mRNA_S-dermatodea_contig9775.17758.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9775.17758.1
Unique NamemRNA_S-dermatodea_contig9775.17758.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: D8LFS9_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS9_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 1.390e-127
Identity = 183/240 (76.25%), Postives = 207/240 (86.25%), Query Frame = 1
Query:    1 EALVTVDSAKGTPLEGLSEAGAREDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEELELPSG----GGASTAGDALEGFLTKEAYLWALGTVWSRFVTVELEGRALKAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELWSVMQEGAPCYAAKSKVRSGEG 708
            EAL+TVDSAKGTP EGL EAGAREDDVLCLLLLYHR++L ERSP K H+D LP EYHQTIFYSD+E+ELLRGTSLHAVT QWK+QV +DFRELE L LPS     GG+STA DALEGFLTKE YLWALGTVWSRFVTVE  GR LKAMAPVFDMFNH P+SSTVHG+QE+N CLHLVTLQ+W +G+EV+FSYGPL NSRLLLLHGFCLPDN F++VELW++M+ GAP +A K+K+    G
Sbjct:   59 EALMTVDSAKGTPFEGLMEAGAREDDVLCLLLLYHRHILKERSPLKGHMDVLPREYHQTIFYSDDELELLRGTSLHAVTVQWKAQVDTDFRELEALPLPSPRSEEGGSSTARDALEGFLTKEEYLWALGTVWSRFVTVERAGRGLKAMAPVFDMFNHGPLSSTVHGYQESNDCLHLVTLQDWASGSEVKFSYGPLPNSRLLLLHGFCLPDNPFESVELWAMMEPGAPGFAEKNKIMLDNG 298          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: A0A6H5KQN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN9_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 8.010e-60
Identity = 100/131 (76.34%), Postives = 109/131 (83.21%), Query Frame = 1
Query:    1 EALVTVDSAKGTPLEGLSEAGAREDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEELELPSG----GGASTAGDALEGFLTKEAYLWALGTV 381
            EAL+TVDSAKGTP EGL EAGAREDDVLCLLLLYHR++L ERSP K H+D LP EYHQTIFYSD+E+E LRGTSLHAVT QWK+QV +DFRELE L L S     GG+ST  D LEGFLTKE YLWALGTV
Sbjct:   59 EALMTVDSAKGTPFEGLMEAGAREDDVLCLLLLYHRHILKERSPLKGHMDVLPREYHQTIFYSDDELEPLRGTSLHAVTVQWKAQVDTDFRELEALPLSSPRSEEGGSSTVRDVLEGFLTKEEYLWALGTV 189          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: A0A024UBV8_9STRA (SET domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBV8_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.190e-55
Identity = 103/241 (42.74%), Postives = 142/241 (58.92%), Query Frame = 1
Query:    1 EALVTVDSAKGTPLEGLSEAGAREDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEELELPSGGG---ASTAGDALEGFLTKEAYLWALGTVWSRFVTVEL--EGRALKAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELWSVMQEGAPCYAAKSKVRSGEG 708
            E+L+ V +   + L  L+    REDD L   L+Y R V N +S +KRHLD LP  +H  ++++++E+ +L+G++++ V  Q K QV SDF EL++  LP       A  + D L    T E Y WAL  +WSRFV+V L  E    K+M PVFDMFNHDP +   HGF  T     L + Q W AG++V  +YG L N +LL L+GF LP N FD VELW+ M + AP Y  K  + +G G
Sbjct:   55 ESLLNVHTMTQSALRDLASLPLREDDCLAWFLIYERFV-NPQSKWKRHLDVLPHSFHNILYFTEDEINMLQGSNVYYVALQLKQQVVSDFAELQQTLLPDTLRLLHAEHSADVLMAVFTLENYKWALSVIWSRFVSVALDAEDNLAKSMVPVFDMFNHDPHAQMSHGFDPTTNAFVLRSHQHWTAGSQVCINYGALPNHKLLTLYGFVLPSNPFDVVELWAPMSDDAPYYNRKLALMTGHG 294          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: A0A6G0WXU3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXU3_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.560e-53
Identity = 99/240 (41.25%), Postives = 142/240 (59.17%), Query Frame = 1
Query:    1 EALVTVDSAKGTPLEGLSEAGAREDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEELELPSGGGASTAGDALEGFLTK---EAYLWALGTVWSRFVTVEL-EGRALKAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELWSVMQEGAPCYAAKSKVRSGEG 708
            E+L+ V S   +PL+       REDD+L   L+Y  N LN +S +KRHLD LP +YH  ++++ +E++LL G +++ +  Q + QV +DF EL++  +P      +   + E  LT    E Y WAL  +WSRFV+V L E    K+M PVFDMFNHDP++   HGF  +     L +   W +G++V  +YG L N +LL L+GF L  N FD+VELW+ M E AP Y  K K+  G G
Sbjct:   56 ESLLNVHSIASSPLQNFLSLPLREDDLLAWFLIYE-NFLNPQSKWKRHLDVLPKKYHNILYFTTKEIDLLAGCNIYHIALQLQQQVDADFAELQQTLVPDTLRLLSGEFSTEVLLTAFSIENYKWALSVIWSRFVSVALDEDNLAKSMVPVFDMFNHDPLAQMTHGFDPSTNSFVLRSHLHWSSGSQVFINYGALPNHKLLTLYGFVLASNPFDSVELWAPMGEDAPYYNRKIKLMEGHG 294          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: W4G0U4_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0U4_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.030e-50
Identity = 99/247 (40.08%), Postives = 139/247 (56.28%), Query Frame = 1
Query:    7 LVTVDSAKGTPLEGLSEAGAREDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEELELPSGGG---ASTAGDALEGFLTKEAYLWALGTVWSRFVTVELEGRA----------LKAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELWSVMQEGAPCYAAKSKVRSGEG 708
            L+ V +   + L  L     REDD L   L+Y R V N +S +KRHLD +P  +H  ++++++E+ +L+G++++ V  Q K QVASDF EL+   LP+      A  + D L    T E Y WAL  +WSRFV++ +   A          +K+M PVFDMFNHDP +   HGF  T     L + Q W AG++V  +YG L N +LL L+GF LP N FD VELW+ M E  P Y  K  + +  G
Sbjct:   57 LLNVHTMAQSVLRDLVSLPLREDDCLAWFLIYERFV-NPQSKWKRHLDVMPQAFHNILYFTEDEINMLQGSNVYYVALQLKQQVASDFGELQRTLLPTTLRLLHADHSADDLIRVFTIENYKWALSVIWSRFVSIAIHATAADXXXXXXAAVKSMVPVFDMFNHDPFAQMSHGFDPTTNSFVLRSHQHWPAGSQVYMNYGALPNHKLLTLYGFVLPSNPFDVVELWAPMHEDVPSYDRKLALLTAHG 302          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: A0A1V9YVA9_9STRA (SET domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YVA9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.720e-49
Identity = 97/240 (40.42%), Postives = 134/240 (55.83%), Query Frame = 1
Query:    1 EALVTVDSAKGTPLEGLSEAGAREDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEELELPSGGGAST---AGDALEGFLTKEAYLWALGTVWSRFVTVELEGRAL-KAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELWSVMQEGAPCYAAKSKVRSGEG 708
            E+L+ + S   +PL  +     REDD L   L+Y    LN  S + RHL  LP ++H  ++++D+++ LL+G++++ V  Q + QV SDF EL+   LP    A     + DA+    T E Y WAL  +WSRFV+V     ++ K M PVFDMFNHDP +   HGF    Q   L + Q W  G +V  +YG L N +LL L+GF L  N +D VELW+ M E AP YA K    S  G
Sbjct:   53 ESLLNLYSIAQSPLREIPHLHEREDDCLAWFLMYE-TFLNPNSKWARHLQVLPKDFHNILYFADDDIALLQGSNVYYVARQLQQQVVSDFDELKVTILPETLRALADDFSSDAILAAFTLENYKWALSVIWSRFVSVATSTDSMVKCMVPVFDMFNHDPSAQMAHGFDPRTQAFVLQSHQYWAPGTQVFINYGALPNHKLLTLYGFVLAKNPYDTVELWAPMSEDAPYYARKMAFISAHG 291          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: A0A485L3E1_9STRA (Aste57867_15011 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3E1_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.340e-49
Identity = 97/240 (40.42%), Postives = 141/240 (58.75%), Query Frame = 1
Query:    1 EALVTVDSAKGTPLEGLSEAGAREDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEELELPSGGGASTAGDALEGFL---TKEAYLWALGTVWSRFVTVELEGRAL-KAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELWSVMQEGAPCYAAKSKVRSGEG 708
            E+L+ V +   +PL+ L      EDD+L   L+Y    LN  S +KRHLD LP  +H  ++++ +E+++L G++++ V  Q + QVASDF  L++  LP      +A  + E  L   +   Y WAL  +WSRFV+V L+   L K+M PVFDMFNHDP +   HGF  T     L T Q W AG+++  +YG L N +LL L+GF L  N FDAVEL++ M E AP ++ K ++    G
Sbjct:   55 ESLLNVHTMAQSPLKDLLSLPLCEDDMLAWFLMYE-TFLNPSSKWKRHLDVLPKTFHNILYFTQDEIDMLEGSNVYYVAMQLQKQVASDFAALQQTLLPDTLRLLSADFSAETLLDAFSMNHYKWALSVIWSRFVSVALDEDILAKSMVPVFDMFNHDPTAQMTHGFDPTTNSFVLRTHQHWSAGSQIFINYGALPNHKLLPLYGFVLASNPFDAVELYAPMGEDAPDFSRKLELLEDHG 293          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: A0A0W8DEW1_PHYNI (Fimbrin n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DEW1_PHYNI)

HSP 1 Score: 162 bits (411), Expect = 3.110e-45
Identity = 83/211 (39.34%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   67 REDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEE---LELPSGGGASTAGDALEGFLTKEAYLWALGTVWSRFVTVELEG---------------RALKAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELW 645
            REDD L L LLY + V  ++S + +H++ LP  YH  +++  EE++ L G++L  + +Q + +VA+D+  L+E   LEL          D  + F + + Y WAL T+WSRFV++ L+                ++ KAM PVFDM NHDP +   H F    Q   LV+ Q W AG ++  +YGPLSN +LLLL+GF +  N FDAVE+W
Sbjct:   96 REDDQLALALLYEKFVQGDKSKWAKHIELLPKTYHNALYFEQEEIKALEGSNLFFIAQQMEKKVAADYTSLKETVLLELFENITEGITVDLFDDFFSLDNYKWALSTIWSRFVSLRLDEAPSSKDSSSSVPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMDTQLFKLVSHQHWNAGTQMFINYGPLSNHKLLLLYGFVIIGNPFDAVEMW 306          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: A0A0W8CD61_PHYNI (Ribosomal N-lysine methyltransferase set10 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CD61_PHYNI)

HSP 1 Score: 165 bits (418), Expect = 6.050e-45
Identity = 85/218 (38.99%), Postives = 125/218 (57.34%), Query Frame = 1
Query:   67 REDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEE---LELPSGGGASTAGDALEGFLTKEAYLWALGTVWSRFVTVELEG---------------RALKAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELWSVMQEGA 666
            REDD L L LLY + V  ++S + +H++ LP  YH  +++  EE++ L G++L  + +Q + +VA+D+  L+E   LEL          D  + F + + Y WAL T+WSRFV++ L+                ++ KAM PVFDM NHDP +   H F    Q   LV+ Q W AG ++  +YGPLSN +LLLL+GF +  N FDAVE+W  M E +
Sbjct:   96 REDDQLALALLYEKFVQGDKSKWAKHIELLPKTYHNALYFEQEEIKALEGSNLFFIAQQMEKKVAADYTSLKETVLLELFENITEGITVDLFDDFFSLDNYKWALSTIWSRFVSLRLDEAPSSKDSSSSVPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMDTQLFKLVSHQHWNAGTQMFINYGPLSNHKLLLLYGFVIIGNPFDAVEMWLPMDEAS 313          
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Match: W2KAV5_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KAV5_PHYPR)

HSP 1 Score: 165 bits (418), Expect = 6.050e-45
Identity = 85/218 (38.99%), Postives = 125/218 (57.34%), Query Frame = 1
Query:   67 REDDVLCLLLLYHRNVLNERSPFKRHLDALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEE---LELPSGGGASTAGDALEGFLTKEAYLWALGTVWSRFVTVELEG---------------RALKAMAPVFDMFNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLHGFCLPDNVFDAVELWSVMQEGA 666
            REDD L L LLY + V  ++S + +H++ LP  YH  +++  EE++ L G++L  + +Q + +VA+D+  L+E   LEL          D  + F + + Y WAL T+WSRFV++ L+                ++ KAM PVFDM NHDP +   H F    Q   LV+ Q W AG ++  +YGPLSN +LLLL+GF +  N FDAVE+W  M E +
Sbjct:   96 REDDQLALALLYEKFVQGDKSKWAKHIELLPKTYHNALYFEQEEIKALEGSNLFFIAQQMEKKVAADYTSLKETVLLELFENITEGITVDLFDDFFSLDNYKWALSTIWSRFVSLRLDEAPSSKDSSSSVPVAKQSFKAMVPVFDMLNHDPEAEMSHFFDMDTQLFKLVSHQHWNAGTQMFINYGPLSNHKLLLLYGFVIIGNPFDAVEMWLPMDEAS 313          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9775.17758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFS9_ECTSI1.390e-12776.25SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KQN9_9PHAE8.010e-6076.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024UBV8_9STRA4.190e-5542.74SET domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A6G0WXU3_9STRA4.560e-5341.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4G0U4_9STRA1.030e-5040.08Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A1V9YVA9_9STRA1.720e-4940.42SET domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A485L3E1_9STRA2.340e-4940.42Aste57867_15011 protein n=1 Tax=Aphanomyces stella... [more]
A0A0W8DEW1_PHYNI3.110e-4539.34Fimbrin n=1 Tax=Phytophthora nicotianae TaxID=4790... [more]
A0A0W8CD61_PHYNI6.050e-4538.99Ribosomal N-lysine methyltransferase set10 n=9 Tax... [more]
W2KAV5_PHYPR6.050e-4538.99Uncharacterized protein n=1 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9775contigS-dermatodea_contig9775:282..2896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.4
Seed ortholog evalue1.2e-102
Seed eggNOG ortholog2880.D8LFS9
Preferred nameSETD4
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K05662,ko:K19199
KEGG TC3.A.1.210
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,ko02010,map00310,map02010
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018026,GO:0018193,GO:0018205,GO:0019538,GO:0022613,GO:0031974,GO:0031981,GO:0032259,GO:0036211,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
Ec32 ortholog descriptionSET domain and Rubisco LSMT substrate-binding domain protein
Ec32 orthologEc-01_001070.1
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size708
Cds size708
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9775.17758.1prot_S-dermatodea_contig9775.17758.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9775 282..2896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925430.5608172-CDS-S-dermatodea_contig9775:281..6111622925430.5608172-CDS-S-dermatodea_contig9775:281..611Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9775 282..611 -
1694079928.4897912-CDS-S-dermatodea_contig9775:281..6111694079928.4897912-CDS-S-dermatodea_contig9775:281..611Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9775 282..611 -
1622925430.5718513-CDS-S-dermatodea_contig9775:1363..15511622925430.5718513-CDS-S-dermatodea_contig9775:1363..1551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9775 1364..1551 -
1694079928.5043056-CDS-S-dermatodea_contig9775:1363..15511694079928.5043056-CDS-S-dermatodea_contig9775:1363..1551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9775 1364..1551 -
1622925430.5832453-CDS-S-dermatodea_contig9775:2706..28961622925430.5832453-CDS-S-dermatodea_contig9775:2706..2896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9775 2707..2896 -
1694079928.5143578-CDS-S-dermatodea_contig9775:2706..28961694079928.5143578-CDS-S-dermatodea_contig9775:2706..2896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9775 2707..2896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9775.17758.1

>prot_S-dermatodea_contig9775.17758.1 ID=prot_S-dermatodea_contig9775.17758.1|Name=mRNA_S-dermatodea_contig9775.17758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=236bp
EALVTVDSAKGTPLEGLSEAGAREDDVLCLLLLYHRNVLNERSPFKRHLD
ALPSEYHQTIFYSDEEVELLRGTSLHAVTEQWKSQVASDFRELEELELPS
GGGASTAGDALEGFLTKEAYLWALGTVWSRFVTVELEGRALKAMAPVFDM
FNHDPVSSTVHGFQETNQCLHLVTLQEWKAGNEVRFSYGPLSNSRLLLLH
GFCLPDNVFDAVELWSVMQEGAPCYAAKSKVRSGEG
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mRNA from alignment at S-dermatodea_contig9775:282..2896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9775.17758.1 ID=mRNA_S-dermatodea_contig9775.17758.1|Name=mRNA_S-dermatodea_contig9775.17758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2615bp|location=Sequence derived from alignment at S-dermatodea_contig9775:282..2896- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGCTCTCGTGACGGTTGACAGCGCAAAGGGCACGCCTCTCGAGGGTTT GTCGGAGGCGGGCGCGAGAGAAGACGATGTGCTGTGCCTCCTTCTTTTGT ACCACCGCAATGTCCTCAACGAGCGCTCGCCGTTCAAGAGGCACCTGGAC GCCCTTCCCTCCGAGTACCACCAAACCATTTTCTACTCCGGTGAGTGTGC ATGCTTAACCCTTTTGGTACTAGCCCCCTGTTTGGAGCGCCTGTTAGCAC GTAATGAGGCGTGCTTGAAGCGGGGCCCTGGGGAACTCCATGGGTTATGA CGCAGGAATGAGAGAGAACGGAGCGCAAGGGAAACGGGGCTGTAGCTGTC GACTGGCATCGAGATAATGTTTTGGTCGTTTCGGAGAGCCCTATTCATAC TATATTATAGTACTAATGTAATAGTACCGAAAGGGTTAAAATGCTCTCGT TTCTTTCTTTCCGGTGGGCTTTCTTTGCTTTTGTTTTTTTCAAGATCACA CTTACAACCGATCGCCCCCCCCCCCACCAATGGTCGACGATCCCACTCAC GGTGATATAAAAAAAAACGAAGCTCTGTATTCAGACTATATAATATACAG TGAAATAACACCACGCTCGGAATTAGATGTACGCGCACAATTGTACGAAC CGCGTGGCGCGCTAGGGCTTTTGTGCAATCGTTTGCGGCAGTAGGGTTAA GCTCCTGGCGTTCCGTTTGCCACGAGTGTTGTCACCAGGCAAGGTCGTCG GGGGGGGGGGGGGGGGGGGGGGGGGGAGTTATTTTTTTTTTGGGGGGGGG GTCGGGGGTGTGTGTGTACGTGTACTCCTGNNNNNNNNNNTTTGTGCAAA TTTGGTTGGGTAGGGAGTTTATGCCTTGGGTTCTTCTTTTTGCAGGGTTT TTGACCCACGGGAGGGGTGGGGGGGGGGGGGGGGGGGGGGGGAGGGCGTA GTCAATTTTTGCATGCCTTCACTCTTAGAGAAGTATCCACGCGTCCCCGG GAGGACGGAGCATGGTTCCCACGGGATCGATCGATCGCCGATGGCCAATC GTTCCTTCCTCCTGTGCCAACTGTGGCGCAAAAACAAATCCTGTCCTGTC TACTTGTACAGTGCTGGTCTGCAGCAATTATCAATTCTCAGGTCTCAGGC AGCTTACTATTATTTCCCAGTATTACTACCGCCTTCGTCTGGCTAGAGGC GTGGGCGGCGGGGGGGGGGGCGTTCACGTGTTCGTGTCAGCGTCCTCGAA AAACTGCGAGGATCAGCGAACCATCTTCGCGCGAGCAAACACGCCTTCGA ACGCGCTCGCCCGTGTCAAACCTCAAGCTTTCTCCCCGTGAACAGACGAG GAAGTGGAACTGCTGAGGGGCACCAGCCTCCACGCCGTGACGGAGCAGTG GAAATCCCAGGTCGCGAGCGACTTCCGAGAGCTGGAGGAGTTGGAGCTCC CCTCCGGAGGCGGCGCCTCGACCGCCGGAGATGCCCTGGAGGGATTTCTA ACCAAGGAAGCATACCTGTGGGCGCTCGGAACGGTGCGTTTGGTAAAATG TAGATATTTGAGATTTTCCGGTTTGTTAGCAAAGCCTTGTGCGGGTGGGG ATGGCGGGGTGGGGATGGGGGGGTGGGGGGGGGTGGGTGCTGATGTTCAA CGCGTGTTGTATGCAAACGGACATATACGATACATCCCAACAATGCCGGG ACTGAGCGTTACGCCCGGTTTTCGCCGGCCAGGGTTATTTCTGAAAGATG ATACCAGCTGCTAGTCGTCATCCTTGAGTTTGCGACGCCAAACCGGATAT GTCATGGGTTGATAGACGGAAGGGGGGGGGGGTGGGGGCGTTTCGGTTTT GGGCTTGCAATGGACGAGGCGCGGGCAGGTGCTGGTGCTTTCAAAATGGA AAAAGTAGGCGCCTGGTAGAGGGGTTGTTTGGTGTGTGTAGGGCGGTCTT ACGCGGTGGAGAGGGGGGCAAGGGGAAGCTTGAGATCGAGGCAAAGCGTT AACTTCGAGGCGTTCAAAAATGGTTCAAAGAACGTCGGCGGGTGGTTCTT CCGAAGGACACACTACTGCAGGCTGTCATGTGCGAACGTTTCAGCACGGC GGAGCGCGTGTGCGACGCCGCTCGCAGCGCACATGTCCTGCGTGTATGTG CATGTGAGCCACGGTTTGCATTTGCGTGTCGTGTGTGTAGCCTCAGTTCG CAATGGCTTCGGACGATTAGCGCTGCACAAATTTCTTAACGGTTGTCCTG TTCCTTTCCCTCTCCCGCCTTGTGGGGGCCGCAAGGTTTGGAGCCGCTTC GTCACCGTCGAGCTCGAGGGCCGCGCGCTGAAGGCCATGGCCCCAGTGTT CGACATGTTCAACCACGACCCGGTCTCCTCCACGGTCCACGGCTTTCAGG AGACCAATCAGTGCCTTCACCTCGTGACCCTGCAGGAATGGAAGGCCGGG AACGAGGTTCGGTTCAGCTACGGCCCCCTGTCGAACTCTCGGCTTCTCCT CTTGCACGGATTCTGTCTGCCGGACAACGTGTTTGATGCGGTCGAGCTGT GGTCAGTGATGCAGGAAGGGGCCCCTTGCTACGCCGCGAAAAGCAAGGTT CGGTCGGGCGAGGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9775:282..2896-

>mRNA_S-dermatodea_contig9775.17758.1 ID=mRNA_S-dermatodea_contig9775.17758.1|Name=mRNA_S-dermatodea_contig9775.17758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at S-dermatodea_contig9775:282..2896- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGCTCTCGTGACGGTTGACAGCGCAAAGGGCACGCCTCTCGAGGGTTT
GTCGGAGGCGGGCGCGAGAGAAGACGATGTGCTGTGCCTCCTTCTTTTGT
ACCACCGCAATGTCCTCAACGAGCGCTCGCCGTTCAAGAGGCACCTGGAC
GCCCTTCCCTCCGAGTACCACCAAACCATTTTCTACTCCGGAGGCTCTCG
TGACGGTTGACAGCGCAAAGGGCACGCCTCTCGAGGGTTTGTCGGAGGCG
GGCGCGAGAGAAGACGATGTGCTGTGCCTCCTTCTTTTGTACCACCGCAA
TGTCCTCAACGAGCGCTCGCCGTTCAAGAGGCACCTGGACGCCCTTCCCT
CCGAGTACCACCAAACCATTTTCTACTCCGACGAGGAAGTGGAACTGCTG
AGGGGCACCAGCCTCCACGCCGTGACGGAGCAGTGGAAATCCCAGGTCGC
GAGCGACTTCCGAGAGCTGGAGGAGTTGGAGCTCCCCTCCGGAGGCGGCG
CCTCGACCGCCGGAGATGCCCTGGAGGGATTTCTAACCAAGGAAGCATAC
CTGTGGGCGCTCGGAACGACGAGGAAGTGGAACTGCTGAGGGGCACCAGC
CTCCACGCCGTGACGGAGCAGTGGAAATCCCAGGTCGCGAGCGACTTCCG
AGAGCTGGAGGAGTTGGAGCTCCCCTCCGGAGGCGGCGCCTCGACCGCCG
GAGATGCCCTGGAGGGATTTCTAACCAAGGAAGCATACCTGTGGGCGCTC
GGAACGGTTTGGAGCCGCTTCGTCACCGTCGAGCTCGAGGGCCGCGCGCT
GAAGGCCATGGCCCCAGTGTTCGACATGTTCAACCACGACCCGGTCTCCT
CCACGGTCCACGGCTTTCAGGAGACCAATCAGTGCCTTCACCTCGTGACC
CTGCAGGAATGGAAGGCCGGGAACGAGGTTCGGTTCAGCTACGGCCCCCT
GTCGAACTCTCGGCTTCTCCTCTTGCACGGATTCTGTCTGCCGGACAACG
TGTTTGATGCGGTCGAGCTGTGGTCAGTGATGCAGGAAGGGGCCCCTTGC
TACGCCGCGAAAAGCAAGGTTCGGTCGGGCGAGGGAGTTTGGAGCCGCTT
CGTCACCGTCGAGCTCGAGGGCCGCGCGCTGAAGGCCATGGCCCCAGTGT
TCGACATGTTCAACCACGACCCGGTCTCCTCCACGGTCCACGGCTTTCAG
GAGACCAATCAGTGCCTTCACCTCGTGACCCTGCAGGAATGGAAGGCCGG
GAACGAGGTTCGGTTCAGCTACGGCCCCCTGTCGAACTCTCGGCTTCTCC
TCTTGCACGGATTCTGTCTGCCGGACAACGTGTTTGATGCGGTCGAGCTG
TGGTCAGTGATGCAGGAAGGGGCCCCTTGCTACGCCGCGAAAAGCAAGGT
TCGGTCGGGCGAGGGA
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