mRNA_S-dermatodea_contig979.17768.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig979.17768.1
Unique NamemRNA_S-dermatodea_contig979.17768.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig979.17768.1 vs. uniprot
Match: D7G448_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G448_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.280e-10
Identity = 30/47 (63.83%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GKCCPPAPLENKGVMFVVYRRLNAGRSLLLPLCTTGRILWWGLACFF 141
            GK  PPAPL+NKGVMFVVYRRLNAGRSLLL     G     G+   F
Sbjct:   15 GKSFPPAPLKNKGVMFVVYRRLNAGRSLLLATLYDGEDTSVGVGLVF 61
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig979.17768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G448_ECTSI2.280e-1063.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig979contigS-dermatodea_contig979:20588..20760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003690.1
Exons1
Model size173
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.3117542-CDS-S-dermatodea_contig979:20587..207551622925431.3117542-CDS-S-dermatodea_contig979:20587..20755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 20588..20755 -
1694079929.0061352-CDS-S-dermatodea_contig979:20587..207551694079929.0061352-CDS-S-dermatodea_contig979:20587..20755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig979 20588..20755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.3286488-UTR-S-dermatodea_contig979:20755..207601622925431.3286488-UTR-S-dermatodea_contig979:20755..20760Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig979 20756..20760 -
1694079929.014289-UTR-S-dermatodea_contig979:20755..207601694079929.014289-UTR-S-dermatodea_contig979:20755..20760Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig979 20756..20760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig979.17768.1prot_S-dermatodea_contig979.17768.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig979 20588..20755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig979.17768.1

>prot_S-dermatodea_contig979.17768.1 ID=prot_S-dermatodea_contig979.17768.1|Name=mRNA_S-dermatodea_contig979.17768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
MLPPGSPREQGRDVRGVSAPKRRSLTFVATLYDGEDTLVGVGLFFCLKYG
GRYIP*
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mRNA from alignment at S-dermatodea_contig979:20588..20760-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig979.17768.1 ID=mRNA_S-dermatodea_contig979.17768.1|Name=mRNA_S-dermatodea_contig979.17768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=173bp|location=Sequence derived from alignment at S-dermatodea_contig979:20588..20760- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAAATGTTGCCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGT
GGTGTATCGGCGCCTAAACGCCGGTCGCTCACTTTTGTTGCCACTTTGTA
CGACGGGGAGGATACTTTGGTGGGGGTTGGCTTGTTTTTTTGTTTGAAGT
ACGGAGGAAGATACATCCCTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig979:20588..20760-

>mRNA_S-dermatodea_contig979.17768.1 ID=mRNA_S-dermatodea_contig979.17768.1|Name=mRNA_S-dermatodea_contig979.17768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig979:20588..20760- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTGCCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGTGGTGT
ATCGGCGCCTAAACGCCGGTCGCTCACTTTTGTTGCCACTTTGTACGACG
GGGAGGATACTTTGGTGGGGGTTGGCTTGTTTTTTTGTTTGAAGTACGGA
GGAAGATACATCCCTTGAATGTTGCCCCCCGGCTCCCCTCGAGAACAAGG
GCGTGATGTTCGTGGTGTATCGGCGCCTAAACGCCGGTCGCTCACTTTTG
TTGCCACTTTGTACGACGGGGAGGATACTTTGGTGGGGGTTGGCTTGTTT
TTTTGTTTGAAGTACGGAGGAAGATACATCCCTTGA
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