mRNA_S-dermatodea_contig975.17737.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig975.17737.1
Unique NamemRNA_S-dermatodea_contig975.17737.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig975.17737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig975contigS-dermatodea_contig975:22757..23288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size532
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig975.17737.1prot_S-dermatodea_contig975.17737.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig975 22779..23207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.7445853-UTR-S-dermatodea_contig975:22756..227781622925428.7445853-UTR-S-dermatodea_contig975:22756..22778Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig975 22757..22778 +
1694079927.1919153-UTR-S-dermatodea_contig975:22756..227781694079927.1919153-UTR-S-dermatodea_contig975:22756..22778Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig975 22757..22778 +
1622925428.7682939-UTR-S-dermatodea_contig975:23207..232881622925428.7682939-UTR-S-dermatodea_contig975:23207..23288Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig975 23208..23288 +
1694079927.2159111-UTR-S-dermatodea_contig975:23207..232881694079927.2159111-UTR-S-dermatodea_contig975:23207..23288Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig975 23208..23288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.7566643-CDS-S-dermatodea_contig975:22778..232071622925428.7566643-CDS-S-dermatodea_contig975:22778..23207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 22779..23207 +
1694079927.2018895-CDS-S-dermatodea_contig975:22778..232071694079927.2018895-CDS-S-dermatodea_contig975:22778..23207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 22779..23207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig975.17737.1

>prot_S-dermatodea_contig975.17737.1 ID=prot_S-dermatodea_contig975.17737.1|Name=mRNA_S-dermatodea_contig975.17737.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
MRMTLTNRCTVPQATRVTELPRRTDEAYSSSGWFLHHGRVHVGAKFSPCI
TIKARGEKPRSSTYQQKRQTSRSSLGFGNWKLGRYAKGVVSRKHIRVHHP
WSPRSMNTAAARKDSAAICTPTPVITRSSARPHRFGVHHRAR*
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mRNA from alignment at S-dermatodea_contig975:22757..23288+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig975.17737.1 ID=mRNA_S-dermatodea_contig975.17737.1|Name=mRNA_S-dermatodea_contig975.17737.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at S-dermatodea_contig975:22757..23288+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCACACACCCCCACACCCGAATGCGCATGACGCTCACTAACCGTTGCA
CAGTGCCGCAGGCCACTCGGGTGACGGAGCTTCCGCGACGAACCGATGAG
GCGTATTCTAGCTCTGGGTGGTTTCTACACCATGGAAGGGTACACGTCGG
CGCAAAATTTTCCCCATGCATTACCATCAAAGCGCGAGGGGAGAAGCCTC
GATCTTCCACATACCAGCAGAAACGCCAAACCTCCCGATCATCTCTGGGT
TTTGGGAATTGGAAGCTCGGGCGTTACGCCAAGGGTGTCGTCTCAAGAAA
GCACATCCGTGTGCATCATCCATGGTCGCCGAGGTCGATGAACACGGCAG
CGGCGCGCAAAGACAGCGCTGCCATTTGTACCCCCACGCCCGTTATCACG
CGCTCCTCGGCCAGGCCCCACCGCTTCGGAGTGCACCATCGTGCCCGCTG
AGGCGCAGAATCTGCCGTACACGGAAAGCTGTACGACTCTTCCGACAAGC
CCCAAGGTTTACAGGCGCGAGTGAAGCTGTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig975:22757..23288+

>mRNA_S-dermatodea_contig975.17737.1 ID=mRNA_S-dermatodea_contig975.17737.1|Name=mRNA_S-dermatodea_contig975.17737.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig975:22757..23288+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCATGACGCTCACTAACCGTTGCACAGTGCCGCAGGCCACTCGGGT
GACGGAGCTTCCGCGACGAACCGATGAGGCGTATTCTAGCTCTGGGTGGT
TTCTACACCATGGAAGGGTACACGTCGGCGCAAAATTTTCCCCATGCATT
ACCATCAAAGCGCGAGGGGAGAAGCCTCGATCTTCCACATACCAGCAGAA
ACGCCAAACCTCCCGATCATCTCTGGGTTTTGGGAATTGGAAGCTCGGGC
GTTACGCCAAGGGTGTCGTCTCAAGAAAGCACATCCGTGTGCATCATCCA
TGGTCGCCGAGGTCGATGAACACGGCAGCGGCGCGCAAAGACAGCGCTGC
CATTTGTACCCCCACGCCCGTTATCACGCGCTCCTCGGCCAGGCCCCACC
GCTTCGGAGTGCACCATCGTGCCCGCTGAATGCGCATGACGCTCACTAAC
CGTTGCACAGTGCCGCAGGCCACTCGGGTGACGGAGCTTCCGCGACGAAC
CGATGAGGCGTATTCTAGCTCTGGGTGGTTTCTACACCATGGAAGGGTAC
ACGTCGGCGCAAAATTTTCCCCATGCATTACCATCAAAGCGCGAGGGGAG
AAGCCTCGATCTTCCACATACCAGCAGAAACGCCAAACCTCCCGATCATC
TCTGGGTTTTGGGAATTGGAAGCTCGGGCGTTACGCCAAGGGTGTCGTCT
CAAGAAAGCACATCCGTGTGCATCATCCATGGTCGCCGAGGTCGATGAAC
ACGGCAGCGGCGCGCAAAGACAGCGCTGCCATTTGTACCCCCACGCCCGT
TATCACGCGCTCCTCGGCCAGGCCCCACCGCTTCGGAGTGCACCATCGTG
CCCGCTGA
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