mRNA_S-dermatodea_contig9736.17727.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9736.17727.1
Unique NamemRNA_S-dermatodea_contig9736.17727.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: D8LMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH3_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.730e-70
Identity = 100/112 (89.29%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 AAAAERALADVKPQELLCGKCSAGSGGADCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGICRPKPEE 336
            A AAERALAD+KP ELLCGKCSAGSGGA CSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCD CHLHGFAAKPKPCLGGA CLFGG HP KA+NG  E+VLGCGICRPKPEE
Sbjct:  463 AQAAERALADIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICRPKPEE 574          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: A0A6H5JCA5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA5_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 2.750e-68
Identity = 104/120 (86.67%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 AAAAERALADVKPQELLCGKCSAGSGGADCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGICRPKPEEAEAAAVEQ 360
            A AAERALAD+KP ELLCGKCSAGSGGA CSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGA CLFGG HP KA+NG  E+VLGCGICRPKPEE E   V+Q
Sbjct: 1435 AQAAERALADIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICRPKPEE-EMGGVDQ 1553          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: A0A3P3Y9U2_PLABS (RING-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y9U2_PLABS)

HSP 1 Score: 116 bits (290), Expect = 7.240e-30
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   19 ALADVKPQELLCGKCSAGSGGADCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGIC 318
            A   V   +++C  C AGSG   C +HG E++E+KC +CC  +A++FCGG  HFC  CH  GF A+ +PC   + C+F G HP +ARNG DE++LGC  C
Sbjct:  124 AQVQVNAADVVCSSC-AGSGRVKCKQHGLEYLEYKCRYCCTGIAAFFCGGTTHFCTRCHTFGFNARAQPCPEDSTCVFYGKHPSRARNGKDEYLLGCAAC 222          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: J9I598_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I598_9SPIT)

HSP 1 Score: 96.7 bits (239), Expect = 6.950e-21
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   31 VKPQELLCGKCSA---GSGGADCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGICRPKPEEAEAAAVEQ 360
            VKP++L+CG CSA   G+G  DC +HG++F+E KC +CC  VA +FC G  HFC+ CH     ++ K C G  +C     HPP       E+ LGCG+CR   E       +Q
Sbjct:  512 VKPEDLICGSCSALKLGAGVTDCKKHGKDFIEFKCRYCC-TVALWFCFGTTHFCEPCHQVANDSRKKECPGIEQCPLKIDHPPTGA----EYALGCGLCRNNAEHEPLGLPQQ 619          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: A0A7S3MHU1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MHU1_9SPIT)

HSP 1 Score: 76.3 bits (186), Expect = 6.890e-15
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 1
Query:   28 DVKPQELLCGKC----SAGSGGADCSEHGQEFMEHKCYWCCRKVASYFC-GGVMHFCDVCHLHGFAAKPKP---CLGGARCLFGGAHPPKARNGHDE--FVLGCGICR 321
            ++K ++LLC KC    S   G  DC EHG EF++ KC +CC  VA +FC GG   FC  CH +  A+  +    C GG  C  G    PKA     E  F LGC +CR
Sbjct:   23 ELKREDLLCKKCQSKRSLDWGVTDCEEHGNEFIDWKCMFCC-SVALFFCAGGQYTFCTPCHNNAMASDLETKTECEGGLDCPLGLKSHPKASKSAAESKFALGCSLCR 129          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: A0A388LR61_CHABU (RING-type domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388LR61_CHABU)

HSP 1 Score: 78.6 bits (192), Expect = 1.510e-14
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   10 AERALA-DVKPQELLCGKC-SAGSGGADCSE-HGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCH-----LHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGICR 321
            AE A A D    EL+CG C S  SG  +C   HG+E+++ KC +CC  +A+++C G  HFCDVCH     +H     P PC G + C  G  H P+      E  LGC +CR
Sbjct:  470 AENAAAGDYNLAELICGGCASMASGAEECKRGHGKEYIQFKCRYCC-SIATFYCMGTTHFCDVCHSRRPDIHKGRIAP-PCPGPSTCPLGIPHHPQGV----ECYLGCALCR 575          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: J9IHP5_9SPIT (RING-type domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IHP5_9SPIT)

HSP 1 Score: 77.4 bits (189), Expect = 3.530e-14
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 1
Query:   31 VKPQELLCGKCSA---GSGGADCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGICRPKPEEAE 342
             K ++LLC  C+A   G+    C+ HG+EF+E+KC +CC  +AS+FC G   FCD CH       PK C   + C F G HPP  +        GC +C+   EE +
Sbjct:  295 TKREDLLCVYCTALKLGNQFQPCNNHGEEFIEYKCQFCC-DIASWFCWGATRFCDPCHNIATFNIPKICNPNS-CKFNGNHPPNGQ----PHSFGCKLCKISEEEKQ 395          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: L1JRQ4_GUITC (RING-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRQ4_GUITC)

HSP 1 Score: 76.6 bits (187), Expect = 5.260e-14
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 1
Query:   34 KPQELLCGKCSA---GSGGADCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCH---LHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGICRPKPEEAE 342
            K ++L+CG CSA   G+G   C +HG +++E+KC +CC  +A++FC G  HFC+ CH     G   +P+  +    C     H         E   GC +CR K  E++
Sbjct:  264 KREDLICGSCSASKLGNGRKTCKQHGDQYVEYKCRFCC-SIATFFCFGSTHFCESCHKGWTEGSNQRPQSLV--KPCTCSEKHAKNCSTAAGEHCFGCSLCRIKSHESK 369          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: J9J756_9SPIT (RING-type domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9J756_9SPIT)

HSP 1 Score: 77.0 bits (188), Expect = 5.280e-14
Identity = 42/112 (37.50%), Postives = 56/112 (50.00%), Query Frame = 1
Query:   34 KPQELLCGKCSAGSGG---ADCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGICRPKPEEAEAAAVEQ 360
            K +++LC  C+A   G   A C  HG+++M HKC +CC + AS+FC G   FCD CH       PK C     C   G HPP        F  GC +C+   EE E   +E+
Sbjct:  461 KKEDILCVYCTAVKSGNKFAPCKTHGEDYMGHKCQFCC-ETASWFCWGATRFCDPCHNVAAQNLPKIC-NPETCQLKGNHPPNGT----PFSFGCKLCKIFQEEEENKILER 566          
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Match: F0ZCM3_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZCM3_DICPU)

HSP 1 Score: 74.7 bits (182), Expect = 3.500e-13
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   28 DVKPQELLCGKCSAGSGGADCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCH--LHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFVLGCGIC 318
            D KP+EL+CG CSA +G   C  HG+EF+E+KC +CC  ++ +FC G  HFC  CH  ++     PK  L   +C     H        +EF  GC +C
Sbjct:  743 DFKPEELICGGCSA-NGNEICKIHGKEFIEYKCKYCC-NISIFFCWGKTHFCADCHKKVNEVTKTPKHLLPQCKCDVEVKHQVG-----EEFCFGCTLC 834          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9736.17727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LMH3_ECTSI2.730e-7089.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCA5_9PHAE2.750e-6886.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A3P3Y9U2_PLABS7.240e-3047.00RING-type domain-containing protein n=1 Tax=Plasmo... [more]
J9I598_9SPIT6.950e-2141.59Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
A0A7S3MHU1_9SPIT6.890e-1541.67Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A388LR61_CHABU1.510e-1441.07RING-type domain-containing protein n=2 Tax=Chara ... [more]
J9IHP5_9SPIT3.530e-1438.32RING-type domain-containing protein n=1 Tax=Oxytri... [more]
L1JRQ4_GUITC5.260e-1433.94RING-type domain-containing protein n=1 Tax=Guilla... [more]
J9J756_9SPIT5.280e-1437.50RING-type domain-containing protein n=1 Tax=Oxytri... [more]
F0ZCM3_DICPU3.500e-1339.39Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9736contigS-dermatodea_contig9736:6857..7733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.9
Seed ortholog evalue1.6e-58
Seed eggNOG ortholog2880.D8LMH3
KEGG koko:K10693
EggNOG free text desc.regulation of axon guidance
EggNOG OGsKOG1428@1,KOG1428@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.3160064-CDS-S-dermatodea_contig9736:6856..71141622925428.3160064-CDS-S-dermatodea_contig9736:6856..7114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9736 6857..7114 -
1694079926.8939612-CDS-S-dermatodea_contig9736:6856..71141694079926.8939612-CDS-S-dermatodea_contig9736:6856..7114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9736 6857..7114 -
1622925428.3276405-CDS-S-dermatodea_contig9736:7628..77331622925428.3276405-CDS-S-dermatodea_contig9736:7628..7733Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9736 7629..7733 -
1694079926.9072363-CDS-S-dermatodea_contig9736:7628..77331694079926.9072363-CDS-S-dermatodea_contig9736:7628..7733Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9736 7629..7733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9736.17727.1prot_S-dermatodea_contig9736.17727.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9736 6857..7733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9736.17727.1

>prot_S-dermatodea_contig9736.17727.1 ID=prot_S-dermatodea_contig9736.17727.1|Name=mRNA_S-dermatodea_contig9736.17727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
AAAAERALADVKPQELLCGKCSAGSGGADCSEHGQEFMEHKCYWCCRKVA
SYFCGGVMHFCDVCHLHGFAAKPKPCLGGARCLFGGAHPPKARNGHDEFV
LGCGICRPKPEEAEAAAVEQ*
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mRNA from alignment at S-dermatodea_contig9736:6857..7733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9736.17727.1 ID=mRNA_S-dermatodea_contig9736.17727.1|Name=mRNA_S-dermatodea_contig9736.17727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=877bp|location=Sequence derived from alignment at S-dermatodea_contig9736:6857..7733- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGGCGGCGGAGCGAGCGCTGGCCGATGTGAAGCCTCAGGAGCTCCT CTGCGGAAAGTGCTCGGCCGGTAGCGGAGGCGCGGACTGTTCCGAACACG GACAGGTGCGTGGGGTTTTGAGCTATTAATAGAGGGGTGTGTGGCGGGGG GGGGGTATGACACCATAGCATCATATATAACGTAAACTTCCACTGAGAGT TAGCTAACTTGGGCCATCTTTTTCCTCTATAGTATCATACCAAAAATATT GGATTATACCCCAATGCTACGTCTGTGTTTTTTTATATTTACTGTTTTCA GGAGGGGGGGGTACTCAGGGTGTACTCAGGGTGTACTCAGGGTGTACTCA TTGATCGTGCATGCCTTACGTTAGTTACGTATGATGCCATGGTTTTTTAT GTCGTGTCTAATGTGTTTAGGGCTATTAATATGTCACAAGTGTCTTTTGT CCTGGGCGGTACCCTGCTATTTATAGTAGTATAATAGCTTTGATGTGCTC TGCGAGCCAATAATATTTGTCTCTACTCTTATAATGATGTTGTTTTGATT GAAGCTCCCGCCTCCCCCCCTGCCCCATCTATTCACGCCACACGAAAACC CCACCATTTGCGCCCTCAGGAGTTCATGGAGCACAAGTGCTACTGGTGCT GCCGCAAGGTAGCCTCGTACTTTTGCGGCGGCGTGATGCACTTCTGCGAC GTTTGCCACCTGCACGGCTTCGCGGCTAAGCCCAAGCCCTGCCTGGGCGG GGCGAGGTGTCTATTCGGCGGCGCCCACCCCCCTAAGGCCCGTAACGGAC ACGACGAATTTGTGCTGGGCTGCGGCATCTGCCGCCCCAAGCCAGAGGAG GCCGAAGCCGCGGCGGTGGAACAGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9736:6857..7733-

>mRNA_S-dermatodea_contig9736.17727.1 ID=mRNA_S-dermatodea_contig9736.17727.1|Name=mRNA_S-dermatodea_contig9736.17727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig9736:6857..7733- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGGCGGCGGAGCGAGCGCTGGCCGATGTGAAGCCTCAGGAGCTCCT
CTGCGGAAAGTGCTCGGCCGGTAGCGGAGGCGCGGACTGTTCCGAACACG
GACAGGCGGCGGCGGCGGAGCGAGCGCTGGCCGATGTGAAGCCTCAGGAG
CTCCTCTGCGGAAAGTGCTCGGCCGGTAGCGGAGGCGCGGACTGTTCCGA
ACACGGACAGGAGTTCATGGAGCACAAGTGCTACTGGTGCTGCCGCAAGG
TAGCCTCGTACTTTTGCGGCGGCGTGATGCACTTCTGCGACGTTTGCCAC
CTGCACGGCTTCGCGGCTAAGCCCAAGCCCTGCCTGGGCGGGGCGAGGTG
TCTATTCGGCGGCGCCCACCCCCCTAAGGCCCGTAACGGACACGACGAAT
TTGTGCTGGGCTGCGGCATCTGCCGCCCCAAGCCAGAGGAGGCCGAAGCC
GCGGCGGTGGAACAGTAGGAGTTCATGGAGCACAAGTGCTACTGGTGCTG
CCGCAAGGTAGCCTCGTACTTTTGCGGCGGCGTGATGCACTTCTGCGACG
TTTGCCACCTGCACGGCTTCGCGGCTAAGCCCAAGCCCTGCCTGGGCGGG
GCGAGGTGTCTATTCGGCGGCGCCCACCCCCCTAAGGCCCGTAACGGACA
CGACGAATTTGTGCTGGGCTGCGGCATCTGCCGCCCCAAGCCAGAGGAGG
CCGAAGCCGCGGCGGTGGAACAGTAG
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