mRNA_S-dermatodea_contig9820.17794.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9820.17794.1
Unique NamemRNA_S-dermatodea_contig9820.17794.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: D7FPY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY2_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.420e-55
Identity = 89/103 (86.41%), Postives = 94/103 (91.26%), Query Frame = -1
Query:   28 RIKVLEYCWGKPLDGLSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRR 336
            + KVLEY WGKPLDGLSPPYDY+VACDCVY E LVESLVWS+A  SGR TTVLVASEKREEVTYAKFRARL++DF VRQAPRRHMDKAYDHE SEVLVCKLRR
Sbjct:  145 KAKVLEYDWGKPLDGLSPPYDYIVACDCVYVERLVESLVWSMARCSGRGTTVLVASEKREEVTYAKFRARLSEDFAVRQAPRRHMDKAYDHENSEVLVCKLRR 247          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: A0A835YRK7_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.470e-18
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = -1
Query:   28 TRIKVLEYCWGKPLDGLSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRR 339
             + KV EYCWG P+D L  PYDY++ACDCVY E LVE LVWSL  ++G +TTV+V              + L     VR +      ++Y  E +++L CK +R
Sbjct:  113 VKYKVQEYCWGNPVDALDAPYDYIIACDCVYVESLVEVLVWSLEQLAGASTTVVVCRHVHTSKLVDLSTSTLLTIPAVRASC---AVRSYRSEHADLLFCKRKR 213          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: A0A2V0P2U2_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P2U2_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 3.050e-14
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = -1
Query:   28 RIKVLEYCWGKPL------DG----LSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRR 336
            R+ V E  W +P       +G    +SPP+DY++A DCVY EHL+  L  +L  +S   TT+LVA+E+R E   A F    +  FT+++ P   M + Y H   ++ + K ++
Sbjct:  129 RVAVAELDWSQPSHFTGGGEGGAGVVSPPFDYILAADCVYHEHLLRHLYRALLALSDSRTTILVANERRSESVQAAFSDLFSHSFTMKRIPHSKMAEGYSHPAIQLTILKRKK 241          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: A0A5J4Y5H2_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y5H2_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 1.520e-13
Identity = 33/111 (29.73%), Postives = 62/111 (55.86%), Query Frame = -1
Query:   10 RIKVLEYCWG--KPLDGLSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRRGGGTSG 336
             + V E  W   +    ++PP+DYV+A DCVY E +VE  + ++  ++   +TV+V +E R E  +++F +   + FT+++ PR  MD  + H   ++L+ + R+     G
Sbjct:  129 HVTVQELDWSNLEHYATVNPPFDYVLAADCVYHEQIVEDFLRTVLAMTHSKSTVVVVNELRSEAVHSRFTSLFEQHFTIKRTPRSKMDAVHQHSAIDILILRRRKAADAGG 239          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: UPI000C872F63 (protein N-lysine methyltransferase METTL21A n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C872F63)

HSP 1 Score: 70.5 bits (171), Expect = 4.290e-12
Identity = 32/103 (31.07%), Postives = 58/103 (56.31%), Query Frame = -1
Query:   31 IKVLEYCWGKP--LDGLSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLR 333
            ++V+E  WG    +  + PP+DY++A D VY+EHL+E LV ++  ++G  TT+L+  E R    + +       +F V+  P+  MD  Y H   ++ + +L+
Sbjct:  124 VEVVELDWGNKDHIRSVCPPFDYIIATDVVYAEHLLEPLVETILALAGPRTTILIGYEIRSNTVHEQMTNMWKNNFEVKTIPKAKMDHKYRHPSIQLFMMELK 226          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: A0A2K3DL47_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DL47_CHLRE)

HSP 1 Score: 68.6 bits (166), Expect = 3.250e-11
Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = -1
Query:    4 IKVLEYCWGKP--LDGLSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRRGGGTSGSG 333
            ++V E  W KP  +  L PPYDY++A DC+Y E L E    ++  V+   +TV+V +E R      +F +      +++  P   MD+ Y H    + + K ++ G  +G+G
Sbjct:  143 VEVQELDWTKPEQVAPLHPPYDYILAADCIYHEGLTEDFHRTVMQVTNEKSTVVVCNELRSHSVQGRFMSLFTATHSIKTVPHAKMDEKYQHPNIFIYIMKKKKKGTKAGAG 254          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: E1ZD88_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZD88_CHLVA)

HSP 1 Score: 66.6 bits (161), Expect = 1.440e-10
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = -1
Query:   28 TRIKVLEYCWGKPL--DGLSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRR 339
             R+  L+  W  P       PPYD+++A DCVYSE  V  L+ ++  + G  T  +VA+E R +  +  F  R  + FT+R+     MD  Y H +  + + K R+
Sbjct:  128 ARVASLD--WSDPACYAAFHPPYDFILAADCVYSELAVPHLLAAVLHMGGPRTQTIVANEFRSQTVHDLFMQRFGRHFTIRKVAPNKMDANYQHPLIHIYLLKRRK 231          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: A0A2P6TLS3_CHLSO (Uncharacterized protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLS3_CHLSO)

HSP 1 Score: 66.6 bits (161), Expect = 1.550e-10
Identity = 30/104 (28.85%), Postives = 54/104 (51.92%), Query Frame = -1
Query:   28 TRIKVLEYCWGKPLDGLSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRR 339
            T +  L++          PPYD+++A DCVYSE  V  L+ ++  + G  T  ++ +E R +  + +F A+  + FT+R+     MD  Y H +  + + K R+
Sbjct:  128 TSVASLDWSDRSCYADFKPPYDFILAADCVYSELAVPHLLATVLAMGGPRTQAIITNEFRSQTVHDEFMAQFGRHFTIRKVAAGKMDANYQHPLIHIYLLKRRK 231          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: A0A383V9B5_TETOB (Uncharacterized protein (Fragment) n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V9B5_TETOB)

HSP 1 Score: 65.5 bits (158), Expect = 3.790e-10
Identity = 32/106 (30.19%), Postives = 54/106 (50.94%), Query Frame = -1
Query:   25 IKVLEYCWGKPLDGLS---PPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRRG 333
            + V E  W +P    +   PP+DYV+A DC+Y E L+  L   L  ++   +T+++A+E+R E   A F       FT ++ P    D  + H   E+ + K ++G
Sbjct:  102 VTVAELDWTQPAHYAALCPPPFDYVLAADCIYHETLLRHLYRVLLAITNERSTIIIANERRSESVQAAFTGLFGTAFTFKKIPLSKQDADFCHPAIELYILKKKKG 207          
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Match: A8IU01_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IU01_CHLRE)

HSP 1 Score: 64.7 bits (156), Expect = 4.780e-10
Identity = 31/104 (29.81%), Postives = 53/104 (50.96%), Query Frame = -1
Query:   28 IKVLEYCWGKP--LDGLSPPYDYVVACDCVYSEHLVESLVWSLAGVSGRTTTVLVASEKREEVTYAKFRARLAKDFTVRQAPRRHMDKAYDHEMSEVLVCKLRR 333
            ++V E  W KP  +  L PPYDY++A DC+Y E L E    ++  V+   +TV+V +E R      +F +      +++  P   MD+ Y H    + + K ++
Sbjct:  120 VEVQELDWTKPEQVAPLHPPYDYILAADCIYHEGLTEDFHRTVMQVTNEKSTVVVCNELRSHSVQGRFMSLFTATHSIKTVPHAKMDEKYQHPNIFIYIMKKKK 223          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9820.17794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY2_ECTSI1.420e-5586.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRK7_9STRA5.470e-1841.35Putative methyltransferase-domain-containing prote... [more]
A0A2V0P2U2_9CHLO3.050e-1434.51Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A5J4Y5H2_9CHLO1.520e-1329.73Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
UPI000C872F634.290e-1231.07protein N-lysine methyltransferase METTL21A n=1 Ta... [more]
A0A2K3DL47_CHLRE3.250e-1130.36Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
E1ZD88_CHLVA1.440e-1032.08Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A2P6TLS3_CHLSO1.550e-1028.85Uncharacterized protein n=1 Tax=Chlorella sorokini... [more]
A0A383V9B5_TETOB3.790e-1030.19Uncharacterized protein (Fragment) n=1 Tax=Tetrade... [more]
A8IU01_CHLRE4.780e-1029.81Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9820contigS-dermatodea_contig9820:706..1045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.241043-CDS-S-dermatodea_contig9820:705..10441622925433.241043-CDS-S-dermatodea_contig9820:705..1044Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9820 706..1044 +
1694079930.1758044-CDS-S-dermatodea_contig9820:705..10441694079930.1758044-CDS-S-dermatodea_contig9820:705..1044Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9820 706..1044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9820.17794.1prot_S-dermatodea_contig9820.17794.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9820 706..1044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9820.17794.1

>prot_S-dermatodea_contig9820.17794.1 ID=prot_S-dermatodea_contig9820.17794.1|Name=mRNA_S-dermatodea_contig9820.17794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
VTATASAPPPPQLAHENLGHLVVVGLVHVSPRGLADREVFGQPRPELGVR
YLFALFAGHEDRRRAAGHSREAPDQALHQVLAVDAVAGDDVVVGRGEAVQ
RLAPAVLEHLDTS
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mRNA from alignment at S-dermatodea_contig9820:706..1045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9820.17794.1 ID=mRNA_S-dermatodea_contig9820.17794.1|Name=mRNA_S-dermatodea_contig9820.17794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=340bp|location=Sequence derived from alignment at S-dermatodea_contig9820:706..1045+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTACCGCTACCGCTAGTGCCCCCCCCCCGCCGCAGCTTGCACACGAGAA CCTCGGACATCTCGTGGTCGTAGGCCTTGTCCATGTGTCTCCTCGGGGCC TGGCGGACCGTGAAGTCTTTGGCCAGCCGCGCCCGGAACTTGGCGTACGT TACCTCTTCGCGCTTTTCGCTGGCCACGAGGACCGTCGTCGTGCGGCCGG ACACTCCCGCGAGGCTCCAGACCAGGCTCTCCACCAGGTGCTCGCTGTAG ACGCAGTCGCAGGCGACGACGTAGTCGTAGGGCGGGGAGAGGCCGTCCAG CGGCTTGCCCCAGCAGTACTCGAGCACCTTGATACGAGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9820:706..1045+

>mRNA_S-dermatodea_contig9820.17794.1 ID=mRNA_S-dermatodea_contig9820.17794.1|Name=mRNA_S-dermatodea_contig9820.17794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig9820:706..1045+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTACCGCTACCGCTAGTGCCCCCCCCCCGCCGCAGCTTGCACACGAGAA
CCTCGGACATCTCGTGGTCGTAGGCCTTGTCCATGTGTCTCCTCGGGGCC
TGGCGGACCGTGAAGTCTTTGGCCAGCCGCGCCCGGAACTTGGCGTACGT
TACCTCTTCGCGCTTTTCGCTGGCCACGAGGACCGTCGTCGTGCGGCCGG
ACACTCCCGCGAGGCTCCAGACCAGGCTCTCCACCAGGTGCTCGCTGTAG
ACGCAGTCGCAGGCGACGACGTAGTCGTAGGGCGGGGAGAGGCCGTCCAG
CGGCTTGCCCCAGCAGTACTCGAGCACCTTGATACGAGTGTTACCGCTAC
CGCTAGTGCCCCCCCCCCGCCGCAGCTTGCACACGAGAACCTCGGACATC
TCGTGGTCGTAGGCCTTGTCCATGTGTCTCCTCGGGGCCTGGCGGACCGT
GAAGTCTTTGGCCAGCCGCGCCCGGAACTTGGCGTACGTTACCTCTTCGC
GCTTTTCGCTGGCCACGAGGACCGTCGTCGTGCGGCCGGACACTCCCGCG
AGGCTCCAGACCAGGCTCTCCACCAGGTGCTCGCTGTAGACGCAGTCGCA
GGCGACGACGTAGTCGTAGGGCGGGGAGAGGCCGTCCAGCGGCTTGCCCC
AGCAGTACTCGAGCACCTTGATACGAGT
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