mRNA_S-dermatodea_contig976.17743.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig976.17743.1
Unique NamemRNA_S-dermatodea_contig976.17743.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig976.17743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig976contigS-dermatodea_contig976:19642..21946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size359
Cds size216
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig976.17743.1prot_S-dermatodea_contig976.17743.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig976 19642..21221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925429.2688694-CDS-S-dermatodea_contig976:19641..198411622925429.2688694-CDS-S-dermatodea_contig976:19641..19841Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig976 19642..19841 +
1694079927.563876-CDS-S-dermatodea_contig976:19641..198411694079927.563876-CDS-S-dermatodea_contig976:19641..19841Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig976 19642..19841 +
1622925429.2857978-CDS-S-dermatodea_contig976:21205..212211622925429.2857978-CDS-S-dermatodea_contig976:21205..21221Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig976 21206..21221 +
1694079927.5751638-CDS-S-dermatodea_contig976:21205..212211694079927.5751638-CDS-S-dermatodea_contig976:21205..21221Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig976 21206..21221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925429.302966-UTR-S-dermatodea_contig976:21221..213311622925429.302966-UTR-S-dermatodea_contig976:21221..21331Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig976 21222..21331 +
1694079927.5854635-UTR-S-dermatodea_contig976:21221..213311694079927.5854635-UTR-S-dermatodea_contig976:21221..21331Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig976 21222..21331 +
1622925429.3172312-UTR-S-dermatodea_contig976:21913..219461622925429.3172312-UTR-S-dermatodea_contig976:21913..21946Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig976 21914..21946 +
1694079927.5971732-UTR-S-dermatodea_contig976:21913..219461694079927.5971732-UTR-S-dermatodea_contig976:21913..21946Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig976 21914..21946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig976.17743.1

>prot_S-dermatodea_contig976.17743.1 ID=prot_S-dermatodea_contig976.17743.1|Name=mRNA_S-dermatodea_contig976.17743.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
HTATAQKFGKFCATSIHVCLLLQIPVTTATALQQSLPRPSSTREVGFRAR
GLQQDLAPSGSSVEQKRRADT*
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mRNA from alignment at S-dermatodea_contig976:19642..21946+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig976.17743.1 ID=mRNA_S-dermatodea_contig976.17743.1|Name=mRNA_S-dermatodea_contig976.17743.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2305bp|location=Sequence derived from alignment at S-dermatodea_contig976:19642..21946+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACACGGCCACAGCGCAAAAGTTCGGCAAGTTCTGTGCGACCTCTATCCA
CGTTTGCTTGCTGCTGCAAATACCGGTAACCACAGCCACAGCTCTTCAGC
AGTCGCTACCAAGGCCTTCTTCCACGCGTGAGGTGGGATTTCGCGCGCGT
GGTCTACAGCAGGACCTGGCTCCGTCAGGTTCAAGCGTCGAACAAAAACG
GTGAGGGCACTGATGACAGTCCCGCCCGGGGCTGGGCTGGACAGCACCAC
GGCATGCCCTGCTCTAGGGGTGGGGCTTATGGTTGCATCGCAGGAGGCTG
TGGAGTCCGCAAAATAATCGTGCGGGCAGATATTTAATTGAACCATGTTC
CTCGCCTCTTAGGGGGAAAGCAGATGCGTCGGGTTGCGGTTCTATTGCGT
CCCCAAGTCGATTTATTTCCAACCATAACTGGATCCAGCACGAATCCCCG
TCATCCACAGGGTCAGTGGTTTGTATTTTGTATTTTTCGAACCGCATTGA
ATGTCCGCCCGCTTGGTCAGCGCGAAAGACGTGGGGAGTAGGTTTCGCGA
GACAGACGCGGTCCTGTTGAAAAACAGCACCGAGCTCGCGTACCAGGCTT
CAAGTTGCGCGATAACCGCAGGATGGGAATAGCGCTCGAGTTCGCCCAAA
TCGAACTTGATGTGTGTTGCACACAGCCGGTATACGCGTGGTCTTCTATT
GTAGAGCTCGCTCCAAAAGGAAGAAATATTATACCTGGTACTGTACAGGT
AAGGACGCTGGCGTGCGTGTATGTTATGCATGTATGCATAAATGTACAGA
GTATTCATACATACATTACCTGAGCAATCCTTTTCCTTTGGTTATAGTCC
GACCTGTATTATCGACGCACTTCCTATGCCGTGGTGCGGAACACCCCAGA
GAGCGCCGCGTGGCAGAGTCGCAGCCCCACATACAGCTTCAAGTCATCAC
GCACCGGTGGGCCGTATGGTACATACACGCCTTGGAGGTTCAGCGCGGAA
ATTGACGCGTGGCGATCCGCCGTGCGGGATGATTGACCGGGGTTGCATCT
TCTCAGGCAGCCCGAATCCGTCTTCGGATACCTGTACCGAGAATTTAAAA
ATACGGGCAAGGTTAGGAAATTTCCGGGAAACCTGTTTGACGCTCGCTTA
CACGTTGCGGTTTAGGAGGTGTCCAGCAACATCAAATTGTTAATGTTATC
TTGCATCACGTGTTTCGGGGCCCGCTGGCTCCTTGCACCACTCCCGGCGG
GTACCGTTGCAGCGTACCATCAACATTGCCCTAATGTGTTATCATGGCGG
GCGCTGTGCTCTGTCTCGAGACACTCCAGCGTGCGGTATGCGCTTGTGGA
ATCCTGAGCTCCTTGCGAAAAGTCTTGCCAGCTTCAATCGGTTGGTTTCG
GGTGAGCGCCTCGCAGCCATATGGGCGGCCTGGGCTCGTCAAATATTTTC
TCGGAAATTGTGAGCACCGAGGCGGTGTGCACCGGTTCGGTAAAGGTCGT
GTACCGTATGTTGAATCCTCGCCACACTTGAAGCGCGCGACCATGATGGT
GCCAATGCAAACAGGCGCGCGGATACTTGATGGGCGGAGTCGACCCCCAG
GCCGGATGGGATGGCGATCAAGAGCAGGAGGAGGAGGTGGTGGTGGTGGG
GTACGCCTTCATGGCCAAGAAAATGGACGCCATGGCGAAGGTGAACGTCT
GGAAAGGTTGTTCGTCGCGGGGGTTGCCGCAAGGGTTATGTTCAAGTTCG
ACTGTGTAGTGAGTACTGAGACGACACTCTGACGAGAGCGCATGGGCACG
ATGCACAGGAGACACGAGAATGCTTTCGAAAGTATTTTGGCGAGAGCTCG
TGGGGCATTTCAGAGCACGTCGATTGAGTCGGCGGGTGATTGTGTAGTTA
CAGCAGTGCGCAACGTGGTTTGTATGCAGAGAAATCGACAATGTGATCAC
AGGCTCGGTTTAGGGTTCTGGGTTGCAGGGCAGTCAGGGAGCGTGTAAAG
GTGGATCACGTTTGCGTTTGCAGGTCGCCTTTCCAACCGCTCTTCGCTAG
GCACCCAAATGCGTTATGCGAGTTCCAGAGCAAAGAAGGCCGCTTTTGGA
ATTTGTGTTGCCTGACAACTCGACGAACAACCCTCAGCCAGTGGGGACTG
CGATGTCATGAACGCGTTCAGTATACAATTGCACGTGGTTCCTCTAGCGG
AGCTGGCTCACTCCTCCTGCATGCCTCGTTTTCCCAAAACCACACGCTGA
TCCCTTTATGTTTGTAATTCAGGTGATGGTAGAAGGCCCTGGTGAAGGAG
TGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig976:19642..21946+

>mRNA_S-dermatodea_contig976.17743.1 ID=mRNA_S-dermatodea_contig976.17743.1|Name=mRNA_S-dermatodea_contig976.17743.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig976:19642..21946+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACACGGCCACAGCGCAAAAGTTCGGCAAGTTCTGTGCGACCTCTATCCA
CGTTTGCTTGCTGCTGCAAATACCGGTAACCACAGCCACAGCTCTTCAGC
AGTCGCTACCAAGGCCTTCTTCCACGCGTGAGGTGGGATTTCGCGCGCGT
GGTCTACAGCAGGACCTGGCTCCGTCAGGTTCAAGCGTCGAACAAAAACG
CACACGGCCACAGCGCAAAAGTTCGGCAAGTTCTGTGCGACCTCTATCCA
CGTTTGCTTGCTGCTGCAAATACCGGTAACCACAGCCACAGCTCTTCAGC
AGTCGCTACCAAGGCCTTCTTCCACGCGTGAGGTGGGATTTCGCGCGCGT
GGTCTACAGCAGGACCTGGCTCCGTCAGGTTCAAGCGTCGAACAAAAACG
GCGCGCGGATACTTGAGCGCGCGGATACTTGA
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