mRNA_S-dermatodea_contig9814.17789.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9814.17789.1
Unique NamemRNA_S-dermatodea_contig9814.17789.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: D7FLF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF3_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.290e-51
Identity = 85/101 (84.16%), Postives = 95/101 (94.06%), Query Frame = 1
Query:   10 VNAALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFKNKRELEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPALVEAGD 312
            VNAALE REE+LFVLGRHEL+VATPGAKDVLTT K+F A+KGF++IVK GGPFK KREL+GKLLERTFDEL+I ++GRKVRIPLALVDEVRLPPALVEAGD
Sbjct:  259 VNAALEAREEELFVLGRHELVVATPGAKDVLTTDKQFKAYKGFEVIVKAGGPFKKKRELKGKLLERTFDELMIMKAGRKVRIPLALVDEVRLPPALVEAGD 359          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: A0A836C944_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C944_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.740e-39
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    4 RRVNAALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFKNKRELEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPALVEAGD 312
            R VN ALE+ EE L+VLGRHELI+ATPGAKD+LTT +EF AFKGFD++V TG     +RE+ GKL ERTFDEL++ Q GRKVRIPLALVDEVRLP A +E G+
Sbjct:  267 RAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGE 369          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: A0A7S1DE94_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DE94_CYCTE)

HSP 1 Score: 103 bits (256), Expect = 4.580e-26
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   22 LEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFKNKRELEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPALVEAG 309
            L+ +E  L +L RHELI+ATPGA D L T ++F+A++GFD+IV+T  PF + R L GKL+ER   +LII + GR V IPL  V  VRLPPA  E G
Sbjct:   34 LDSQEHRLRILDRHELILATPGAPDTLETQRQFDAYRGFDVIVETVDPFNSNRVLTGKLVERNSMDLIIRKKGRMVTIPLNFVSSVRLPPAKREKG 129          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: A0A8J2SMH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMH4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.120e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 SRRVNAALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFKN--KRELEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPALVE 303
            SR V AALE R++DL VL RH + V +PGA D++TT   F AFKGFD+ V+T  P +   +R +EG+L ERT  +++I   GR V+IP  LV EVRLPPA  E
Sbjct:  146 SRAVVAALEPRDDDLRVLARHGVEVTSPGASDLITTQAAFEAFKGFDVTVRTLNPIEGGEERTIEGRLQERTTTDVVINVKGRMVKIPWHLVGEVRLPPAKSE 248          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: A0A7S2PI76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PI76_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.650e-21
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 VNAALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFKNKRELEGKLLERTFDELIITQSGRKVRIP 258
            + A  E  + DL VL RHE+IV +PG  +VL T ++F+AFKGFD+IV+T  P  + R LEGKLLERT  +  ITQ G+KV IP
Sbjct:  141 IEALQEAEDRDLDVLSRHEIIVTSPGVSNVLETQRQFDAFKGFDVIVQTIDPLGSNRRLEGKLLERTALDTFITQKGKKVTIP 223          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: A0A7S2SV25_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV25_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.580e-19
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   19 ALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFK-NKRE-LEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPA 294
            ALE  +E+L +L RHEL V++ GAK++L + +EF AFKGFD++VKT  P   +KRE L GKL+ R   E  I   GR VRIP  LV+EVRLP A
Sbjct:   66 ALEAHDEELQILTRHELEVSSKGAKNILDSEREFEAFKGFDVVVKTLAPDGIDKREPLYGKLVGRDVHETTINIRGRPVRIPNHLVEEVRLPEA 159          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: A0A7S2SW06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW06_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.370e-18
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   19 ALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFK-NKRE-LEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPA 294
            ALE  +E+L +L RHEL V++ GAK++L + +EF AFKGFD++VKT  P   +KRE L GKL+ R   E  I   GR VRIP  LV+EVRLP A
Sbjct:  196 ALEAHDEELQILTRHELEVSSKGAKNILDSEREFEAFKGFDVVVKTLAPDGIDKREPLYGKLVGRDVHETTINIRGRPVRIPNHLVEEVRLPEA 289          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: RIMP_GLOVI (Ribosome maturation factor RimP n=2 Tax=Gloeobacter TaxID=33071 RepID=RIMP_GLOVI)

HSP 1 Score: 79.3 bits (194), Expect = 1.730e-16
Identity = 41/99 (41.41%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 SRRVNAALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFKNKRELEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPAL 297
            SR + A L+ R++   ++G + L V++PG + VLTT +EF AF+GF ++VKT GP   K++ EG+LLER  + + +T +GR+V +P   V  V+L  +L
Sbjct:   59 SRALEALLDTRDD--LIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFGPVDGKKQWEGRLLERDGENVYLTIAGRRVALPRPQVARVQLVQSL 155          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: A0A7S1N197_9EUGL (Selenoprotein O n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N197_9EUGL)

HSP 1 Score: 80.9 bits (198), Expect = 1.490e-15
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   49 VLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFKNKRELEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPALVEAGD 312
            +L  +ELI+A+PGA +V+ T +EF A+KGF + V T  P K K + EG L  R    +I+   GR +++P ALV EV LPP   E GD
Sbjct:  203 LLANYELILASPGASNVIRTDREFEAWKGFPVTVTTTEPHKKKTKFEGNLTGRDQKHVILNLKGRPIKVPRALVAEVTLPPPKHEKGD 290          
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Match: A0A4D9D4Q5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4Q5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.600e-15
Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1
Query:    1 SRRVNAALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIVKTGGPFKNKRELE---GKLLERTFDELIITQSGRKVRIPLALVDEVRLPPALVEAGD 312
            +R V  AL   +  L VL R  L V TPGAKDVLTT +EF AF+G+++ V    P           G+LLER     I+   G+ V IP  +V EVRLP A+ EA D
Sbjct:  198 TRAVEEALLPHDNHLRVLQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADD 304          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9814.17789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF3_ECTSI2.290e-5184.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C944_9STRA1.740e-3968.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1DE94_CYCTE4.580e-2654.17Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A8J2SMH4_9STRA1.120e-2352.43Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2PI76_9STRA9.650e-2154.22Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2SV25_9STRA2.580e-1954.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SW06_9STRA2.370e-1854.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
RIMP_GLOVI1.730e-1641.41Ribosome maturation factor RimP n=2 Tax=Gloeobacte... [more]
A0A7S1N197_9EUGL1.490e-1545.45Selenoprotein O n=2 Tax=Eutreptiella gymnastica Ta... [more]
A0A4D9D4Q5_9STRA3.600e-1543.93Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9814contigS-dermatodea_contig9814:5910..6730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.6e-41
Seed eggNOG ortholog2880.D7FLF3
EggNOG OGs2E9GY@1,2SFUT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosome maturation factor RimP, C-terminal
Ec32 orthologEc-12_007950.1
Exons2
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925432.7386458-CDS-S-dermatodea_contig9814:5909..60641622925432.7386458-CDS-S-dermatodea_contig9814:5909..6064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9814 5910..6064 +
1694079929.841493-CDS-S-dermatodea_contig9814:5909..60641694079929.841493-CDS-S-dermatodea_contig9814:5909..6064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9814 5910..6064 +
1622925432.7572103-CDS-S-dermatodea_contig9814:6561..67301622925432.7572103-CDS-S-dermatodea_contig9814:6561..6730Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9814 6562..6730 +
1694079929.8528526-CDS-S-dermatodea_contig9814:6561..67301694079929.8528526-CDS-S-dermatodea_contig9814:6561..6730Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9814 6562..6730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9814.17789.1prot_S-dermatodea_contig9814.17789.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9814 5910..6730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9814.17789.1

>prot_S-dermatodea_contig9814.17789.1 ID=prot_S-dermatodea_contig9814.17789.1|Name=mRNA_S-dermatodea_contig9814.17789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
SRRVNAALEEREEDLFVLGRHELIVATPGAKDVLTTAKEFNAFKGFDIIV
KTGGPFKNKRELEGKLLERTFDELIITQSGRKVRIPLALVDEVRLPPALV
EAGDLGA*
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mRNA from alignment at S-dermatodea_contig9814:5910..6730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9814.17789.1 ID=mRNA_S-dermatodea_contig9814.17789.1|Name=mRNA_S-dermatodea_contig9814.17789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=821bp|location=Sequence derived from alignment at S-dermatodea_contig9814:5910..6730+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCAGGCGGGTCAACGCTGCGTTAGAAGAGAGGGAAGAGGACCTCTTCGT GTTGGGGCGGCACGAGCTCATCGTGGCAACGCCTGGGGCCAAAGACGTCC TAACGACCGCCAAGGAATTCAACGCATTCAAGGGGTTCGACATCATCGTG AAAACGTAAGTGTATGGAAGTAATCGGGATACTCCTCGCAAGCCATCGTT AGAAATCTTGCGAGGGACCTTGTGTGTGTCACTTGATGGTTTGCCTGTAG ATACACATTTTGAAACGAAGAACTCCAGCCAGAACTGTGCGGCCGAGGCA AGGAACGTTTGCAAGCGAACATTGTAGCGGCAGTGCAGTGTGAGCATTCG TTTAAATCGGAAGTACGCAATGCCTGGCAAAATCGAGGGACTGTGTTACC CTGTAGCCTTTGGCTAGTGAAACTGCAGACGAACGTGCGCTGCGCCGTCT TCAACGATATTTTGTCAGGGATTGAGTGCGCGCTGTAGGATTCCCAGGGG TCGAATTTCTTCACATTCCGCTTTTTCAAACTGAAAACATGAAGCCTATT AGCACAGATCAGCTCTGTGTGAGTTGGCTTAAACGTTATACACGTGATCC TAAAGTCGTGGCGCGCCACACTGGCTGGGCGGTGCCCGTGCTGTTATTTC AGGGGAGGACCATTCAAGAACAAGCGCGAGCTGGAGGGAAAGCTGCTTGA GCGCACATTCGACGAGCTAATCATAACCCAATCAGGACGAAAAGTACGCA TTCCCTTGGCTCTTGTCGACGAGGTTCGCCTCCCGCCAGCGCTAGTGGAA GCTGGAGACTTGGGCGCTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9814:5910..6730+

>mRNA_S-dermatodea_contig9814.17789.1 ID=mRNA_S-dermatodea_contig9814.17789.1|Name=mRNA_S-dermatodea_contig9814.17789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig9814:5910..6730+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCAGGCGGGTCAACGCTGCGTTAGAAGAGAGGGAAGAGGACCTCTTCGT
GTTGGGGCGGCACGAGCTCATCGTGGCAACGCCTGGGGCCAAAGACGTCC
TAACGACCGCCAAGGAATTCAACGCATTCAAGGGGTTCGACATCATCGTG
AAAACAGCAGGCGGGTCAACGCTGCGTTAGAAGAGAGGGAAGAGGACCTC
TTCGTGTTGGGGCGGCACGAGCTCATCGTGGCAACGCCTGGGGCCAAAGA
CGTCCTAACGACCGCCAAGGAATTCAACGCATTCAAGGGGTTCGACATCA
TCGTGAAAACGGGAGGACCATTCAAGAACAAGCGCGAGCTGGAGGGAAAG
CTGCTTGAGCGCACATTCGACGAGCTAATCATAACCCAATCAGGACGAAA
AGTACGCATTCCCTTGGCTCTTGTCGACGAGGTTCGCCTCCCGCCAGCGC
TAGTGGAAGCTGGAGACTTGGGCGCTTGAGGGAGGACCATTCAAGAACAA
GCGCGAGCTGGAGGGAAAGCTGCTTGAGCGCACATTCGACGAGCTAATCA
TAACCCAATCAGGACGAAAAGTACGCATTCCCTTGGCTCTTGTCGACGAG
GTTCGCCTCCCGCCAGCGCTAGTGGAAGCTGGAGACTTGGGCGCTTGA
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