mRNA_S-dermatodea_contig9736.17726.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9736.17726.1
Unique NamemRNA_S-dermatodea_contig9736.17726.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9736.17726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9736contigS-dermatodea_contig9736:5295..5895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size601
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9736.17726.1prot_S-dermatodea_contig9736.17726.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9736 5318..5746 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.2560668-UTR-S-dermatodea_contig9736:5294..53171622925428.2560668-UTR-S-dermatodea_contig9736:5294..5317Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9736 5295..5317 +
1694079926.8610463-UTR-S-dermatodea_contig9736:5294..53171694079926.8610463-UTR-S-dermatodea_contig9736:5294..5317Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9736 5295..5317 +
1622925428.2809486-UTR-S-dermatodea_contig9736:5746..58951622925428.2809486-UTR-S-dermatodea_contig9736:5746..5895Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9736 5747..5895 +
1694079926.8826723-UTR-S-dermatodea_contig9736:5746..58951694079926.8826723-UTR-S-dermatodea_contig9736:5746..5895Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9736 5747..5895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.2676651-CDS-S-dermatodea_contig9736:5317..57461622925428.2676651-CDS-S-dermatodea_contig9736:5317..5746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9736 5318..5746 +
1694079926.87164-CDS-S-dermatodea_contig9736:5317..57461694079926.87164-CDS-S-dermatodea_contig9736:5317..5746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9736 5318..5746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9736.17726.1

>prot_S-dermatodea_contig9736.17726.1 ID=prot_S-dermatodea_contig9736.17726.1|Name=mRNA_S-dermatodea_contig9736.17726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
MIRRRQIFACAHADSPTSTAIGRIAIGYFRKDSSSSSFEDAQACSRALLL
KTCRTTLLHGNVHSMHFNACVLTQVPPSFFKSWRGAIFFLLLQFIDICTI
PSVTPPSINSRLAQVTTHGAPGLIDTLVLRLEFTRRRTGCSY*
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mRNA from alignment at S-dermatodea_contig9736:5295..5895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9736.17726.1 ID=mRNA_S-dermatodea_contig9736.17726.1|Name=mRNA_S-dermatodea_contig9736.17726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=601bp|location=Sequence derived from alignment at S-dermatodea_contig9736:5295..5895+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCTCCTGTTTATTCTTCGTTGTATGATAAGGCGACGCCAAATTTTCGCA
TGCGCGCACGCAGATTCACCTACTTCCACCGCGATAGGCCGCATCGCGAT
CGGATATTTTCGGAAGGATTCAAGTTCTTCAAGCTTCGAAGACGCGCAGG
CCTGCAGCCGAGCGCTGCTCCTTAAAACTTGCCGCACTACACTACTACAT
GGCAATGTACATTCAATGCATTTCAATGCTTGTGTACTCACTCAAGTCCC
TCCTTCCTTTTTCAAATCGTGGAGGGGGGCGATTTTTTTTTTGCTTCTCC
AATTTATCGATATATGTACCATACCAAGTGTCACTCCACCATCTATTAAT
AGCCGGCTGGCTCAAGTCACAACACACGGCGCCCCTGGCTTGATTGACAC
ACTCGTGCTGCGACTTGAATTCACCCGGAGGCGCACAGGCTGCTCCTACT
AATACTGTAGTACTAATATTAATATTAATAGTACGAGTATTAATAGTACT
AATAGTTACTTTATGCTTCCGTGTTTCACGATATACAGTGCTTCTTCAGT
CCCCAGGCACATGCGGCCTGCGCTAAACAGCAAATAATTGTCGAGAGCAT
C
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Coding sequence (CDS) from alignment at S-dermatodea_contig9736:5295..5895+

>mRNA_S-dermatodea_contig9736.17726.1 ID=mRNA_S-dermatodea_contig9736.17726.1|Name=mRNA_S-dermatodea_contig9736.17726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig9736:5295..5895+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATAAGGCGACGCCAAATTTTCGCATGCGCGCACGCAGATTCACCTAC
TTCCACCGCGATAGGCCGCATCGCGATCGGATATTTTCGGAAGGATTCAA
GTTCTTCAAGCTTCGAAGACGCGCAGGCCTGCAGCCGAGCGCTGCTCCTT
AAAACTTGCCGCACTACACTACTACATGGCAATGTACATTCAATGCATTT
CAATGCTTGTGTACTCACTCAAGTCCCTCCTTCCTTTTTCAAATCGTGGA
GGGGGGCGATTTTTTTTTTGCTTCTCCAATTTATCGATATATGTACCATA
CCAAGTGTCACTCCACCATCTATTAATAGCCGGCTGGCTCAAGTCACAAC
ACACGGCGCCCCTGGCTTGATTGACACACTCGTGCTGCGACTTGAATTCA
CCCGGAGGCGCACAGGCTGCTCCTACTAAATGATAAGGCGACGCCAAATT
TTCGCATGCGCGCACGCAGATTCACCTACTTCCACCGCGATAGGCCGCAT
CGCGATCGGATATTTTCGGAAGGATTCAAGTTCTTCAAGCTTCGAAGACG
CGCAGGCCTGCAGCCGAGCGCTGCTCCTTAAAACTTGCCGCACTACACTA
CTACATGGCAATGTACATTCAATGCATTTCAATGCTTGTGTACTCACTCA
AGTCCCTCCTTCCTTTTTCAAATCGTGGAGGGGGGCGATTTTTTTTTTGC
TTCTCCAATTTATCGATATATGTACCATACCAAGTGTCACTCCACCATCT
ATTAATAGCCGGCTGGCTCAAGTCACAACACACGGCGCCCCTGGCTTGAT
TGACACACTCGTGCTGCGACTTGAATTCACCCGGAGGCGCACAGGCTGCT
CCTACTAA
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