRGRQALELGAGMGLAGMALALLGADVAFTDIGDVLPLLQRNVDQNISTAAL 113          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9820.17795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY2_ECTSI4.190e-5195.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1D2A3F6_AUXPR1.150e-2654.26Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A835YRK7_9STRA1.610e-2560.49Putative methyltransferase-domain-containing prote... [more]
A0A1D1ZWE0_AUXPR3.120e-2555.21Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A6P5EYF7_ANACO2.490e-2454.17protein N-lysine methyltransferase METTL21A-like i... [more]
A0A6P5EXQ5_ANACO3.150e-2454.26protein N-lysine methyltransferase METTL21A-like i... [more]
A0A2P6TLS3_CHLSO1.460e-2356.32Uncharacterized protein n=1 Tax=Chlorella sorokini... [more]
A0A0A9DW77_ARUDO2.030e-2355.56Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A833VD43_9POAL2.770e-2353.13Protein N-lysine methyltransferase METTL21A n=2 Ta... [more]
E1ZD88_CHLVA3.850e-2355.17Uncharacterized protein n=1 Tax=Chlorella variabil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9820contigS-dermatodea_contig9820:2851..4160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.4e-42
Seed eggNOG ortholog2880.D7FPY2
Preferred nameVCPKMT
KEGG koko:K21806
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0019899,GO:0032259,GO:0032780,GO:0032991,GO:0036211,GO:0043086,GO:0043170,GO:0043412,GO:0043414,GO:0043462,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051117,GO:0051336,GO:0051346,GO:0065007,GO:0065009,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-01_008220.1
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.276206-CDS-S-dermatodea_contig9820:2850..29431622925433.276206-CDS-S-dermatodea_contig9820:2850..2943Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9820 2851..2943 -
1694079930.1851752-CDS-S-dermatodea_contig9820:2850..29431694079930.1851752-CDS-S-dermatodea_contig9820:2850..2943Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9820 2851..2943 -
1622925433.2867463-CDS-S-dermatodea_contig9820:3965..41601622925433.2867463-CDS-S-dermatodea_contig9820:3965..4160Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9820 3966..4160 -
1694079930.1960661-CDS-S-dermatodea_contig9820:3965..41601694079930.1960661-CDS-S-dermatodea_contig9820:3965..4160Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9820 3966..4160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9820.17795.1prot_S-dermatodea_contig9820.17795.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9820 2851..4160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9820.17795.1

>prot_S-dermatodea_contig9820.17795.1 ID=prot_S-dermatodea_contig9820.17795.1|Name=mRNA_S-dermatodea_contig9820.17795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
DPTSDNLGTTIWDASVILVRYMERNPQLYSSRKLEGKRVLELGAGCGLAG
MYFALQGAHVTFTDLIEVVPLLQRNVTMNLGGQAMADAASRGGRLK
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mRNA from alignment at S-dermatodea_contig9820:2851..4160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9820.17795.1 ID=mRNA_S-dermatodea_contig9820.17795.1|Name=mRNA_S-dermatodea_contig9820.17795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1310bp|location=Sequence derived from alignment at S-dermatodea_contig9820:2851..4160- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCCGACCTCCGACAACCTGGGCACGACGATTTGGGACGCGAGCGTGAT CCTGGTGCGCTACATGGAGCGAAATCCCCAGCTGTACTCCAGCAGAAAAC TGGAAGGCAAGAGGGTCCTGGAGCTCGGTGCCGGCTGCGGGCTGGCGGGG ATGTACTTCGCGTTGCAGGGCGCCCACGTCACCTTCACGGACTTGGTGAG GTTTGTGACTCGAGAATGAAGGGTGGGTGCGGTGCGGTTACGCGACACGA CACACGTCCCCTGTGCAGGCTTTCCATTTGATCCCCTTCGGCCTGCGTAG ATAATTTTTGCTCTTAAGGTGGTCTGATGTCGGCACTATCATAAGTCATA AGTCCTGAGATGGGGTTGCGCTTGGACGCCAGCAGGAAGGCGGCGACCTT GACACTTGCTGCGGGGTGTGGTGTGGTACAGTAGTACATGCACGAGAGTC TGGACGCGAGCGATGATTTGCGCGCAAAAACAATTTTCGCTCTCTACACG TGTGATACATGCTACAGTACAGAGTACTCGTACGGTACATCCAAAGCAAC GAGCGCTTTTCAAAACCTAAGCAAGAACAAAGAATGAAACAGAGACCCCC GTCTCGCGATATACGGAAAAAAAGCTATCGCCTGCCGGCCTGCCCGGACG CACCCTCCTCTTGCACCGTAAACGTAACACCTCTGGTGCAGCTATGCTAC CGTACCTTTATTAATTAGTAGATAGCGCTTTGGACGTTTTTTTAATAGGG ATTTTCGAGTGACCATGCCCGCACTAAAATCCTATACGATTTTGAGGCCG ATTTTGTACACAAAAATCCTATAATATACGATTTTGGGTGATGCCACACA ACTTGATGTTTGTGTTGAGCGCCAAGTGTTGAAAATAGTAGGAGTTTTTG CACATCAGGGGCGTAGCGTAGCCCATGCCCACACTAAAATCCTATACGCT TTTGAGGCCGATTTTGTACACAAAACTCCTATAATATACGATTTTGAGTG ATGCCACACAACTTGATGTTTGTGTTGAGCGCCAAGTGTTGAAAATATTA GGATTTTTTTACCTCAGGGGCGTAGCGTAGCCTTACTGTGACTGTGGCTA CATACTACTGTACTATTAATACAAGTCATGCAATAATGATAATAACACCA ATAACACCACAACGTCGTGCCCTTTGGTCCTCACTGCTGCTGCCGCTCGT GCCCGCGCAAAAAACAGATCGAAGTCGTCCCTCTGCTTCAGCGAAACGTC ACGATGAACCTCGGCGGGCAAGCCATGGCGGACGCTGCGAGCCGGGGAGG TCGCCTCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9820:2851..4160-

>mRNA_S-dermatodea_contig9820.17795.1 ID=mRNA_S-dermatodea_contig9820.17795.1|Name=mRNA_S-dermatodea_contig9820.17795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig9820:2851..4160- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCCGACCTCCGACAACCTGGGCACGACGATTTGGGACGCGAGCGTGAT
CCTGGTGCGCTACATGGAGCGAAATCCCCAGCTGTACTCCAGCAGAAAAC
TGGAAGGCAAGAGGGTCCTGGAGCTCGGTGCCGGCTGCGGGCTGGCGGGG
ATGTACTTCGCGTTGCAGGGCGCCCACGTCACCTTCACGGACTTGGACCC
GACCTCCGACAACCTGGGCACGACGATTTGGGACGCGAGCGTGATCCTGG
TGCGCTACATGGAGCGAAATCCCCAGCTGTACTCCAGCAGAAAACTGGAA
GGCAAGAGGGTCCTGGAGCTCGGTGCCGGCTGCGGGCTGGCGGGGATGTA
CTTCGCGTTGCAGGGCGCCCACGTCACCTTCACGGACTTGATCGAAGTCG
TCCCTCTGCTTCAGCGAAACGTCACGATGAACCTCGGCGGGCAAGCCATG
GCGGACGCTGCGAGCCGGGGAGGTCGCCTCAAGATCGAAGTCGTCCCTCT
GCTTCAGCGAAACGTCACGATGAACCTCGGCGGGCAAGCCATGGCGGACG
CTGCGAGCCGGGGAGGTCGCCTCAAG
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