mRNA_S-dermatodea_contig981.17785.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig981.17785.1
Unique NamemRNA_S-dermatodea_contig981.17785.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig981.17785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig981contigS-dermatodea_contig981:9823..10467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size646
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925432.3926675-UTR-S-dermatodea_contig981:9822..100711622925432.3926675-UTR-S-dermatodea_contig981:9822..10071Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig981 9823..10071 +
1694079929.6006737-UTR-S-dermatodea_contig981:9822..100711694079929.6006737-UTR-S-dermatodea_contig981:9822..10071Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig981 9823..10071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925432.4047506-CDS-S-dermatodea_contig981:10071..104671622925432.4047506-CDS-S-dermatodea_contig981:10071..10467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig981 10072..10467 +
1694079929.6107647-CDS-S-dermatodea_contig981:10071..104671694079929.6107647-CDS-S-dermatodea_contig981:10071..10467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig981 10072..10467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig981.17785.1prot_S-dermatodea_contig981.17785.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig981 10072..10467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig981.17785.1

>prot_S-dermatodea_contig981.17785.1 ID=prot_S-dermatodea_contig981.17785.1|Name=mRNA_S-dermatodea_contig981.17785.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=132bp
MLLRSTQQAVKPAAARVRTTEHHWCAPKNTQKQKLHCRQVPRTGIIKLTD
TLNNPSKTRCQNTSITAPTHVLRSRQSTANRAYSEEFLALRNPKEHRDCC
RQKTKKRKNAPDGIGITLIVLARTSAVPSPLH
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mRNA from alignment at S-dermatodea_contig981:9823..10467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig981.17785.1 ID=mRNA_S-dermatodea_contig981.17785.1|Name=mRNA_S-dermatodea_contig981.17785.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at S-dermatodea_contig981:9823..10467+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAATGGAACTTCAGATTGATTGATTATTCCCGCGATCCCGCTCCTGGTC
GCAAAATACGTATTTGTACAGAGGGTGCACACAGAATATCCCGCAAAAAA
CGGGCATCCACGCACAAGACGACATAAAAACCAACCAAAAGCCAGCTTCA
AACGAAGAATCCCAATACCTAAGACGATACCTGGCTGCAGCTTACAGAAA
ACGTATTGATCAACAATCCGACATCTACAGCATGTAGTCATGGTCTGAAA
TGTTGCTTAGATCTACACAGCAAGCAGTGAAACCTGCTGCTGCCCGGGTC
CGAACCACAGAACACCACTGGTGCGCACCGAAGAATACCCAGAAACAAAA
ACTGCATTGCCGTCAAGTCCCACGCACTGGCATAATCAAGCTAACGGACA
CATTGAACAACCCTTCTAAGACGAGATGCCAAAACACCTCTATCACTGCA
CCTACCCACGTATTACGCTCTCGGCAGTCAACGGCGAACCGGGCGTACAG
CGAGGAATTCCTTGCTCTTCGAAACCCAAAAGAACACAGAGACTGCTGCA
GGCAAAAAACGAAAAAACGAAAAAATGCCCCTGATGGCATTGGGATCACG
TTGATTGTACTCGCTCGTACGTCAGCCGTCCCCTCGCCCCTTCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig981:9823..10467+

>mRNA_S-dermatodea_contig981.17785.1 ID=mRNA_S-dermatodea_contig981.17785.1|Name=mRNA_S-dermatodea_contig981.17785.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at S-dermatodea_contig981:9823..10467+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTGCTTAGATCTACACAGCAAGCAGTGAAACCTGCTGCTGCCCGGGT
CCGAACCACAGAACACCACTGGTGCGCACCGAAGAATACCCAGAAACAAA
AACTGCATTGCCGTCAAGTCCCACGCACTGGCATAATCAAGCTAACGGAC
ACATTGAACAACCCTTCTAAGACGAGATGCCAAAACACCTCTATCACTGC
ACCTACCCACGTATTACGCTCTCGGCAGTCAACGGCGAACCGGGCGTACA
GCGAGGAATTCCTTGCTCTTCGAAACCCAAAAGAACACAGAGACTGCTGC
AGGCAAAAAACGAAAAAACGAAAAAATGCCCCTGATGGCATTGGGATCAC
GTTGATTGTACTCGCTCGTACGTCAGCCGTCCCCTCGCCCCTTCACATGT
TGCTTAGATCTACACAGCAAGCAGTGAAACCTGCTGCTGCCCGGGTCCGA
ACCACAGAACACCACTGGTGCGCACCGAAGAATACCCAGAAACAAAAACT
GCATTGCCGTCAAGTCCCACGCACTGGCATAATCAAGCTAACGGACACAT
TGAACAACCCTTCTAAGACGAGATGCCAAAACACCTCTATCACTGCACCT
ACCCACGTATTACGCTCTCGGCAGTCAACGGCGAACCGGGCGTACAGCGA
GGAATTCCTTGCTCTTCGAAACCCAAAAGAACACAGAGACTGCTGCAGGC
AAAAAACGAAAAAACGAAAAAATGCCCCTGATGGCATTGGGATCACGTTG
ATTGTACTCGCTCGTACGTCAGCCGTCCCCTCGCCCCTTCAC
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