mRNA_S-dermatodea_contig9760.17745.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9760.17745.1
Unique NamemRNA_S-dermatodea_contig9760.17745.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9760.17745.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.080e-29
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 2 
Query:    2 LCSQGEEILGYVNPWLALVGPGATCTVAREVLDVFSGLLLMANRISQANRCVTLAQSLLSSIKGL-GTAATNDPRAAERDSQVLTRRSEVSGDG 280
            LCSQGEEILGY+NPWL L   GA+ TVAREVLDV  GLLL++NR+SQANRCVT+A SLLS++KGL G   +N  + AE+ +Q+LTRRSE   DG
Sbjct: 2816 LCSQGEEILGYINPWLTLQSAGASRTVAREVLDVLMGLLLVSNRVSQANRCVTMANSLLSALKGLHGQGGSN--QLAEKHAQILTRRSEALADG 2907
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BLAST of mRNA_S-dermatodea_contig9760.17745.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.500e-8
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 2 
Query:    2 LCSQGEEILGYVNPWLALVGPGATCTVAREVLDVFSGLLLMANRISQANRCVTLAQSLLSSIKGLGTAATNDPRAAERDSQVLTRRSEV 268
            LC+QGE IL Y+NP+ A  G     TVA E LD+    +L  +R+SQ  RC ++  +L+  +KGL   A+N         Q L R+SE 
Sbjct: 3509 LCTQGENILQYINPYTARAGQ----TVAGEALDLLVAYMLKTSRLSQVMRCSSMVAALIKELKGL--VASNGAGDRNNLYQGLARKSET 3591
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9760.17745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRI4_ECTSI2.080e-2965.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7Z7_9STRA3.500e-839.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9760contigS-dermatodea_contig9760:1620..2647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size286
Cds size285
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9760.17745.1prot_S-dermatodea_contig9760.17745.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9760 1620..2647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925429.7314746-CDS-S-dermatodea_contig9760:1619..16411622925429.7314746-CDS-S-dermatodea_contig9760:1619..1641Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9760 1620..1641 +
1694079927.9688075-CDS-S-dermatodea_contig9760:1619..16411694079927.9688075-CDS-S-dermatodea_contig9760:1619..1641Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9760 1620..1641 +
1622925429.7444162-CDS-S-dermatodea_contig9760:1922..20501622925429.7444162-CDS-S-dermatodea_contig9760:1922..2050Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9760 1923..2050 +
1694079927.9816682-CDS-S-dermatodea_contig9760:1922..20501694079927.9816682-CDS-S-dermatodea_contig9760:1922..2050Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9760 1923..2050 +
1622925429.7600203-CDS-S-dermatodea_contig9760:2512..26471622925429.7600203-CDS-S-dermatodea_contig9760:2512..2647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9760 2513..2647 +
1694079927.9979885-CDS-S-dermatodea_contig9760:2512..26471694079927.9979885-CDS-S-dermatodea_contig9760:2512..2647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9760 2513..2647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9760.17745.1

>prot_S-dermatodea_contig9760.17745.1 ID=prot_S-dermatodea_contig9760.17745.1|Name=mRNA_S-dermatodea_contig9760.17745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=95bp
LVLAGRRDTRLRQPVASLGRPRGYVHRCERGAGCLLGAAAHGQPDFAGQP
MRNACSESFVLHQGPGHSRNERSSSCGEGLASPHAQERGQWRWS*
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mRNA from alignment at S-dermatodea_contig9760:1620..2647+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9760.17745.1 ID=mRNA_S-dermatodea_contig9760.17745.1|Name=mRNA_S-dermatodea_contig9760.17745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1028bp|location=Sequence derived from alignment at S-dermatodea_contig9760:1620..2647+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGTGCTCGCAGGGCGAAGAGGTGAGAGCGTGCTAAACCCGTTTGTTTG
GCACCCGAGCTGGTTAAGACAAACAAAGCAGACACCAAAGGTATACCCGG
CGTCGGCAACTTTTTGAAGCCCTCCGCCGTCGATCGTTTTAGTGGTGTAG
GTGAAGCCGGTGCGGTATGCTTGTCCTGCGTACGTCAGTCTTACGTAGGT
TCACCGTTTCGAGGGCGGCATTCGAACCGCAACCGCCGCGAGTCGTTTCG
CTGACACGTACGCTATCGTGTGCCGCCATGCTTTTTGGTACCCCCGACGG
CAGATACTCGGCTACGTCAACCCGTGGCTAGCCTTGGTAGGCCCCGGGGC
TACGTGCACCGTTGCGAGAGAGGTGCTGGATGTCTTCTCGGGGCTGCTGC
TCATGGCCAACCGGATTTCGCAGGCCAACCGGCGAGTAGAAGGCGTTGTC
CGATACCGTTTTCCTTGTCCCTTGTTAGTCGTTCATAGTCGGTAGCCCGG
GCTAGTCGGGCACCTCTTCTAGGGACCATTAAAGTGGTAACCACGTATAT
ATCTTGGCGTTCCTGGAGAGCAACGGTTGTTGTAGATATTGGGGGTGCGC
TGCATCGCTCAAATGGCGCCCCGCTCGTGATGAAGAGCAGCAAGGCACAA
GAAGGCTGTATATCGTGCCCAGGCGCAAAATATCGACAAATGAGCGTTGG
CGTCGTGCTGGTATGTCGGTCGTTGAAGCTGACACGAGCATTGCTTTCGT
TCCAACAAACACTTGCCCCACAGCTGCGATGTCCTTCAGTCCGCACGCTG
TGGCCGACAACCGCTTTGGCACAGTAGGTCAACGCCCGCCCTTTGTCCCC
TGTTCCTTTCACACTACGCTATTTCGTTTGGACACCCATTCAGATGCGTA
ACGCTTGCTCAGAGTCTTTTGTCCTCCATCAAGGGCCTGGGCACAGCCGC
AACGAACGATCCTCGAGCTGCGGAGAGGGACTCGCAAGTCCTCACGCGCA
GGAGCGAGGTCAGTGGAGATGGTCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9760:1620..2647+

>mRNA_S-dermatodea_contig9760.17745.1 ID=mRNA_S-dermatodea_contig9760.17745.1|Name=mRNA_S-dermatodea_contig9760.17745.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at S-dermatodea_contig9760:1620..2647+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGTGCTCGCAGGGCGAAGAGCTTGTGCTCGCAGGGCGAAGAGATACTC
GGCTACGTCAACCCGTGGCTAGCCTTGGTAGGCCCCGGGGCTACGTGCAC
CGTTGCGAGAGAGGTGCTGGATGTCTTCTCGGGGCTGCTGCTCATGGCCA
ACCGGATTTCGCAGGCCAACCGATACTCGGCTACGTCAACCCGTGGCTAG
CCTTGGTAGGCCCCGGGGCTACGTGCACCGTTGCGAGAGAGGTGCTGGAT
GTCTTCTCGGGGCTGCTGCTCATGGCCAACCGGATTTCGCAGGCCAACCG
ATGCGTAACGCTTGCTCAGAGTCTTTTGTCCTCCATCAAGGGCCTGGGCA
CAGCCGCAACGAACGATCCTCGAGCTGCGGAGAGGGACTCGCAAGTCCTC
ACGCGCAGGAGCGAGGTCAGTGGAGATGGTCGTGAATGCGTAACGCTTGC
TCAGAGTCTTTTGTCCTCCATCAAGGGCCTGGGCACAGCCGCAACGAACG
ATCCTCGAGCTGCGGAGAGGGACTCGCAAGTCCTCACGCGCAGGAGCGAG
GTCAGTGGAGATGGTCGTGA
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