mRNA_S-dermatodea_contig9792.17770.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9792.17770.1
Unique NamemRNA_S-dermatodea_contig9792.17770.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: D7FNB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB7_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.440e-33
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQKK 177
            +YKKGGKGSLVKCYKERIVEDFT+GKLECP CGQ FARDTMVHG+PAFKMIGGKVYQKK
Sbjct:  162 KYKKGGKGSLVKCYKERIVEDFTDGKLECPNCGQLFARDTMVHGRPAFKMIGGKVYQKK 220          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: A0A1E8F9C3_9ALTE (Uncharacterized protein n=10 Tax=Alteromonadales TaxID=135622 RepID=A0A1E8F9C3_9ALTE)

HSP 1 Score: 99.4 bits (246), Expect = 4.990e-26
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQK 174
            +Y+KGGKG+LVKC+KERIVED+T    +CPGCGQEFARDT++ G PA+KMIGGKV+ K
Sbjct:   26 KYRKGGKGALVKCFKERIVEDYTSIPCQCPGCGQEFARDTLIRGVPAYKMIGGKVHMK 83          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: A0A0G4GPL3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GPL3_VITBC)

HSP 1 Score: 99.4 bits (246), Expect = 3.790e-25
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQKK 177
            RYKKGGKG+LVKCY+ERIVEDFT G L C  CG EFAR T++HG+PA KMIGGKV  KK
Sbjct:   98 RYKKGGKGTLVKCYEERIVEDFTNGDLTCHSCGSEFARRTLIHGRPAHKMIGGKVTLKK 156          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: A0A072L8R7_VIBPH (Uncharacterized protein n=48 Tax=Vibrio parahaemolyticus TaxID=670 RepID=A0A072L8R7_VIBPH)

HSP 1 Score: 97.1 bits (240), Expect = 4.110e-25
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQK 174
            +Y+KGGKG+LVKC+KERIVED+T+    CP CGQEFARDT+V G PAFKMIGGKV  K
Sbjct:   26 KYRKGGKGALVKCFKERIVEDYTQTPCFCPSCGQEFARDTLVRGTPAFKMIGGKVTMK 83          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: A0A0F5VFL2_9GAMM (Zn-ribbon motif protein n=1 Tax=Photobacterium halotolerans TaxID=265726 RepID=A0A0F5VFL2_9GAMM)

HSP 1 Score: 96.7 bits (239), Expect = 5.830e-25
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQK 174
            +Y+KGGKG+LVKC+KERIV+DFT    +CP C Q FAR+T++HG PAFKMIGGK +QK
Sbjct:   26 KYRKGGKGALVKCFKERIVKDFTRSACQCPNCEQTFARETLIHGTPAFKMIGGKAFQK 83          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: A0A1B1EK53_VIBNA (Uncharacterized protein n=44 Tax=Vibrionaceae TaxID=641 RepID=A0A1B1EK53_VIBNA)

HSP 1 Score: 96.3 bits (238), Expect = 8.290e-25
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQK 174
            +Y+KGGKG+LVKC+KERIVEDFT+    CPGC QEFARDT+V G PA+KMIGGKV  K
Sbjct:   26 KYRKGGKGALVKCFKERIVEDFTQTPCICPGCQQEFARDTLVRGTPAYKMIGGKVTMK 83          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: A0A0M0I516_9VIBR (Uncharacterized protein n=4 Tax=Vibrionaceae TaxID=641 RepID=A0A0M0I516_9VIBR)

HSP 1 Score: 96.3 bits (238), Expect = 8.290e-25
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQK 174
            +Y+KGGKG+LVKC+KERIVEDFT    +CP CGQEFARDT+V G PA+K+IGGKV  K
Sbjct:   26 KYRKGGKGALVKCFKERIVEDFTTESCKCPSCGQEFARDTLVRGTPAYKIIGGKVTMK 83          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: A0A0H0YN86_VIBAL (Uncharacterized protein n=32 Tax=Vibrionaceae TaxID=641 RepID=A0A0H0YN86_VIBAL)

HSP 1 Score: 95.9 bits (237), Expect = 1.180e-24
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQK 174
            +Y+KGGKG+LVKC+KERIV+DFT+    CP CGQEFARDT+V G PA+KMIGGKV  K
Sbjct:   26 KYRKGGKGALVKCFKERIVDDFTQTPCICPACGQEFARDTLVRGTPAYKMIGGKVTMK 83          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: E8LTK8_9VIBR (Uncharacterized protein n=5 Tax=Vibrionaceae TaxID=641 RepID=E8LTK8_9VIBR)

HSP 1 Score: 95.9 bits (237), Expect = 1.180e-24
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQK 174
            +Y+KGGKG+LVKC+KERIVED+TE    CPGCG EFARDT+V G PAFK+IGGKV  K
Sbjct:   26 KYRKGGKGALVKCFKERIVEDYTEKPCFCPGCGCEFARDTLVRGTPAFKIIGGKVTMK 83          
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Match: A0A7V7N300_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7V7N300_9PROT)

HSP 1 Score: 94.7 bits (234), Expect = 3.380e-24
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKMIGGKVYQK 174
            +Y+KGGKG+LVKC+KERI +DFT     CP CGQEFARDT+V G PA+KMIGGKV+ K
Sbjct:   26 KYRKGGKGALVKCFKERISQDFTNKPCHCPECGQEFARDTLVRGTPAYKMIGGKVFAK 83          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9792.17770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNB7_ECTSI2.440e-3391.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1E8F9C3_9ALTE4.990e-2670.69Uncharacterized protein n=10 Tax=Alteromonadales T... [more]
A0A0G4GPL3_VITBC3.790e-2574.58Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A072L8R7_VIBPH4.110e-2572.41Uncharacterized protein n=48 Tax=Vibrio parahaemol... [more]
A0A0F5VFL2_9GAMM5.830e-2567.24Zn-ribbon motif protein n=1 Tax=Photobacterium hal... [more]
A0A1B1EK53_VIBNA8.290e-2572.41Uncharacterized protein n=44 Tax=Vibrionaceae TaxI... [more]
A0A0M0I516_9VIBR8.290e-2570.69Uncharacterized protein n=4 Tax=Vibrionaceae TaxID... [more]
A0A0H0YN86_VIBAL1.180e-2470.69Uncharacterized protein n=32 Tax=Vibrionaceae TaxI... [more]
E8LTK8_9VIBR1.180e-2472.41Uncharacterized protein n=5 Tax=Vibrionaceae TaxID... [more]
A0A7V7N300_9PROT3.380e-2468.97Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9792contigS-dermatodea_contig9792:7842..8021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue8.9e-26
Seed eggNOG ortholog2880.D7FNB7
EggNOG OGs2CE38@1,2SART@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_000170.1
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.4298382-CDS-S-dermatodea_contig9792:7841..80211622925431.4298382-CDS-S-dermatodea_contig9792:7841..8021Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9792 7842..8021 -
1694079929.0678518-CDS-S-dermatodea_contig9792:7841..80211694079929.0678518-CDS-S-dermatodea_contig9792:7841..8021Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9792 7842..8021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9792.17770.1prot_S-dermatodea_contig9792.17770.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9792 7842..8021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9792.17770.1

>prot_S-dermatodea_contig9792.17770.1 ID=prot_S-dermatodea_contig9792.17770.1|Name=mRNA_S-dermatodea_contig9792.17770.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
RYKKGGKGSLVKCYKERIVEDFTEGKLECPGCGQEFARDTMVHGKPAFKM
IGGKVYQKK*
back to top

mRNA from alignment at S-dermatodea_contig9792:7842..8021-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9792.17770.1 ID=mRNA_S-dermatodea_contig9792.17770.1|Name=mRNA_S-dermatodea_contig9792.17770.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at S-dermatodea_contig9792:7842..8021- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTATAAGAAGGGAGGCAAAGGCTCGCTGGTGAAGTGCTACAAAGAGCG CATCGTTGAGGACTTCACGGAAGGCAAGCTCGAGTGTCCCGGCTGCGGAC AGGAGTTCGCAAGAGACACAATGGTGCACGGAAAGCCAGCCTTCAAGATG ATCGGCGGCAAGGTCTACCAAAAGAAGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9792:7842..8021-

>mRNA_S-dermatodea_contig9792.17770.1 ID=mRNA_S-dermatodea_contig9792.17770.1|Name=mRNA_S-dermatodea_contig9792.17770.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig9792:7842..8021- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTATAAGAAGGGAGGCAAAGGCTCGCTGGTGAAGTGCTACAAAGAGCG
CATCGTTGAGGACTTCACGGAAGGCAAGCTCGAGTGTCCCGGCTGCGGAC
AGGAGTTCGCAAGAGACACAATGGTGCACGGAAAGCCAGCCTTCAAGATG
ATCGGCGGCAAGGTCTACCAAAAGAAGTGAAGGTATAAGAAGGGAGGCAA
AGGCTCGCTGGTGAAGTGCTACAAAGAGCGCATCGTTGAGGACTTCACGG
AAGGCAAGCTCGAGTGTCCCGGCTGCGGACAGGAGTTCGCAAGAGACACA
ATGGTGCACGGAAAGCCAGCCTTCAAGATGATCGGCGGCAAGGTCTACCA
AAAGAAGTGA
back to top