mRNA_S-dermatodea_contig98025.17779.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig98025.17779.1
Unique NamemRNA_S-dermatodea_contig98025.17779.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: A0A7S6UA32_9STRA (ATP synthase subunit a n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA32_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.770e-30
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH
Sbjct:  185 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 245
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: D2Z223_9STRA (ATP synthase subunit a n=1 Tax=Chattonella marina TaxID=90936 RepID=D2Z223_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-22
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GF+WAMMGGG FLFL HF+PLI+LVLL+GLE+GVAIIQ YVFTIL+ IYLND I LH
Sbjct:  191 KVIAGFSWAMMGGGGFLFLGHFIPLIVLVLLVGLELGVAIIQGYVFTILTCIYLNDGINLH 251
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: D2Z268_HETAK (ATP synthase subunit a n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z268_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 2.760e-20
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GFAW+MM  G  LFLAHF PL++L+LL+GLE+GVA IQAYVFTILS +YLNDAI LH
Sbjct:  192 KVIAGFAWSMMTAGGLLFLAHFFPLVVLILLIGLELGVAFIQAYVFTILSCMYLNDAINLH 252
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: D8WJ88_GLOUL (ATP synthase subunit a n=2 Tax=Globisporangium ultimum TaxID=2052682 RepID=D8WJ88_GLOUL)

HSP 1 Score: 88.6 bits (218), Expect = 4.480e-20
Identity = 43/61 (70.49%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GFAWAM+   +F+F+AHF+PLI+LVLL+GLE+GVAIIQAYVFTIL+ +Y+NDA+ LH
Sbjct:  181 KVIAGFAWAMLNVNSFIFMAHFIPLILLVLLVGLELGVAIIQAYVFTILTCMYINDALNLH 241
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: A0A140F2M9_9STRA (ATP synthase subunit a n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A140F2M9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.490e-20
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GFAW+MM  G FLF AH LPLIIL LL+GLE+GVAIIQAYVFT+L+ IYLND+I LH
Sbjct:  198 KVIAGFAWSMMKAGGFLFFAHVLPLIILFLLVGLELGVAIIQAYVFTVLTCIYLNDSINLH 258
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: A0A8F0FD27_9PHAE (ATP synthase subunit a n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD27_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.020e-19
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GFAWAMMG G  L +AH LPL++LV+L GLE+GVA IQAYVFTILS IY+NDA+ LH
Sbjct:  189 KVIAGFAWAMMGSGGLLLIAHMLPLVVLVILFGLELGVAFIQAYVFTILSCIYINDALVLH 249
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: A0A140F2W0_9STRA (ATP synthase subunit a n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140F2W0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.190e-19
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GFAW+MM GG FLF+AH LPL++L +L+GLE+GVA+IQAYVFT+L+ IYLND+I LH
Sbjct:  198 KVIAGFAWSMMKGGGFLFVAHVLPLLVLFILVGLELGVAMIQAYVFTVLTCIYLNDSINLH 258
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: A0A649UDS2_AURAN (ATP synthase subunit a n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A649UDS2_AURAN)

HSP 1 Score: 87.4 bits (215), Expect = 1.540e-19
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GFAWAMM  G  +F+AHF+PL ILVL+MGLE+GVA+IQAYVFTIL+ IYLNDA+ LH
Sbjct:  193 KVIAGFAWAMMLSGGIMFIAHFVPLAILVLVMGLEVGVAMIQAYVFTILTCIYLNDALNLH 253
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BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: A0A662YD09_9STRA (F-ATPase protein 6 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YD09_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.590e-19
Identity = 41/61 (67.21%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GFAW+M+   +F+F+AHF+PLI+LVLL+GLE+GVA+IQAYVFTIL+ +Y+NDA+ LH
Sbjct:  125 KVIAGFAWSMLNVNSFIFIAHFIPLILLVLLVGLEIGVAMIQAYVFTILTCMYINDALNLH 185
[Close]
BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Match: A0A418CNJ1_9STRA (F-ATPase protein 6 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CNJ1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.790e-19
Identity = 40/61 (65.57%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 KVIGGFAWAMMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIKLH 183
            KVI GFAW+M+   T +F+AHF+PLI+LV+L+GLE+GVA+IQAYVFTIL+ +Y+NDA+ LH
Sbjct:   86 KVIAGFAWSMLNVNTLIFIAHFIPLILLVILVGLELGVAMIQAYVFTILTCMYINDALNLH 146
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig98025.17779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA32_9STRA1.770e-30100.00ATP synthase subunit a n=1 Tax=Schizocladia ischie... [more]
D2Z223_9STRA1.160e-2278.69ATP synthase subunit a n=1 Tax=Chattonella marina ... [more]
D2Z268_HETAK2.760e-2073.77ATP synthase subunit a n=2 Tax=Heterosigma akashiw... [more]
D8WJ88_GLOUL4.480e-2070.49ATP synthase subunit a n=2 Tax=Globisporangium ult... [more]
A0A140F2M9_9STRA8.490e-2075.41ATP synthase subunit a n=1 Tax=Trachydiscus minutu... [more]
A0A8F0FD27_9PHAE1.020e-1972.13ATP synthase subunit a n=1 Tax=Analipus japonicus ... [more]
A0A140F2W0_9STRA1.190e-1970.49ATP synthase subunit a n=1 Tax=Monodopsis sp. MarT... [more]
A0A649UDS2_AURAN1.540e-1973.77ATP synthase subunit a n=2 Tax=Pelagomonadales Tax... [more]
A0A662YD09_9STRA1.590e-1967.21F-ATPase protein 6 n=1 Tax=Nothophytophthora sp. C... [more]
A0A418CNJ1_9STRA1.790e-1965.57F-ATPase protein 6 n=1 Tax=Aphanomyces astaci TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig98025contigS-dermatodea_contig98025:1..186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size186
Cds size159
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.9468615-UTR-S-dermatodea_contig98025:0..271622925431.9468615-UTR-S-dermatodea_contig98025:0..27Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig98025 1..27 +
1694079929.3734055-UTR-S-dermatodea_contig98025:0..271694079929.3734055-UTR-S-dermatodea_contig98025:0..27Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig98025 1..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.9637618-CDS-S-dermatodea_contig98025:27..1861622925431.9637618-CDS-S-dermatodea_contig98025:27..186Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98025 28..186 +
1694079929.3817806-CDS-S-dermatodea_contig98025:27..1861694079929.3817806-CDS-S-dermatodea_contig98025:27..186Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98025 28..186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig98025.17779.1prot_S-dermatodea_contig98025.17779.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig98025 28..186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig98025.17779.1

>prot_S-dermatodea_contig98025.17779.1 ID=prot_S-dermatodea_contig98025.17779.1|Name=mRNA_S-dermatodea_contig98025.17779.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
MMGGGTFLFLAHFLPLIILVLLMGLEMGVAIIQAYVFTILSTIYLNDAIK
LH*
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mRNA from alignment at S-dermatodea_contig98025:1..186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig98025.17779.1 ID=mRNA_S-dermatodea_contig98025.17779.1|Name=mRNA_S-dermatodea_contig98025.17779.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at S-dermatodea_contig98025:1..186+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAGTTATTGGTGGTTTTGCTTGGGCCATGATGGGAGGTGGTACTTTCCT
TTTCTTAGCCCATTTTCTACCTCTTATTATTTTGGTTCTCTTAATGGGTT
TGGAAATGGGTGTAGCTATTATCCAGGCTTATGTCTTTACCATTTTGAGT
ACCATTTATTTAAATGATGCTATCAAACTTCATTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig98025:1..186+

>mRNA_S-dermatodea_contig98025.17779.1 ID=mRNA_S-dermatodea_contig98025.17779.1|Name=mRNA_S-dermatodea_contig98025.17779.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig98025:1..186+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGGAGGTGGTACTTTCCTTTTCTTAGCCCATTTTCTACCTCTTAT
TATTTTGGTTCTCTTAATGGGTTTGGAAATGGGTGTAGCTATTATCCAGG
CTTATGTCTTTACCATTTTGAGTACCATTTATTTAAATGATGCTATCAAA
CTTCATTGAATGATGGGAGGTGGTACTTTCCTTTTCTTAGCCCATTTTCT
ACCTCTTATTATTTTGGTTCTCTTAATGGGTTTGGAAATGGGTGTAGCTA
TTATCCAGGCTTATGTCTTTACCATTTTGAGTACCATTTATTTAAATGAT
GCTATCAAACTTCATTGA
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