mRNA_S-dermatodea_contig97571.17739.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A8F0F7K4_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7K4_9PHAE) HSP 1 Score: 204 bits (518), Expect = 5.300e-65 Identity = 99/121 (81.82%), Postives = 110/121 (90.91%), Query Frame = 1
Query: 1 MISKSTALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
M KS LIKRDI+IGSRR SNYFWT ILF+GGLAFL+TG+SSY+ +N LPF+NS +L FLPQGLVM FYGVVALSLSIYIGLTIFWDIGSGYNEFDKQ+EL+RIVR+GFPGKNRQILLVY
Sbjct: 1 MSIKSNELIKRDIVIGSRRISNYFWTVILFIGGLAFLITGISSYFQRNFLPFINSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQTELVRIVRKGFPGKNRQILLVY 121
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A6G6D7G8_ECTSI (Photosystem I assembly protein Ycf4 n=32 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7G8_ECTSI) HSP 1 Score: 195 bits (496), Expect = 1.070e-61 Identity = 95/117 (81.20%), Postives = 106/117 (90.60%), Query Frame = 1
Query: 13 STALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
S L+KRDI++GSRRFSN+FWT ILF GGL FLLTG+SSY+ KNLL F+NS +L FLPQGLVM FYGVV +SLSIYIGLTIFWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY
Sbjct: 2 SNNLLKRDIVVGSRRFSNFFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVGISLSIYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVY 118
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A6B7IL95_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IL95_9PHAE) HSP 1 Score: 194 bits (493), Expect = 1.810e-59 Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1
Query: 13 STALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
S L+KRDI++GSRRFSN+FWT +LF GGL FLL G+SSY+ KNL+ F+NS++L FLPQGLVM FYGVVA+SLS+YIGLTIFWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY
Sbjct: 2 SDNLLKRDIVVGSRRFSNFFWTFVLFFGGLGFLLAGISSYFQKNLIFFINSMELAFLPQGLVMTFYGVVAISLSLYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVY 118
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A2I4Q2G9_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G9_9PHAE) HSP 1 Score: 189 bits (480), Expect = 3.410e-59 Identity = 90/116 (77.59%), Postives = 104/116 (89.66%), Query Frame = 1
Query: 16 TALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
T +IKRDIIIGSRRFSN FW ILFLGG+ FLLTG+S+YY KN LPFVN+ DL FLPQGL+M FYG++ LSLS++I LTIFWD+GSGYNEF+KQ+ELIRIVRRGFPGKNR+ILLVY
Sbjct: 8 THIIKRDIIIGSRRFSNLFWAIILFLGGVGFLLTGISTYYQKNFLPFVNTADLSFLPQGLIMTFYGIIGLSLSLFISLTIFWDVGSGYNEFNKQTELIRIVRRGFPGKNRKILLVY 123
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A8F0F7W7_AKKLU (Photosystem I assembly protein Ycf4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F7W7_AKKLU) HSP 1 Score: 189 bits (479), Expect = 4.690e-59 Identity = 91/113 (80.53%), Postives = 101/113 (89.38%), Query Frame = 1
Query: 25 IKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
IKRD+++GSRRFSNYFW +LF GG FLLTG+SSY+ KNLL F+NS +L FLPQGLVM FYGVVA+SLSIYI LTIFWDIGSGYNEFDK+ ELIRIVRRGFPGKNRQILLVY
Sbjct: 10 IKRDVVVGSRRFSNYFWALVLFFGGAGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVAISLSIYIALTIFWDIGSGYNEFDKRDELIRIVRRGFPGKNRQILLVY 122
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A1L2F1V9_9PHAE (Photosystem I assembly protein Ycf4 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1V9_9PHAE) HSP 1 Score: 188 bits (478), Expect = 6.650e-59 Identity = 87/115 (75.65%), Postives = 104/115 (90.43%), Query Frame = 1
Query: 19 ALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
+L+KRDI++GSRRFSNYFWT ILFLGGL FL+ G+SSY+ KNLL F+NS L FLPQG++M FYGV+A+ LS YIGLTIFWD+GSGYNEFDK++EL+RIVRRGFPGKNR+ILLVY
Sbjct: 8 SLLKRDIVVGSRRFSNYFWTIILFLGGLGFLIAGISSYFQKNLLGFINSEQLSFLPQGVIMTFYGVIAIGLSFYIGLTIFWDVGSGYNEFDKENELVRIVRRGFPGKNRKILLVY 122
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A344PFE2_9PHAE (Photosystem I assembly protein Ycf4 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFE2_9PHAE) HSP 1 Score: 187 bits (474), Expect = 2.380e-58 Identity = 90/117 (76.92%), Postives = 102/117 (87.18%), Query Frame = 1
Query: 13 STALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
S L+KRDI++GSRRFSN+FW ILF GGL F LTG+ SY+ KN L F+NS DL FLPQGL+M FYGVVA+SLSIYI LT+FWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY
Sbjct: 2 SDNLLKRDIVVGSRRFSNFFWAFILFFGGLGFFLTGVLSYFKKNFLFFINSNDLAFLPQGLIMTFYGVVAISLSIYISLTVFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVY 118
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A8E6D5U2_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5U2_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.130e-57 Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = 1
Query: 22 LIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
L+KRDIIIGSRRFSNYFW IL LGGL FLL G+SSY+ KN LPF NSI+L F+PQGLVM FYGVVA+SLSIYI LTI WD+G GYNEFDK ELIRIVRRGFPGKNRQILLVY
Sbjct: 10 LLKRDIIIGSRRFSNYFWAFILLLGGLGFLLAGVSSYFKKNFLPFGNSIELNFVPQGLVMTFYGVVAISLSIYIALTILWDVGGGYNEFDKDKELIRIVRRGFPGKNRQILLVY 123
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: Q2PQH1_FUCVE (Photosystem I assembly protein Ycf4 n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH1_FUCVE) HSP 1 Score: 179 bits (454), Expect = 2.960e-55 Identity = 84/114 (73.68%), Postives = 101/114 (88.60%), Query Frame = 1
Query: 22 LIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
L+KRDIIIGSRRFSNYFWT ILF GGL FL+ G+SSY N+L F++S +L FLPQGL+M FYGV+A+SLS+YI LTIFWD+GSGYNEFDK+++L+RIVR GFPGKNR+ILLVY
Sbjct: 9 LLKRDIIIGSRRFSNYFWTIILFFGGLGFLIAGISSYLQNNILFFIDSKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNRKILLVY 122
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: B7T212_VAULI (Photosystem I assembly protein Ycf4 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T212_VAULI) HSP 1 Score: 167 bits (424), Expect = 1.040e-50 Identity = 83/121 (68.60%), Postives = 97/121 (80.17%), Query Frame = 1
Query: 1 MISKSTALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
M K LI+RDII+GSRRFSNYFW IL +GGL FLL G SSY NLL F N +L+F+PQG+VM FYGVVA+SLS YI LTI WD+G+GYNEF+K EL+RI+R+GFPGKNRQILLVY
Sbjct: 1 MNHKIKNLIRRDIILGSRRFSNYFWALILAIGGLGFLLAGFSSYSKINLLYFANPTELIFIPQGIVMTFYGVVAISLSFYITLTIIWDVGAGYNEFNKVDELVRIMRKGFPGKNRQILLVY 121 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig97571.17739.1 >prot_S-dermatodea_contig97571.17739.1 ID=prot_S-dermatodea_contig97571.17739.1|Name=mRNA_S-dermatodea_contig97571.17739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp MISKSTALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLback to top mRNA from alignment at S-dermatodea_contig97571:148..510+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig97571.17739.1 ID=mRNA_S-dermatodea_contig97571.17739.1|Name=mRNA_S-dermatodea_contig97571.17739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at S-dermatodea_contig97571:148..510+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig97571:148..510+ >mRNA_S-dermatodea_contig97571.17739.1 ID=mRNA_S-dermatodea_contig97571.17739.1|Name=mRNA_S-dermatodea_contig97571.17739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig97571:148..510+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |