mRNA_S-dermatodea_contig9745.17733.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9745.17733.1
Unique NamemRNA_S-dermatodea_contig9745.17733.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9745.17733.1 vs. uniprot
Match: A0A6H5KQA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.100e-8
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    1 ASPVAVAGLPEDSRVAPETPPTRRPEVPPSTGEGTGPNPS---------PTQTSPLVVHLGTVRAGTTARRRFNVSNLNPVEVSISGSSG 243
            ASP  +AGLP DSR A   PP R       + E T  +PS         P +  PLVV LG +RAG T R+RFNV+NLNPVEV+++ + G
Sbjct: 1021 ASPTVLAGLPPDSRSAFVRPP-REASRNAGSKEATVADPSSSSPPTASAPPEPRPLVVDLGILRAGATGRQRFNVTNLNPVEVNVTNTGG 1109
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BLAST of mRNA_S-dermatodea_contig9745.17733.1 vs. uniprot
Match: D8LB05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 4.770e-7
Identity = 41/97 (42.27%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:    1 ASPVAVAGLPEDSRVAPETPPTRRPEVPPSTGEGTGPNP----------------SPTQTSPLVVHLGTVRAGTTARRRFNVSNLNPVEVSISGSSG 243
            ASP  VAGLP DSR A   PP    E   + G                       +P +  PLVV LG +RAG T RRRFNV+NLNPVEV+++ + G
Sbjct:  841 ASPTVVAGLPPDSRSAFVRPPR---EASRNAGSKEAXXXXXXXXXXXXXXXXXXXAPPEPRPLVVDLGIIRAGATGRRRFNVTNLNPVEVNVTNTGG 934
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9745.17733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQA3_9PHAE2.100e-846.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB05_ECTSI4.770e-742.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9745contigS-dermatodea_contig9745:4418..5445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.6251686-CDS-S-dermatodea_contig9745:4417..44581622925428.6251686-CDS-S-dermatodea_contig9745:4417..4458Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9745 4418..4458 +
1694079927.1116068-CDS-S-dermatodea_contig9745:4417..44581694079927.1116068-CDS-S-dermatodea_contig9745:4417..4458Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9745 4418..4458 +
1622925428.6380115-CDS-S-dermatodea_contig9745:5243..54451622925428.6380115-CDS-S-dermatodea_contig9745:5243..5445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9745 5244..5445 +
1694079927.1265604-CDS-S-dermatodea_contig9745:5243..54451694079927.1265604-CDS-S-dermatodea_contig9745:5243..5445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9745 5244..5445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9745.17733.1prot_S-dermatodea_contig9745.17733.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9745 4418..5445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9745.17733.1

>prot_S-dermatodea_contig9745.17733.1 ID=prot_S-dermatodea_contig9745.17733.1|Name=mRNA_S-dermatodea_contig9745.17733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=81bp
ASPVAVAGLPEDSRVAPETPPTRRPEVPPSTGEGTGPNPSPTQTSPLVVH
LGTVRAGTTARRRFNVSNLNPVEVSISGSSG
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mRNA from alignment at S-dermatodea_contig9745:4418..5445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9745.17733.1 ID=mRNA_S-dermatodea_contig9745.17733.1|Name=mRNA_S-dermatodea_contig9745.17733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1028bp|location=Sequence derived from alignment at S-dermatodea_contig9745:4418..5445+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCGCCAGTTGCGGTAGCGGGGCTGCCCGAAGATTCGAGGTAAGCGAG
CAGAGAGATGCGGGTGGTAATTGTTTGTGTGAGTGTGTGTGTGTGTGTTT
TTTTTTTTTTTTTGCAGTGGACTCTTTGCGTGTCTGACCACAAGTCGGGT
CGGATTATGCCGATCGGCTATACGTGTGCAAATCAAATCAAATCAATCAA
TCAAATCAAGTGGTTGTGTCTTGGATATTGAAGGCTTAACGGTGAACGAA
TGAAGTATCGATTGATCAGCGCCGCCGTCAATTCAGATATTCATAGTTGT
ACGACGCGGAGCGGTGCAATCTCTTCGGCTCCCGCGGCACCCGCTGTGAT
GCCCGACGACGTGTGATGTTTCCCAACTCTCAGAACGCTGCCGCGCGCGG
CTTGTGGCCGGCCGCCCCAGCGTTGATCGGTGATGGTGGCGTCTTCGGGG
AATCACTTCCCACCACGTTTTGAAACGGCCGAAAAATGGATTGAATATCG
GTGCCACTTGATTTTGATTCGGCACGCAAAAAGGACCCCTTGATTCGGCG
ACGCCGACCGATCAACACTGGGGAGCGGCCACAAGCCACGCGATGGTCTG
AGCGTTGGGAACGCCACGTCTCCCGCAGCTGCTGGTGCCACGGGGACCGA
AGTGTATGCTATAGTGTGTTTTGCTTCATGTGGAATTGTCCGCTGCCTGG
GCCACGTCGTTGTTTGATATAGTTTTTTACGCCAAGAAATGTTGTCGGGA
CCGCAACGCACCCCCACGCTGTTTTTCACCGGAAGGAACCCTTCTCGCTC
CCCGTCCCCACTTCGGACGCACACAGAGTTGCGCCAGAGACACCCCCCAC
GAGACGGCCCGAGGTACCGCCATCCACGGGGGAGGGGACGGGACCAAACC
CATCCCCTACCCAAACAAGCCCCTTGGTGGTGCACTTGGGAACCGTGCGT
GCTGGGACCACCGCTCGGAGGCGATTCAACGTCAGCAATCTGAACCCTGT
GGAGGTTAGCATCAGTGGTAGCAGTGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9745:4418..5445+

>mRNA_S-dermatodea_contig9745.17733.1 ID=mRNA_S-dermatodea_contig9745.17733.1|Name=mRNA_S-dermatodea_contig9745.17733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig9745:4418..5445+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCGCCAGTTGCGGTAGCGGGGCTGCCCGAAGATTCGAGGCGTCGCCA
GTTGCGGTAGCGGGGCTGCCCGAAGATTCGAGAGTTGCGCCAGAGACACC
CCCCACGAGACGGCCCGAGGTACCGCCATCCACGGGGGAGGGGACGGGAC
CAAACCCATCCCCTACCCAAACAAGCCCCTTGGTGGTGCACTTGGGAACC
GTGCGTGCTGGGACCACCGCTCGGAGGCGATTCAACGTCAGCAATCTGAA
CCCTGTGGAGGTTAGCATCAGTGGTAGCAGTGGCAGTTGCGCCAGAGACA
CCCCCCACGAGACGGCCCGAGGTACCGCCATCCACGGGGGAGGGGACGGG
ACCAAACCCATCCCCTACCCAAACAAGCCCCTTGGTGGTGCACTTGGGAA
CCGTGCGTGCTGGGACCACCGCTCGGAGGCGATTCAACGTCAGCAATCTG
AACCCTGTGGAGGTTAGCATCAGTGGTAGCAGTGGC
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