mRNA_S-dermatodea_contig97571.17739.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97571.17739.1
Unique NamemRNA_S-dermatodea_contig97571.17739.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A8F0F7K4_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7K4_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 5.300e-65
Identity = 99/121 (81.82%), Postives = 110/121 (90.91%), Query Frame = 1
Query:    1 MISKSTALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            M  KS  LIKRDI+IGSRR SNYFWT ILF+GGLAFL+TG+SSY+ +N LPF+NS +L FLPQGLVM FYGVVALSLSIYIGLTIFWDIGSGYNEFDKQ+EL+RIVR+GFPGKNRQILLVY
Sbjct:    1 MSIKSNELIKRDIVIGSRRISNYFWTVILFIGGLAFLITGISSYFQRNFLPFINSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQTELVRIVRKGFPGKNRQILLVY 121          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A6G6D7G8_ECTSI (Photosystem I assembly protein Ycf4 n=32 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7G8_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.070e-61
Identity = 95/117 (81.20%), Postives = 106/117 (90.60%), Query Frame = 1
Query:   13 STALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            S  L+KRDI++GSRRFSN+FWT ILF GGL FLLTG+SSY+ KNLL F+NS +L FLPQGLVM FYGVV +SLSIYIGLTIFWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY
Sbjct:    2 SNNLLKRDIVVGSRRFSNFFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVGISLSIYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVY 118          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A6B7IL95_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IL95_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.810e-59
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1
Query:   13 STALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            S  L+KRDI++GSRRFSN+FWT +LF GGL FLL G+SSY+ KNL+ F+NS++L FLPQGLVM FYGVVA+SLS+YIGLTIFWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY
Sbjct:    2 SDNLLKRDIVVGSRRFSNFFWTFVLFFGGLGFLLAGISSYFQKNLIFFINSMELAFLPQGLVMTFYGVVAISLSLYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVY 118          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A2I4Q2G9_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G9_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.410e-59
Identity = 90/116 (77.59%), Postives = 104/116 (89.66%), Query Frame = 1
Query:   16 TALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            T +IKRDIIIGSRRFSN FW  ILFLGG+ FLLTG+S+YY KN LPFVN+ DL FLPQGL+M FYG++ LSLS++I LTIFWD+GSGYNEF+KQ+ELIRIVRRGFPGKNR+ILLVY
Sbjct:    8 THIIKRDIIIGSRRFSNLFWAIILFLGGVGFLLTGISTYYQKNFLPFVNTADLSFLPQGLIMTFYGIIGLSLSLFISLTIFWDVGSGYNEFNKQTELIRIVRRGFPGKNRKILLVY 123          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A8F0F7W7_AKKLU (Photosystem I assembly protein Ycf4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F7W7_AKKLU)

HSP 1 Score: 189 bits (479), Expect = 4.690e-59
Identity = 91/113 (80.53%), Postives = 101/113 (89.38%), Query Frame = 1
Query:   25 IKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            IKRD+++GSRRFSNYFW  +LF GG  FLLTG+SSY+ KNLL F+NS +L FLPQGLVM FYGVVA+SLSIYI LTIFWDIGSGYNEFDK+ ELIRIVRRGFPGKNRQILLVY
Sbjct:   10 IKRDVVVGSRRFSNYFWALVLFFGGAGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVAISLSIYIALTIFWDIGSGYNEFDKRDELIRIVRRGFPGKNRQILLVY 122          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A1L2F1V9_9PHAE (Photosystem I assembly protein Ycf4 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1V9_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 6.650e-59
Identity = 87/115 (75.65%), Postives = 104/115 (90.43%), Query Frame = 1
Query:   19 ALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            +L+KRDI++GSRRFSNYFWT ILFLGGL FL+ G+SSY+ KNLL F+NS  L FLPQG++M FYGV+A+ LS YIGLTIFWD+GSGYNEFDK++EL+RIVRRGFPGKNR+ILLVY
Sbjct:    8 SLLKRDIVVGSRRFSNYFWTIILFLGGLGFLIAGISSYFQKNLLGFINSEQLSFLPQGVIMTFYGVIAIGLSFYIGLTIFWDVGSGYNEFDKENELVRIVRRGFPGKNRKILLVY 122          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A344PFE2_9PHAE (Photosystem I assembly protein Ycf4 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFE2_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.380e-58
Identity = 90/117 (76.92%), Postives = 102/117 (87.18%), Query Frame = 1
Query:   13 STALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            S  L+KRDI++GSRRFSN+FW  ILF GGL F LTG+ SY+ KN L F+NS DL FLPQGL+M FYGVVA+SLSIYI LT+FWD+GSGYNEFDKQ+ELIRIVRRGFPGKNRQILLVY
Sbjct:    2 SDNLLKRDIVVGSRRFSNFFWAFILFFGGLGFFLTGVLSYFKKNFLFFINSNDLAFLPQGLIMTFYGVVAISLSIYISLTVFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVY 118          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: A0A8E6D5U2_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5U2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.130e-57
Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = 1
Query:   22 LIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            L+KRDIIIGSRRFSNYFW  IL LGGL FLL G+SSY+ KN LPF NSI+L F+PQGLVM FYGVVA+SLSIYI LTI WD+G GYNEFDK  ELIRIVRRGFPGKNRQILLVY
Sbjct:   10 LLKRDIIIGSRRFSNYFWAFILLLGGLGFLLAGVSSYFKKNFLPFGNSIELNFVPQGLVMTFYGVVAISLSIYIALTILWDVGGGYNEFDKDKELIRIVRRGFPGKNRQILLVY 123          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: Q2PQH1_FUCVE (Photosystem I assembly protein Ycf4 n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH1_FUCVE)

HSP 1 Score: 179 bits (454), Expect = 2.960e-55
Identity = 84/114 (73.68%), Postives = 101/114 (88.60%), Query Frame = 1
Query:   22 LIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            L+KRDIIIGSRRFSNYFWT ILF GGL FL+ G+SSY   N+L F++S +L FLPQGL+M FYGV+A+SLS+YI LTIFWD+GSGYNEFDK+++L+RIVR GFPGKNR+ILLVY
Sbjct:    9 LLKRDIIIGSRRFSNYFWTIILFFGGLGFLIAGISSYLQNNILFFIDSKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNRKILLVY 122          
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Match: B7T212_VAULI (Photosystem I assembly protein Ycf4 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T212_VAULI)

HSP 1 Score: 167 bits (424), Expect = 1.040e-50
Identity = 83/121 (68.60%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    1 MISKSTALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLLPFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQSELIRIVRRGFPGKNRQILLVY 363
            M  K   LI+RDII+GSRRFSNYFW  IL +GGL FLL G SSY   NLL F N  +L+F+PQG+VM FYGVVA+SLS YI LTI WD+G+GYNEF+K  EL+RI+R+GFPGKNRQILLVY
Sbjct:    1 MNHKIKNLIRRDIILGSRRFSNYFWALILAIGGLGFLLAGFSSYSKINLLYFANPTELIFIPQGIVMTFYGVVAISLSFYITLTIIWDVGAGYNEFNKVDELVRIMRKGFPGKNRQILLVY 121          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97571.17739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7K4_9PHAE5.300e-6581.82Photosystem I assembly protein Ycf4 n=1 Tax=Protoh... [more]
A0A6G6D7G8_ECTSI1.070e-6181.20Photosystem I assembly protein Ycf4 n=32 Tax=Phaeo... [more]
A0A6B7IL95_9PHAE1.810e-5978.63Photosystem I assembly protein Ycf4 n=1 Tax=Clados... [more]
A0A2I4Q2G9_9PHAE3.410e-5977.59Photosystem I assembly protein Ycf4 n=1 Tax=Dictyo... [more]
A0A8F0F7W7_AKKLU4.690e-5980.53Photosystem I assembly protein Ycf4 n=1 Tax=Akkesi... [more]
A0A1L2F1V9_9PHAE6.650e-5975.65Photosystem I assembly protein Ycf4 n=13 Tax=Sarga... [more]
A0A344PFE2_9PHAE2.380e-5876.92Photosystem I assembly protein Ycf4 n=4 Tax=Scytos... [more]
A0A8E6D5U2_9PHAE1.130e-5780.70Photosystem I assembly protein Ycf4 n=1 Tax=Ishige... [more]
Q2PQH1_FUCVE2.960e-5573.68Photosystem I assembly protein Ycf4 n=3 Tax=Fucace... [more]
B7T212_VAULI1.040e-5068.60Photosystem I assembly protein Ycf4 n=1 Tax=Vauche... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97571contigS-dermatodea_contig97571:148..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue6.3e-47
Seed eggNOG ortholog2880.D1J7C6
Preferred nameycf4
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0019684,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0051082,GO:0055035,GO:0065003,GO:0071840
EggNOG free text desc.photosynthesis
EggNOG OGs2CNI2@1,2QWGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925429.0944781-CDS-S-dermatodea_contig97571:147..5101622925429.0944781-CDS-S-dermatodea_contig97571:147..510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97571 148..510 +
1694079927.4523468-CDS-S-dermatodea_contig97571:147..5101694079927.4523468-CDS-S-dermatodea_contig97571:147..510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97571 148..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97571.17739.1prot_S-dermatodea_contig97571.17739.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97571 148..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97571.17739.1

>prot_S-dermatodea_contig97571.17739.1 ID=prot_S-dermatodea_contig97571.17739.1|Name=mRNA_S-dermatodea_contig97571.17739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MISKSTALIKRDIIIGSRRFSNYFWTAILFLGGLAFLLTGLSSYYHKNLL
PFVNSIDLVFLPQGLVMMFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQS
ELIRIVRRGFPGKNRQILLVY
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mRNA from alignment at S-dermatodea_contig97571:148..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97571.17739.1 ID=mRNA_S-dermatodea_contig97571.17739.1|Name=mRNA_S-dermatodea_contig97571.17739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at S-dermatodea_contig97571:148..510+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTAGTAAAAGTACTGCACTTATAAAGCGTGACATTATTATTGGCTC TAGACGTTTTAGCAATTATTTTTGGACAGCTATTCTATTTTTAGGTGGGT TAGCGTTTTTACTTACTGGTCTTTCAAGTTATTATCATAAAAACCTTTTG CCTTTTGTTAATTCTATAGATTTAGTATTCTTACCTCAAGGACTTGTTAT GATGTTCTATGGAGTAGTTGCTTTAAGTTTAAGTATCTATATTGGGCTTA CTATTTTTTGGGATATAGGAAGTGGTTATAATGAATTTGATAAACAATCT GAATTAATTAGAATAGTAAGACGGGGATTTCCAGGAAAAAATCGACAAAT CTTATTAGTATAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig97571:148..510+

>mRNA_S-dermatodea_contig97571.17739.1 ID=mRNA_S-dermatodea_contig97571.17739.1|Name=mRNA_S-dermatodea_contig97571.17739.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig97571:148..510+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTAGTAAAAGTACTGCACTTATAAAGCGTGACATTATTATTGGCTC
TAGACGTTTTAGCAATTATTTTTGGACAGCTATTCTATTTTTAGGTGGGT
TAGCGTTTTTACTTACTGGTCTTTCAAGTTATTATCATAAAAACCTTTTG
CCTTTTGTTAATTCTATAGATTTAGTATTCTTACCTCAAGGACTTGTTAT
GATGTTCTATGGAGTAGTTGCTTTAAGTTTAAGTATCTATATTGGGCTTA
CTATTTTTTGGGATATAGGAAGTGGTTATAATGAATTTGATAAACAATCT
GAATTAATTAGAATAGTAAGACGGGGATTTCCAGGAAAAAATCGACAAAT
CTTATTAGTATATATGATTAGTAAAAGTACTGCACTTATAAAGCGTGACA
TTATTATTGGCTCTAGACGTTTTAGCAATTATTTTTGGACAGCTATTCTA
TTTTTAGGTGGGTTAGCGTTTTTACTTACTGGTCTTTCAAGTTATTATCA
TAAAAACCTTTTGCCTTTTGTTAATTCTATAGATTTAGTATTCTTACCTC
AAGGACTTGTTATGATGTTCTATGGAGTAGTTGCTTTAAGTTTAAGTATC
TATATTGGGCTTACTATTTTTTGGGATATAGGAAGTGGTTATAATGAATT
TGATAAACAATCTGAATTAATTAGAATAGTAAGACGGGGATTTCCAGGAA
AAAATCGACAAATCTTATTAGTATAT
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