mRNA_S-dermatodea_contig98043.17782.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig98043.17782.1
Unique NamemRNA_S-dermatodea_contig98043.17782.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: A0A6H5JT64_9PHAE (DUF676 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT64_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.880e-26
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 GSQGRLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            G QGRLSF+GHSAGAVIIR ALT   L+P  GR H+FVSLGSPHLGTVYGASGIVRTGMWAMKR
Sbjct: 1416 GGQGRLSFIGHSAGAVIIRVALTSPSLQPALGRLHMFVSLGSPHLGTVYGASGIVRTGMWAMKR 1479
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: D8LMF3_ECTSI (DUF676 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF3_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.000e-25
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 GSQGRLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            G QGRLSF+GHSAGAVIIR AL+   L+P  GR H+FVSLGSPHLGTVYGASGIVRTGMWAMKR
Sbjct: 1384 GGQGRLSFIGHSAGAVIIRVALSSPSLQPALGRLHMFVSLGSPHLGTVYGASGIVRTGMWAMKR 1447
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: A0A183L5R8_9TREM (DUF676 domain-containing protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183L5R8_9TREM)

HSP 1 Score: 72.8 bits (177), Expect = 9.230e-15
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   13 RLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            R+SF+GHS G +IIRAAL    + P   + H F+SL  PHLGTVY +SG++  G+W M++
Sbjct:   37 RISFIGHSMGCIIIRAALLNSRMEPYLSKLHTFLSLSGPHLGTVYNSSGLINMGIWVMQK 96
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: UPI0018D19078 (uncharacterized protein LOC105383633 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D19078)

HSP 1 Score: 75.5 bits (184), Expect = 3.160e-14
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   10 GRLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            GR+SF+GHS G +IIR+AL +  ++P   + H F+SL  PHLGT+Y +SG+V  GMW M++
Sbjct: 1700 GRISFVGHSLGTIIIRSALARPQMKPFLNKLHTFLSLSGPHLGTLYNSSGLVNAGMWFMQK 1760
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: A0A6V1VCI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VCI1_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 4.180e-14
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 QGRLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMK 189
            +GRLSF+G+S G+++IRAAL    L     R H F+SL SPHLG  Y ASG+++TGMWA++
Sbjct:   77 RGRLSFVGYSMGSLVIRAALASRALSLFLPRLHAFLSLSSPHLGCPYSASGLIKTGMWALR 137
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: A0A6J1TSL1_FRAOC (uncharacterized protein LOC113218365 isoform X1 n=4 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1TSL1_FRAOC)

HSP 1 Score: 75.1 bits (183), Expect = 4.310e-14
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   13 RLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            R+SF+GHS G VIIRAAL +  ++P+ GR H F+SL  PHLGT+Y +SG+V  G+W + R
Sbjct: 1483 RISFVGHSLGNVIIRAALAKPRMKPLLGRLHTFLSLVGPHLGTLYNSSGLVNMGVWLLSR 1542
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: A0A6P8ZP68_THRPL (protein FAM135A n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZP68_THRPL)

HSP 1 Score: 75.1 bits (183), Expect = 4.310e-14
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   13 RLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            R+SF+GHS G VIIRAAL +  ++P+ GR H F+SL  PHLGT+Y +SG+V  G+W + R
Sbjct: 1505 RISFVGHSLGNVIIRAALAKPRMKPLLGRLHTFLSLVGPHLGTLYNSSGLVNMGVWLLSR 1564
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: A0A183NUX7_9TREM (DUF676 domain-containing protein n=1 Tax=Schistosoma mattheei TaxID=31246 RepID=A0A183NUX7_9TREM)

HSP 1 Score: 72.8 bits (177), Expect = 6.990e-14
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   13 RLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            R+SF+GHS G +IIRAAL    + P   + H F+SL  PHLGTVY +SG++  G+W M++
Sbjct:   37 RISFIGHSMGCIIIRAALLNSRMEPYLSKLHTFLSLSGPHLGTVYNSSGLINMGIWVMQK 96
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BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: UPI0008F9D10F (uncharacterized protein LOC109031748 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9D10F)

HSP 1 Score: 73.9 bits (180), Expect = 1.100e-13
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   13 RLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            ++SF+GHS G +IIRAA+ +  ++P   RFH F+SL  PHLGT+Y  SG+V  GMW M++
Sbjct: 2254 KISFIGHSLGNIIIRAAIARPEMKPFLNRFHTFLSLSGPHLGTLYNNSGLVNMGMWFMQK 2313
[Close]
BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Match: A0A504YR93_FASGI (DUF676 domain-containing protein n=1 Tax=Fasciola gigantica TaxID=46835 RepID=A0A504YR93_FASGI)

HSP 1 Score: 73.6 bits (179), Expect = 1.490e-13
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   13 RLSFMGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTGMWAMKR 192
            R+SF+ HS G V++RAAL   +L P   R H F+SL  PHLGTVY +SG+V  GMW M++
Sbjct: 1026 RISFIAHSMGCVLVRAALCNPLLAPYLPRLHTFLSLSGPHLGTVYNSSGLVNMGMWVMQK 1085
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig98043.17782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT64_9PHAE2.880e-2682.81DUF676 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LMF3_ECTSI1.000e-2581.25DUF676 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A183L5R8_9TREM9.230e-1550.00DUF676 domain-containing protein n=1 Tax=Schistoso... [more]
UPI0018D190783.160e-1450.82uncharacterized protein LOC105383633 n=1 Tax=Plute... [more]
A0A6V1VCI1_HETAK4.180e-1454.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6J1TSL1_FRAOC4.310e-1455.00uncharacterized protein LOC113218365 isoform X1 n=... [more]
A0A6P8ZP68_THRPL4.310e-1455.00protein FAM135A n=1 Tax=Thrips palmi TaxID=161013 ... [more]
A0A183NUX7_9TREM6.990e-1450.00DUF676 domain-containing protein n=1 Tax=Schistoso... [more]
UPI0008F9D10F1.100e-1351.67uncharacterized protein LOC109031748 n=1 Tax=Bemis... [more]
A0A504YR93_FASGI1.490e-1353.33DUF676 domain-containing protein n=1 Tax=Fasciola ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig98043contigS-dermatodea_contig98043:124..345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.7e-18
Seed eggNOG ortholog2880.D8LMF3
EggNOG free text desc.carboxylic ester hydrolase activity
EggNOG OGsKOG2205@1,KOG2205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925432.1122348-CDS-S-dermatodea_contig98043:123..3211622925432.1122348-CDS-S-dermatodea_contig98043:123..321Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98043 124..321 -
1694079929.4369147-CDS-S-dermatodea_contig98043:123..3211694079929.4369147-CDS-S-dermatodea_contig98043:123..321Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98043 124..321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925432.122198-UTR-S-dermatodea_contig98043:321..3451622925432.122198-UTR-S-dermatodea_contig98043:321..345Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig98043 322..345 -
1694079929.447022-UTR-S-dermatodea_contig98043:321..3451694079929.447022-UTR-S-dermatodea_contig98043:321..345Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig98043 322..345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig98043.17782.1prot_S-dermatodea_contig98043.17782.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig98043 124..321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig98043.17782.1

>prot_S-dermatodea_contig98043.17782.1 ID=prot_S-dermatodea_contig98043.17782.1|Name=mRNA_S-dermatodea_contig98043.17782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
MGHSAGAVIIRAALTQEVLRPVFGRFHLFVSLGSPHLGTVYGASGIVRTG
MWAMKRCGARVGESG*
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mRNA from alignment at S-dermatodea_contig98043:124..345-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig98043.17782.1 ID=mRNA_S-dermatodea_contig98043.17782.1|Name=mRNA_S-dermatodea_contig98043.17782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig98043:124..345- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTAGCCAGGGTCGTCTGTCGTTCATGGGCCACAGCGCCGGTGCGGTTAT
AATTCGTGCGGCGCTGACGCAGGAGGTTCTGCGCCCTGTGTTTGGCCGAT
TCCATCTGTTTGTATCGCTGGGGTCGCCGCATCTTGGCACGGTGTACGGC
GCGAGCGGGATCGTGAGGACGGGGATGTGGGCCATGAAGAGGTGCGGTGC
GCGTGTAGGCGAGAGTGGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig98043:124..345-

>mRNA_S-dermatodea_contig98043.17782.1 ID=mRNA_S-dermatodea_contig98043.17782.1|Name=mRNA_S-dermatodea_contig98043.17782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig98043:124..345- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCCACAGCGCCGGTGCGGTTATAATTCGTGCGGCGCTGACGCAGGA
GGTTCTGCGCCCTGTGTTTGGCCGATTCCATCTGTTTGTATCGCTGGGGT
CGCCGCATCTTGGCACGGTGTACGGCGCGAGCGGGATCGTGAGGACGGGG
ATGTGGGCCATGAAGAGGTGCGGTGCGCGTGTAGGCGAGAGTGGGTAGAT
GGGCCACAGCGCCGGTGCGGTTATAATTCGTGCGGCGCTGACGCAGGAGG
TTCTGCGCCCTGTGTTTGGCCGATTCCATCTGTTTGTATCGCTGGGGTCG
CCGCATCTTGGCACGGTGTACGGCGCGAGCGGGATCGTGAGGACGGGGAT
GTGGGCCATGAAGAGGTGCGGTGCGCGTGTAGGCGAGAGTGGGTAG
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