mRNA_S-dermatodea_contig9777.17762.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9777.17762.1
Unique NamemRNA_S-dermatodea_contig9777.17762.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9777.17762.1 vs. uniprot
Match: A0A6H5LKZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKZ1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.890e-16
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:   31 EAAAAEEVLGDIPEDVLEAARECAAYEDVSGVITDVYSARYGTDGAESATKVPPWIQQMAALARLVGDSD 240
            E  AA   + D+PEDVL+ A+EC  YEDVSGVIT VY+ARYGTD A  A  VP W++QMA+LARL G +D
Sbjct:  528 EVEAAAVAVRDMPEDVLKVAKECVVYEDVSGVITAVYAARYGTDAAGKAPAVPLWVRQMASLARLAGRTD 597
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9777.17762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LKZ1_9PHAE4.890e-1661.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9777contigS-dermatodea_contig9777:3362..4682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size500
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925430.7016437-CDS-S-dermatodea_contig9777:3361..37101622925430.7016437-CDS-S-dermatodea_contig9777:3361..3710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9777 3362..3710 -
1694079928.5792885-CDS-S-dermatodea_contig9777:3361..37101694079928.5792885-CDS-S-dermatodea_contig9777:3361..3710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9777 3362..3710 -
1622925430.7140071-CDS-S-dermatodea_contig9777:4533..46821622925430.7140071-CDS-S-dermatodea_contig9777:4533..4682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9777 4534..4682 -
1694079928.5896535-CDS-S-dermatodea_contig9777:4533..46821694079928.5896535-CDS-S-dermatodea_contig9777:4533..4682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9777 4534..4682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9777.17762.1prot_S-dermatodea_contig9777.17762.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9777 3362..4682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9777.17762.1

>prot_S-dermatodea_contig9777.17762.1 ID=prot_S-dermatodea_contig9777.17762.1|Name=mRNA_S-dermatodea_contig9777.17762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=166bp
GNEDEDETAAEAAAAEEVLGDIPEDVLEAARECAAYEDVSGVITDVYSAR
YGTDGAESATKVPPWIQQMAALARLVGDSDNTNTSTSANASASASPVSSH
EDEKVPPKADGASATAGDDEDGGGDGHSGDGGDGGGDDLPLLGGGATSER
SSLSGGGLSPRGGGGG
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mRNA from alignment at S-dermatodea_contig9777:3362..4682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9777.17762.1 ID=mRNA_S-dermatodea_contig9777.17762.1|Name=mRNA_S-dermatodea_contig9777.17762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1321bp|location=Sequence derived from alignment at S-dermatodea_contig9777:3362..4682- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAATGAGGATGAGGACGAGACGGCGGCAGAGGCGGCGGCGGCGGAAGA
GGTGCTGGGAGATATTCCGGAGGACGTGCTGGAGGCGGCGAGGGAGTGCG
CGGCGTACGAGGACGTGAGCGGGGTCATCACGGACGTTTATTCTGCCAGG
TGTGTGGCTGTGTTGTTGTGTTTGTGTTTGTGTGTGTGTTGTTTTTTTTC
TTGTTTTTTTTTCTCGAAATTAGTATTTCATGTTGCGGTTAGTACGCTCC
CACTGCAGTCGGCAGGTGATGCTTGTGTTTGTCGGCGGGCGGGCGGGCGG
GAGGTGTTTGATGTACCGTGTGAGGTCGGTATTGTTGTTGCTGTTGTTGT
TGTTGTTGTTATCGTTGTTGTTGCCTCTGTATCTCTAGTAACACCGGTGT
ATGTGTTCCTTCCTCGAGCGTACTACTGTTCTTTTTACTCGAGTTTTGTG
TCACAGGTTTCCCGCTGGAGGCACACAATGTCGGCGCTTAGTGCCTGGTT
TGCTTAAGACACGACCCCATCAGGTCCCCCCTCCATCCGATGCCTCCTAT
CGTCCCACCCCTCCTCAGCCGCCACAGTAATTCAACGAAATAGGCGTCNN
NNNNNNNNTGTTTTCCCGGTGTTCCCCCTGGGGCCCCCCAATGTGGCGCC
TTTGTGTCCGGTTTTCTTAAGACCCCCCCCCCCCCCCCCCCCCCCGCCCG
CCACCCGTCAGCCTGAAAAGGTGCAACATTTGGTTGTCCGGTATGTCCAA
TCAATCCATGGCATATCGTTTGGCGTCGCAAACGCAGGGATGATGACCAG
CAGCGGGTATAGTCCTTGTGAAACGCAGCCTGGCCGGCGAAAACCCGGCA
TATCGCTCCGTCCCGGCACTGCTGGGATACGGGGTCTATATCCTTCTGGA
TACGGCATGCGTTTAACATAAGCACCCCCCCCACCCCCGCCCCCACACTG
GATGTTGCGCGAATCGCGGCAGGTACGGAACAGACGGGGCGGAGAGCGCC
ACAAAGGTTCCCCCCTGGATACAGCAGATGGCCGCCCTCGCCCGCCTCGT
CGGCGATAGTGACAACACCAACACCAGCACCAGCGCCAACGCCAGCGCCA
GCGCCAGCCCCGTGAGCTCGCACGAGGATGAAAAGGTGCCCCCGAAGGCC
GATGGAGCTAGCGCGACGGCCGGGGATGATGAGGATGGGGGTGGTGACGG
CCACAGCGGCGATGGCGGTGATGGTGGTGGCGACGACCTTCCTCTTCTTG
GCGGCGGAGCGACAAGCGAGCGATCATCGCTGTCGGGGGGAGGGCTGAGC
CCGCGTGGGGGCGGAGGAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9777:3362..4682-

>mRNA_S-dermatodea_contig9777.17762.1 ID=mRNA_S-dermatodea_contig9777.17762.1|Name=mRNA_S-dermatodea_contig9777.17762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at S-dermatodea_contig9777:3362..4682- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAATGAGGATGAGGACGAGACGGCGGCAGAGGCGGCGGCGGCGGAAGA
GGTGCTGGGAGATATTCCGGAGGACGTGCTGGAGGCGGCGAGGGAGTGCG
CGGCGTACGAGGACGTGAGCGGGGTCATCACGGACGTTTATTCTGCCAGG
GAAATGAGGATGAGGACGAGACGGCGGCAGAGGCGGCGGCGGCGGAAGAG
GTGCTGGGAGATATTCCGGAGGACGTGCTGGAGGCGGCGAGGGAGTGCGC
GGCGTACGAGGACGTGAGCGGGGTCATCACGGACGTTTATTCTGCCAGGT
ACGGAACAGACGGGGCGGAGAGCGCCACAAAGGTTCCCCCCTGGATACAG
CAGATGGCCGCCCTCGCCCGCCTCGTCGGCGATAGTGACAACACCAACAC
CAGCACCAGCGCCAACGCCAGCGCCAGCGCCAGCCCCGTGAGCTCGCACG
AGGATGAAAAGGTGCCCCCGAAGGCCGATGGAGCTAGCGCGACGGCCGGG
GATGATGAGGATGGGGGTGGTGACGGCCACAGCGGCGATGGCGGTGATGG
TGGTGGCGACGACCTTCCTCTTCTTGGCGGCGGAGCGACAAGCGAGCGAT
CATCGCTGTCGGGGGGAGGGCTGAGCCCGCGTGGGGGCGGAGGAGGCGTA
CGGAACAGACGGGGCGGAGAGCGCCACAAAGGTTCCCCCCTGGATACAGC
AGATGGCCGCCCTCGCCCGCCTCGTCGGCGATAGTGACAACACCAACACC
AGCACCAGCGCCAACGCCAGCGCCAGCGCCAGCCCCGTGAGCTCGCACGA
GGATGAAAAGGTGCCCCCGAAGGCCGATGGAGCTAGCGCGACGGCCGGGG
ATGATGAGGATGGGGGTGGTGACGGCCACAGCGGCGATGGCGGTGATGGT
GGTGGCGACGACCTTCCTCTTCTTGGCGGCGGAGCGACAAGCGAGCGATC
ATCGCTGTCGGGGGGAGGGCTGAGCCCGCGTGGGGGCGGAGGAGGC
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